NO05G02660, NO05G02660 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO05G02660 vs. NCBI_GenBank
Match: EWM28111.1 (expressed unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 493.4 bits (1269), Expect = 6.200e-136 Identity = 250/379 (65.96%), Postives = 297/379 (78.36%), Query Frame = 0 Query: 1 MRPRLTRCESSLQNRRXXXXXXXXXXXXXSKPVPTPRVQFEGFDEAYGPAIGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTPMFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDTEGGAYFHLRIAHVQEEKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPELMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFDSVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITIV 380 +RPRLTRCESSLQNRR + +PRV+FEGF+E GPA+GDTLS++Y+PAG+G D+PL++LEEDE ASPCLLYNFNGW+GEETPLRTP+FP+GDGT++ATVH+PNYAKVLDCIVSDGQLAFDTE G +FHLRIAHVQEE+DG VYNF QG+DGS+TLTGV+A NDARELERMIE+ELSAR + +L +E + + V + E L + S G+ + L E DAGGEAARQLAS+GS+GVHVAAL+DVGN+PQQLRAEA AVGE LGISSSMIINELRE+FDSVTDA++LT ELP+AL++MGFD L ELE LC+ VQG E P GR L+LEHFMRIF +LD ENVGI IV Sbjct: 28 IRPRLTRCESSLQNRR--SSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLF--DEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAP-AAGRCLTLEHFMRIFHLLDTENVGIVIV 401
BLAST of NO05G02660 vs. NCBI_GenBank
Match: CBN78168.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 127.5 bits (319), Expect = 8.900e-26 Identity = 103/335 (30.75%), Postives = 167/335 (49.85%), Query Frame = 0 Query: 50 AIGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTPMFPRGD-GTMVATVHIPNYAKVLDCIVSDGQLAFDT-EGGAYFHLRIAHVQE-EKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPELMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFDSVTDAE--LLTFAELPQALSKMGF-DRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITI 379 A +T+ +IY P P L E ++ C FNGWDGEE + PM P GD G ++++PN+A+VLD +V+DG + +DT G ++H + HV+E +K G + + Q DG+L TG+ D +ELERM+++ A+ A + + +VD T +V + + + ++T D +D + Q++RAEA +GE+LG+ +M +NE R+AFD V D E LL F ++ + L K+GF D L + +L +L + LE + ++L FM +F LD+ ++GI I Sbjct: 107 AAEETVEIIYTP-------PTGLFEGADSLLYC--GGFNGWDGEEDGVTMPMMPAGDEGNFRISINVPNFARVLDFVVTDG-VRYDTGPEGLFYHAMVTHVREADKAGNIITYRQEADGTLIKTGMIEKVDPQELERMMDEATKAQ--AAXXXXXXVADPMVDETMAEVE----------QGLRQEITVTIDEQDAV----------------------------------QKMRAEASVLGERLGL-GNMQVNEARDAFD-VHDNEQGLLAFEDVGKVLDKLGFQDELDSAQLAEL-IGTHVLE-KRPDADTMTLTEFMYLFKALDDMDIGIDI 381
BLAST of NO05G02660 vs. NCBI_GenBank
Match: CEM24699.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 100.9 bits (250), Expect = 8.900e-18 Identity = 98/357 (27.45%), Postives = 155/357 (43.42%), Query Frame = 0 Query: 52 GDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEE--TPLRTPMFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDT-EGGAYFHLRIAHVQEEKD-GKVYNFLQ--GDDGSLT--LTGVEAANDARELER---------MIEDELSARNAGADR-PELMLG-EEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDI--------EDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFD--SVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITIV 380 GDTL V Y P P + + +NGWDG + P TPM GDGT+ TV +PN A +D ++DG + FDT + G Y+H+ + H+Q E D G + Q G DG +T TGV E E+ M + EL ++ ++ P + L E+ +G D V G+ + S GD+ E+ L E A + S + + + +L AE VGE LGI ++++E+R FD + D + P L ++GF L+ E++ + L + + + G +L+ F +F LD +VG+ +V Sbjct: 17 GDTLVVSYRP-------PPEAFPPQQQGQLYYMGGWNGWDGTQMHAPFMTPMLREGDGTLRCTVGVPNDALSVDFCITDG-IRFDTNDDGQYYHIHVTHIQREADNGNIICLRQDVGGDGQITEVQTGVIEKKSGEEFEQELNTAYEQYMKQKELGGSSSSSEAGPTITLVLEQDEEGQEHDTPAVEGENAGDGKLRLSMYSSGGDVGGIGGFEREEQLDEDRRKQLVKAELQRTQQSFKMDTKLTQGREHKSSKLFAEGSLVGEALGI-PRLVMSEIRNTFDRFDMDDTHTVPLERFPDLLDELGFSDLNAEDISQ--LVDKHILAQRPGANDCTLQEFCGVFKELDSADVGLEMV 362 The following BLAST results are available for this feature:
BLAST of NO05G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G02660 ID=NO05G02660|Name=NO05G02660|organism=Nannochloropsis oceanica|type=gene|length=1140bpback to top protein sequence of NO05G02660.1 >NO05G02660.1-protein ID=NO05G02660.1-protein|Name=NO05G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bpback to top Synonyms
Publications
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