NO05G02720, NO05G02720 (gene) Nannochloropsis oceanica

Overview
NameNO05G02720
Unique NameNO05G02720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr5:718112..719659 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:718112..719659 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G02720 vs. NCBI_GenBank
Match: EWM28141.1 (hypothetical protein Naga_100036g44 [Nannochloropsis gaditana])

HSP 1 Score: 156.0 bits (393), Expect = 2.600e-34
Identity = 155/434 (35.71%), Postives = 205/434 (47.24%), Query Frame = 0 
Query:    1 MSDAAARRRAKILAQRGNRMKLVSGLGAAIAQEGKDEETAATTAAAVGPAGRLAADGEGGKATAPEGTCGSETGGVRALNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPHPTVLASMALTASAT----LTTGGNTLRKRYHASR-GDNDDIVEKTTTKNGSTTLRVGPPSP-PSLLKTLTASDAMVRFWLLCLAGVISGIWITVLNATFLADLRMQA--QRQQQHEARAALDEFVAKASPSLHFPPSESG-----GGGSTKRLG--WLAWFHGLFLPEAFDSLPLPILALVWHGVALISMMALR---SGGAANASLQGAWTEAGQEDPLLGEGESYSNKGFSGSGSVGGDGGSPGESANRSIVETVASSLGLGWVLEGWKVAQTAWQDVLIFSFFFLLAVAACA 417
            MSDAAARRR +IL+   +RMKLVSG   +  Q+  + +     A  +   G+  A+       +  GT  S+  G+RA NR                                                           P++L     + SA+    LTTGGN LRKR+ ASR GD       T    G ++    P SP PSLL+ LTASD ++R W LC AG++ G+W+  LNAT LA +R     +    H+AR ALDEFVA        PP+  G     G     R+G   L     LFLPE FDS PLP++AL+ HGV + S+  LR     G A  +++  W       PL GEG      G SG     G   S  + ++RS++ ++A + GLG  LE  KV Q AWQD+LIFSFFFLLA+A CA
Sbjct:    1 MSDAAARRRTRILSGSKDRMKLVSG---SSIQDKSEVDAPPEAAYDLASGGKEEAEDSN---VSEVGT--SKEAGIRARNR--------------RRLQARNIKIETVPTEADHLNAGQSDMPPGTNDTPLGGSEKRSSSPSLLPYEGFSHSASNTGALTTGGNVLRKRFQASRYGDRG--ATATDANAGVSSRPENPTSPAPSLLQALTASDVLLRLWPLCAAGLLFGVWVAGLNATVLARVRGSTGMESPAHHQARDALDEFVANVGAI--SPPNIGGDKDYLGLWDRDRIGANVLRRIRNLFLPEVFDSFPLPLIALILHGVLIFSLGMLRVTSRKGTAGDNIKD-WAST---VPLEGEG-----GGESGREGETGAKASLDQVSDRSMLASLAHTFGLGPALEALKVLQAAWQDMLIFSFFFLLALALCA 399
The following BLAST results are available for this feature:
BLAST of NO05G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28141.12.600e-3435.71hypothetical protein Naga_100036g44 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003606NSK003606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02720.1NO05G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584468gene_3075Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g44gene2429Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02720.1NO05G02720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02720 ID=NO05G02720|Name=NO05G02720|organism=Nannochloropsis oceanica|type=gene|length=1548bp
AACACAAAGAGCACAGTTATGAGCGATGCAGCAGCCCGTCGACGGGCCAA
GATTCTGGCACAAAGGGGTAACCGGATGAAGCTGGTGTCGGGCTTGGGGG
CCGCGATTGCACAGgtaagctgatggatggaaagtgcgattgaaggcctg
cttatgattggacctctgacccaccggcctcggttagcagGAGGGCAAGG
ACGAAGAAACAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGCAGGAAGA
CTTGCTGCAGATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGGGCACTTG
CGGCAGTGAGACAGGCGGCGTTCGCGCACTGAATCGACGACGCTTGCAGG
CCCGTAACATTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGATTCTGTA
CAAAAAGAGCAGCAGCAAGTAGAAAATTCAAATCTTGGGGACACGAATGT
CGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGTTCCCCGT
CTTCCCCTCCACATCCTACTGTGCTTGCCAGCATGGCTCTCACTGCGTCT
GCTACCTTGACAACGGGGGGCAACACTCTGCGTAAACGGTATCATGCATC
TCGGGGCGACAACGACGACATCGTCGAGAAAACGACGACCAAAAATGGAT
gtaagggagaggatgtatgcagcatgcttatttcatcgaaattatgctta
gcgattgtccgataagccatattcttacatcttaataccatttgcttgta
cacctcttgctcccttcaacgaaaaacagCCACCACTCTTCGCGTCGGGC
CACCCTCTCCTCCCTCCCTCCTCAAGACCCTGACTGCCTCGGACGCCATG
GTCCGGTTTTGGCTCCTGTGCCTGGCCGGCGTCATTTCCGGAATCTGGAT
CACGGTCTTGAATGCCACTTTTCTAGCAGACCTTCGGATGCAAGCACAGC
GGCAGCAGCAGCACGAAGCCAGAGCGGCATTGGACGAGTTTGTGGCCAAG
GCCAGTCCGTCCCTCCATTTCCCCCCTTCCGAGTCAGGGGGTGGAGGCAG
CACCAAACGACTTGGGTGGTTAGCATGGTTTCATGGGTTATTCTTACCAG
AGGCCTTTGATTCCTTGCCCTTGCCCATCCTGGCATTGGTTTGGCACGGT
GTGGCTTTGATTTCCATGATGGCACTGCGATCAGGAGGAGCGGCAAATGC
TAGCTTGCAGGGAGCATGGACGGAGGCCGGGCAGGAAGATCCGTTGCTAG
GGGAAGGTGAAAGTTATAGCAATAAGGGTTTTAGCGGTAGTGGCAGTGTC
GGGGGTGATGGTGGTTCGCCAGGGGAAAGTGCGAACAGGTCAATTGTTGA
GACGGTAGCGAGCTCATTGGGGTTGGGGTGGGTGTTGGAGGGATGGAAGG
TGGCGCAGACGGCTTGGCAAGATGTGCTGATATTTAGTTTTTTCTTTCTT
TTGGCTGTGGCGGCTTGTGCATGAAGAGACACACGATCATGTGGACAACA
GAGAAAGCAAAGACAATTTGGAAAGGCGGAATGAAAATTAATGACTAA
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protein sequence of NO05G02720.1

>NO05G02720.1-protein ID=NO05G02720.1-protein|Name=NO05G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSDAAARRRAKILAQRGNRMKLVSGLGAAIAQEGKDEETAATTAAAVGPA
GRLAADGEGGKATAPEGTCGSETGGVRALNRRRLQARNILLSTATLAAAD
SVQKEQQQVENSNLGDTNVAASAEASSCSPSPRSPSSPPHPTVLASMALT
ASATLTTGGNTLRKRYHASRGDNDDIVEKTTTKNGSTTLRVGPPSPPSLL
KTLTASDAMVRFWLLCLAGVISGIWITVLNATFLADLRMQAQRQQQHEAR
AALDEFVAKASPSLHFPPSESGGGGSTKRLGWLAWFHGLFLPEAFDSLPL
PILALVWHGVALISMMALRSGGAANASLQGAWTEAGQEDPLLGEGESYSN
KGFSGSGSVGGDGGSPGESANRSIVETVASSLGLGWVLEGWKVAQTAWQD
VLIFSFFFLLAVAACA*
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Synonyms
Publications