NO05G02580, NO05G02580 (gene) Nannochloropsis oceanica

Overview
NameNO05G02580
Unique NameNO05G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length730
Alignment locationchr5:678806..679535 -

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Properties
Property NameValue
DescriptionDimeric alpha-beta barrel
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:678806..679535 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO05G02580 vs. NCBI_GenBank
Match: EWM28126.1 (Dimeric alpha-beta barrel [Nannochloropsis gaditana])

HSP 1 Score: 171.8 bits (434), Expect = 1.700e-39
Identity = 89/161 (55.28%), Postives = 113/161 (70.19%), Query Frame = 0
Query:    1 MDKWLRKIDRY--SPFPLFLVGLFAGCTLTFLLSRPNHQTMPQKPVVATASHPRRPVPGAFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALKANISGESYIESDLGFV 160
            M++ LRK+ +   SP P F  G+  G  ++F              VV  +S  R+ +PGAFWL V VTF+R+EDV+IFK AFAPLA  V++NE  TLSY +A SDKDP  VL+FERYVDK+DAYL VHR S  F+VFRPQLAA++A ISGESYIES++GF+
Sbjct:    1 MERTLRKMFKTCGSPLPAFWCGVLLGLAMSF--------------VVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFM 147          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: OEU19805.1 (hypothetical protein FRACYDRAFT_216959 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.6 bits (231), Expect = 6.000e-16
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 0
Query:   59 FWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALK----ANISGESYIESDLGF 159
            F L+V+++F   E  + F   F PLA  VK  E  TL+Y + +SD DPL V+I ERY DK++AYL++H+SS  F  FRP+L A++      ISG SYI+S +GF
Sbjct:   11 FSLLVTISFDSIEYKQQFLKDFKPLADYVKTMETDTLAYEVLLSDNDPLKVMILERYRDKENAYLKIHKSSVPFLAFRPKLQAMQEKGHVTISGNSYIDSGIGF 114          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: XP_002184789.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43848.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 93.2 bits (230), Expect = 7.800e-16
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 0
Query:   58 AFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAAL----KANISGESYIESDLGF 159
            AF L V++ F  S+  E F    A +A  V+ +E  TLSY + +SDKD L V++ ERY DK+ A+LRVHR+S+ FQ FRP+L A+    K  ISGES+++S +GF
Sbjct:    5 AFSLFVTLKFSDSQFKEDFLRDIALVATHVRNSEPDTLSYEVLLSDKDDLTVVVMERYRDKEHAFLRVHRNSQPFQEFRPKLKAMQDDGKVTISGESFLDSGIGF 109          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: XP_013897728.1 (hypothetical protein MNEG_9254 [Monoraphidium neglectum] >KIY98708.1 hypothetical protein MNEG_9254 [Monoraphidium neglectum])

HSP 1 Score: 87.8 bits (216), Expect = 3.300e-14
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   59 FWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALKANISGESYIESDLGFV 160
            F L VS+TF+  E  + + AA+ P+   V+ NE GTLSY L I D +PL  L++ERYVD+  AY  VHR+SE+   F+   + +K  + G+SY+E++ GF+
Sbjct:   11 FVLAVSLTFKDLEQRDKWVAAWLPMVDQVRANEPGTLSYELCIGDTEPLKALVYERYVDR-AAYEDVHRTSEAMAAFKEVTSKIKMQVQGQSYVETNHGFM 110          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: XP_002290903.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92655.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.1 bits (196), Expect = 6.900e-12
Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = 0
Query:   57 GAFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEA------------------GTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALKAN----ISGESYIESDLGFV 160
            GAF L+V++ F   +    F     P+   V  NE                    TLSY +AISDK+PL VL+ ERY DK++ YL VH+S + F  FR QL  ++      I+GESY+E+ LG+V
Sbjct:   63 GAFVLLVNMKFATIDHRNTFLKLMEPVCNYVYSNEGPAISSTSTSXXSSGKLEQTTLSYQVAISDKNPLQVLVMERYSDKENGYLTVHKSGKEFLKFREQLKGMQDRGEVVINGESYLETSLGYV 187          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: XP_005645517.1 (hypothetical protein COCSUDRAFT_83532 [Coccomyxa subellipsoidea C-169] >EIE20973.1 hypothetical protein COCSUDRAFT_83532 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 77.8 bits (190), Expect = 3.400e-11
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   58 AFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALK---ANISGESYIESDLGFV 160
            AF LV++  ++   D ++F + F PLA  V  +E  TL+Y L++SDK+PL ++IFERY  +  A   VH+ S  F+ F+   A       N +GESYIE DLG++
Sbjct:   43 AFLLVITHKYKTIRDRDLFISLFEPLAKYVVHHEPETLAYELSVSDKNPLEIIIFERYTSQ-AALTEVHQQSAPFKKFKKAWAEANLEYENKTGESYIEKDLGYM 146          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: XP_005842351.1 (hypothetical protein GUITHDRAFT_62719 [Guillardia theta CCMP2712] >EKX55371.1 hypothetical protein GUITHDRAFT_62719 [Guillardia theta CCMP2712])

HSP 1 Score: 75.1 bits (183), Expect = 2.200e-10
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 0
Query:   47 TASHPRRPVPGAFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALK----ANISGESYIESDLGF 159
            T +   +P   +F L+V VTF   +  E FK  +A  A   +++EA TLSY LA+SD+D L  +I ER+  KDD YL  H+ S  F+ +R +L  L+      ++G+SY +S+LG+
Sbjct:   10 TRADREKPTIASFILIVHVTFSSKKVKEDFKVLYAEEAEFCRKSEANTLSYELALSDRDELAGVIIERFRSKDD-YLS-HKESSVFKRYREKLKKLEESGDVKLNGQSYYQSNLGY 123          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: XP_011400553.1 (Autophagy-related protein 9 [Auxenochlorella protothecoides] >KFM27570.1 Autophagy-related protein 9 [Auxenochlorella protothecoides])

HSP 1 Score: 68.6 bits (166), Expect = 2.100e-8
Identity = 41/95 (43.16%), Postives = 51/95 (53.68%), Query Frame = 0
Query:   67 FRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALKANI--SGESYIESDLGFV 160
            F    D +IF   F PLA  V E+E  TLSY LAI+D DP +VLI ERY  K D    VH  SE F  F+     L      +G+SY E  +G++
Sbjct:  597 FESEADRDIFIDLFRPLAKYVAEHEPRTLSYDLAIADTDPTLVLIHERYATKKD-LTEVHHVSEPFLAFKKATQELPFPFVKTGQSYYEQGIGYM 690          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: PSC70176.1 (Extracellular basic protease [Micractinium conductrix])

HSP 1 Score: 67.8 bits (164), Expect = 3.500e-8
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   57 GAFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLR-VHRSSESFQVFRPQLAALKA 145
            G F L V + F   +D + F A + PLA  VKENE GTL Y   ++D +PL VL+FERY  K  AY    HR+S+ +  F+ Q A  +A
Sbjct:    5 GIFVLCVYLKFANVQDRDEFIAEWTPLAKWVKENEPGTLGYEAMVADTNPLKVLVFERYTSK--AYFNDAHRTSQPYLAFKEQQAKWRA 91          
BLAST of NO05G02580 vs. NCBI_GenBank
Match: PRW33786.1 (Autophagy-related 9 [Chlorella sorokiniana])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0
Query:   60 WLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLAISDKDPLMVLIFERYVDKDDAYLR-VHRSSESFQVFRPQLAALK----ANISGESYIESDLG 158
            WL  +    R E +  F   +APLA  VK +E GTL+Y +AI+D DPL + +FERY  K  AY   VH++SE +  F+   A  +      ++G+SY E+ +G
Sbjct:   14 WLKFASVADRDEFIHKF---WAPLAEYVKAHEHGTLAYEIAIADSDPLKIQVFERYQTK--AYFTDVHQTSEPYLAFKAAQAPWRKEHAVEVTGQSYYETGIG 111          
The following BLAST results are available for this feature:
BLAST of NO05G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM28126.11.700e-3955.28Dimeric alpha-beta barrel [Nannochloropsis gaditan... [more]
OEU19805.16.000e-1647.12hypothetical protein FRACYDRAFT_216959 [Fragilario... [more]
XP_002184789.17.800e-1647.62predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_013897728.13.300e-1443.56hypothetical protein MNEG_9254 [Monoraphidium negl... [more]
XP_002290903.16.900e-1238.40predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005645517.13.400e-1140.95hypothetical protein COCSUDRAFT_83532 [Coccomyxa s... [more]
XP_005842351.12.200e-1038.79hypothetical protein GUITHDRAFT_62719 [Guillardia ... [more]
XP_011400553.12.100e-843.16Autophagy-related protein 9 [Auxenochlorella proto... [more]
PSC70176.13.500e-843.82Extracellular basic protease [Micractinium conduct... [more]
PRW33786.11.700e-738.83Autophagy-related 9 [Chlorella sorokiniana][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003592NSK003592Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02580.1NO05G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584412gene_3059Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g31gene2441Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02580.1NO05G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02580 ID=NO05G02580|Name=NO05G02580|organism=Nannochloropsis oceanica|type=gene|length=730bp
CAACAGGTACAATGGACAAGTGGCTGCGAAAGATCGACCGCTATTCCCCT
TTCCCATTATTCTTAGTTGGCCTGTTCGCGGGCTGTACTTTGACATTTCT
TTTGAGCCGTCCAAACCATCAAACGATGCCACAGAAACCTGTCGTCGCCA
CTGCCAGTCACCCACGCAGACCAGTCCCAGgttcgtgtttggaggacagc
agaggccccttgcaaaagttctgattttcacaacttgttcagtgactcgc
actttgcgaggcgatccaaaggctcctcttccttgcttactcctcgtttg
ccacccaccttcccattatttgtccccctaaactcccctttcgctctttt
tcaaatccgtagGTGCCTTCTGGTTGGTTGTATCCGTGACTTTCCGAAGA
TCTGAGGACGTGGAGATCTTTAAGGCCGCCTTTGCACCGCTTGCCGTCGT
CGTAAAAGAAAACGAAGCCGGCACATTGTCATATGGTTTGGCCATAAGTG
ACAAGGACCCTCTCATGGTCCTAATATTCGAGCGCTACGTAGACAAGGAT
GATGCGTATCTGCGTGTACATCGAAGTAGTGAGTCGTTCCAGGTGTTTCG
TCCCCAGCTTGCGGCCTTGAAAGCGAACATTTCGGGAGAGTCTTATATCG
AGAGCGACTTGGGGTTTGTGTGAGTCAAAGCGATGGAGACTTTGTGAATA
AATATTTTCGACAAAAAATCTAGATCTGTA
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protein sequence of NO05G02580.1

>NO05G02580.1-protein ID=NO05G02580.1-protein|Name=NO05G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MDKWLRKIDRYSPFPLFLVGLFAGCTLTFLLSRPNHQTMPQKPVVATASH
PRRPVPGAFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLA
ISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALKANISGES
YIESDLGFV*
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Synonyms
Publications