NO05G02600, NO05G02600 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G02600 vs. NCBI_GenBank
Match: EWM28135.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 294.7 bits (753), Expect = 6.900e-76 Identity = 186/333 (55.86%), Postives = 209/333 (62.76%), Query Frame = 0 Query: 176 NARLLDTLLTDNYTNNPAVGVSDAGPYPPSAAMGFDATLAATTLSMGNLELRSEDIKIANAQTFLMAQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSSALFSQSAXXXXXXXXXXXXPILSQQQAFAQSVYTKYGPQCNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSGMGGSIGGHGAPSSAFSASDTLSPHGSNPLMIGSGGAPAPLHALQRWQAHLASQAALQQ 509 NA +L+ LL D Y NP + PS+ DA+LA TL MG L +R E+ + NA+ F+M XXXXXXXXXXXX GL ++LF+Q+A P L QQQ AQ+VY+KYG NGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNN DSALQAI+AMNGFVVGHKRLKVEQKKDK+SL M G GGS+ AP+S+ S S + P G P HALQRWQ + A LQQ Sbjct: 186 NAAILNNLLGDKYRQNPPGSLVSG----PSSTTDLDASLAVATLGMGGLGIRQEEAHMVNAEAFMM-------------------XXXXXXXXXXXXFMQTFHRPQGPPRVSVDGMGTGLPASLFNQNA-GLLAAQQVQPNPTLVQQQTLAQNVYSKYGIVTNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKASLHMPGFGGSMAAPVAPASSPDLSHIQSMNALGP------GVSVPFHALQRWQPQFSGAAPLQQ 488
BLAST of NO05G02600 vs. NCBI_GenBank
Match: CCA25727.1 (CUGBP and ETR3like factor putative [Albugo laibachii Nc14]) HSP 1 Score: 149.8 bits (377), Expect = 2.800e-32 Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 0 Query: 340 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDK 444 G+ + PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+T+G VISARIMV+K TGRSRGFGFVSY+NP SA AI+ MNGF VG KRLKV+ KK++ Sbjct: 128 GFAPQIAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATYGNVISARIMVEKETGRSRGFGFVSYDNPPSADAAIKGMNGFQVGRKRLKVQHKKER 231
BLAST of NO05G02600 vs. NCBI_GenBank
Match: XP_002903343.1 (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >EEY55767.1 CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4]) HSP 1 Score: 149.8 bits (377), Expect = 2.800e-32 Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSG 451 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+TFG VISARIMV+K TGRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+KS M G Sbjct: 133 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKSQGPMFG 235
BLAST of NO05G02600 vs. NCBI_GenBank
Match: XP_008605678.1 (hypothetical protein SDRG_01901 [Saprolegnia diclina VS20] >EQC40834.1 hypothetical protein SDRG_01901 [Saprolegnia diclina VS20]) HSP 1 Score: 149.1 bits (375), Expect = 4.700e-32 Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSGM--GGSIGG 458 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+TFG VISARIMV+K TGRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+K + M GG++ G Sbjct: 162 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGGMYEDDMDQGGAVAG 273
BLAST of NO05G02600 vs. NCBI_GenBank
Match: XP_024574275.1 (cug-bp-and etr-3-like [Plasmopara halstedii] >CEG37906.1 cug-bp-and etr-3-like [Plasmopara halstedii]) HSP 1 Score: 148.7 bits (374), Expect = 6.100e-32 Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSG 451 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+TFG VISARIMV+K TGRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+K+ M G Sbjct: 133 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKNQNPMFG 235
BLAST of NO05G02600 vs. NCBI_GenBank
Match: OQR91773.1 (CUG-BP- and ETR-3-like factor [Achlya hypogyna]) HSP 1 Score: 148.3 bits (373), Expect = 8.000e-32 Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSL 447 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+TFG VISARIMV+K TGRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+K + Sbjct: 150 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGGM 248
BLAST of NO05G02600 vs. NCBI_GenBank
Match: CCI45842.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 147.9 bits (372), Expect = 1.000e-31 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSGMGGSIGGH 459 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+T+G VISARIMV+K TGRSRGFGFVSY+NP SA AI+ MNGF VG KRLKV+ KK++ M G + GH Sbjct: 136 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATYGNVISARIMVEKETGRSRGFGFVSYDNPPSADAAIKGMNGFQVGRKRLKVQHKKERDP--NQAMYGDMCGH 244
BLAST of NO05G02600 vs. NCBI_GenBank
Match: XP_009821437.1 (hypothetical protein H257_00439 [Aphanomyces astaci] >ETV89037.1 hypothetical protein H257_00439 [Aphanomyces astaci]) HSP 1 Score: 147.5 bits (371), Expect = 1.400e-31 Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLG 448 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F TFG VISARIMV+K +GRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+K S G Sbjct: 155 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFQTFGNVISARIMVEKESGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGSGG 254
BLAST of NO05G02600 vs. NCBI_GenBank
Match: XP_002903339.1 (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >EEY55763.1 CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4]) HSP 1 Score: 147.5 bits (371), Expect = 1.400e-31 Identity = 78/119 (65.55%), Postives = 88/119 (73.95%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSG---MGGSIGGHGAPSS 464 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+TFG VISARIMV+K TGRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+KS M G M S A SS Sbjct: 128 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKSQGQMFGEMPMDNSANDMAAQSS 246
BLAST of NO05G02600 vs. NCBI_GenBank
Match: XP_012200994.1 (hypothetical protein SPRG_06214 [Saprolegnia parasitica CBS 223.65] >KDO28167.1 hypothetical protein SPRG_06214 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 146.7 bits (369), Expect = 2.300e-31 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 0 Query: 348 PGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNPDSALQAIEAMNGFVVGHKRLKVEQKKDKSSLGMSGMG-GSIGG 458 PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+ F+TFG VISARIMV+K TGRSRGFGFVSY+N SA AI+ MNGF VG KRLKV+ KK+K + M G++ G Sbjct: 158 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGGMYEDDMDQGAVAG 268 The following BLAST results are available for this feature:
BLAST of NO05G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G02600 ID=NO05G02600|Name=NO05G02600|organism=Nannochloropsis oceanica|type=gene|length=3795bpback to top protein sequence of NO05G02600.1 >NO05G02600.1-protein ID=NO05G02600.1-protein|Name=NO05G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bpback to top protein sequence of NO05G02600.2 >NO05G02600.2-protein ID=NO05G02600.2-protein|Name=NO05G02600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=624bpback to top protein sequence of NO05G02600.3 >NO05G02600.3-protein ID=NO05G02600.3-protein|Name=NO05G02600.3|organism=Nannochloropsis oceanica|type=polypeptide|length=624bpback to top Synonyms
Publications
|