NO05G02660, NO05G02660 (gene) Nannochloropsis oceanica

Overview
NameNO05G02660
Unique NameNO05G02660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr5:705358..706497 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:705358..706497 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO05G02660 vs. NCBI_GenBank
Match: EWM28111.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 493.4 bits (1269), Expect = 6.200e-136
Identity = 250/379 (65.96%), Postives = 297/379 (78.36%), Query Frame = 0
Query:    1 MRPRLTRCESSLQNRRXXXXXXXXXXXXXSKPVPTPRVQFEGFDEAYGPAIGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTPMFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDTEGGAYFHLRIAHVQEEKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPELMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFDSVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITIV 380
            +RPRLTRCESSLQNRR                + +PRV+FEGF+E  GPA+GDTLS++Y+PAG+G D+PL++LEEDE ASPCLLYNFNGW+GEETPLRTP+FP+GDGT++ATVH+PNYAKVLDCIVSDGQLAFDTE G +FHLRIAHVQEE+DG VYNF QG+DGS+TLTGV+A NDARELERMIE+ELSAR   +   +L   +E  +      + V  + E  L   +  S   G+ +  L E  DAGGEAARQLAS+GS+GVHVAAL+DVGN+PQQLRAEA AVGE LGISSSMIINELRE+FDSVTDA++LT  ELP+AL++MGFD L   ELE LC+ VQG E P   GR L+LEHFMRIF +LD ENVGI IV
Sbjct:   28 IRPRLTRCESSLQNRR--SSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLF--DEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAP-AAGRCLTLEHFMRIFHLLDTENVGIVIV 401          
BLAST of NO05G02660 vs. NCBI_GenBank
Match: CBN78168.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.5 bits (319), Expect = 8.900e-26
Identity = 103/335 (30.75%), Postives = 167/335 (49.85%), Query Frame = 0
Query:   50 AIGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTPMFPRGD-GTMVATVHIPNYAKVLDCIVSDGQLAFDT-EGGAYFHLRIAHVQE-EKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPELMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFDSVTDAE--LLTFAELPQALSKMGF-DRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITI 379
            A  +T+ +IY P       P  L E  ++   C    FNGWDGEE  +  PM P GD G    ++++PN+A+VLD +V+DG + +DT   G ++H  + HV+E +K G +  + Q  DG+L  TG+    D +ELERM+++   A+   A      + + +VD T  +V           +  + + ++T D +D +                                  Q++RAEA  +GE+LG+  +M +NE R+AFD V D E  LL F ++ + L K+GF D L + +L +L +    LE  +     ++L  FM +F  LD+ ++GI I
Sbjct:  107 AAEETVEIIYTP-------PTGLFEGADSLLYC--GGFNGWDGEEDGVTMPMMPAGDEGNFRISINVPNFARVLDFVVTDG-VRYDTGPEGLFYHAMVTHVREADKAGNIITYRQEADGTLIKTGMIEKVDPQELERMMDEATKAQ--AAXXXXXXVADPMVDETMAEVE----------QGLRQEITVTIDEQDAV----------------------------------QKMRAEASVLGERLGL-GNMQVNEARDAFD-VHDNEQGLLAFEDVGKVLDKLGFQDELDSAQLAEL-IGTHVLE-KRPDADTMTLTEFMYLFKALDDMDIGIDI 381          
BLAST of NO05G02660 vs. NCBI_GenBank
Match: CEM24699.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 100.9 bits (250), Expect = 8.900e-18
Identity = 98/357 (27.45%), Postives = 155/357 (43.42%), Query Frame = 0
Query:   52 GDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEE--TPLRTPMFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDT-EGGAYFHLRIAHVQEEKD-GKVYNFLQ--GDDGSLT--LTGVEAANDARELER---------MIEDELSARNAGADR-PELMLG-EEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDI--------EDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFD--SVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITIV 380
            GDTL V Y P       P       +      +  +NGWDG +   P  TPM   GDGT+  TV +PN A  +D  ++DG + FDT + G Y+H+ + H+Q E D G +    Q  G DG +T   TGV       E E+         M + EL   ++ ++  P + L  E+  +G   D   V     G+ +      S  GD+        E+ L E        A    +  S  +     +   +   +L AE   VGE LGI   ++++E+R  FD   + D   +     P  L ++GF  L+ E++ +  L  + +   + G    +L+ F  +F  LD  +VG+ +V
Sbjct:   17 GDTLVVSYRP-------PPEAFPPQQQGQLYYMGGWNGWDGTQMHAPFMTPMLREGDGTLRCTVGVPNDALSVDFCITDG-IRFDTNDDGQYYHIHVTHIQREADNGNIICLRQDVGGDGQITEVQTGVIEKKSGEEFEQELNTAYEQYMKQKELGGSSSSSEAGPTITLVLEQDEEGQEHDTPAVEGENAGDGKLRLSMYSSGGDVGGIGGFEREEQLDEDRRKQLVKAELQRTQQSFKMDTKLTQGREHKSSKLFAEGSLVGEALGI-PRLVMSEIRNTFDRFDMDDTHTVPLERFPDLLDELGFSDLNAEDISQ--LVDKHILAQRPGANDCTLQEFCGVFKELDSADVGLEMV 362          
The following BLAST results are available for this feature:
BLAST of NO05G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28111.16.200e-13665.96expressed unknown protein [Nannochloropsis gaditan... [more]
CBN78168.18.900e-2630.75expressed unknown protein [Ectocarpus siliculosus][more]
CEM24699.18.900e-1827.45unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003600NSK003600Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02660.1NO05G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584442gene_3069Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g39gene2434Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02660.1NO05G02660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02660 ID=NO05G02660|Name=NO05G02660|organism=Nannochloropsis oceanica|type=gene|length=1140bp
ATGCGACCACGCTTGACCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTC
CTCCTCCCCCTCGTCGTCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTC
CCACGCCCCGCGTGCAATTCGAAGGCTTTGACGAGGCATACGGACCCGCA
ATCGGGGATACCTTGTCCGTCATCTACAACCCGGCCGGTCAAGGCGAGGA
TGCCCCCTTGTCGCTGCTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCC
TATACAATTTCAATGGGTGGGACGGGGAAGAGACGCCACTGCGGACCCCC
ATGTTTCCTCGGGGGGACGGCACAATGGTGGCCACGGTGCATATTCCTAA
CTATGCCAAGGTTTTGGATTGCATTGTCTCGGACGGCCAACTGGCTTTTG
ATACGGAGGGCGGCGCGTACTTTCATCTTCGCATCGCTCATGTTCAAGAA
GAGAAGGACGGCAAGGTCTACAATTTCTTGCAAGGTGACGATGGTTCCTT
GACCTTGACTGGAGTGGAGGCCGCCAACGACGCCCGAGAATTAGAACGAA
TGATAGAAGACGAGCTGTCTGCACGCAATGCTGGCGCAGATCGCCCGGAA
CTCATGCTGGGCGAGGAGGTGGTGGATGGGACAGGCGTGGATGTTGCTAA
TGTGGTGGCATTCTTGGAAGGGGAATTGGAGCAGGCGCAGGATAAATCGT
CAATCACCGGGGATATTGAAGACTTGTTGCTGGAGACGGGGGATGCGGGA
GGGGAGGCTGCAAGGCAGTTGGCCTCGACGGGATCCATTGGTGTGCATGT
CGCGGCGCTGAAGGACGTGGGTAATATCCCGCAGCAACTGCGGGCAGAGG
CAATCGCAGTGGGGGAGCAGCTGGGGATCAGCTCGAGTATGATTATCAAT
GAGCTGAGAGAGGCATTTGACAGTGTGACGGACGCCGAACTGTTGACCTT
TGCGGAGCTGCCACAAGCATTAAGCAAAATGGGGTTTGACCGTCTAAGCA
CGGAGGAGCTGGAGAAGTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCG
AAGGGGGGGGGGAGGTTGCTGAGTTTAGAGCATTTTATGAGAATTTTCTT
CATTTTGGATGAGGAGAATGTGGGGATTACGATTGTGTAG
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protein sequence of NO05G02660.1

>NO05G02660.1-protein ID=NO05G02660.1-protein|Name=NO05G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MRPRLTRCESSLQNRRSSSPSSSSKAAAGSKPVPTPRVQFEGFDEAYGPA
IGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTP
MFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDTEGGAYFHLRIAHVQE
EKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPE
LMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAG
GEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIIN
ELREAFDSVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVP
KGGGRLLSLEHFMRIFFILDEENVGITIV*
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Synonyms
Publications