NO05G02520, NO05G02520 (gene) Nannochloropsis oceanica

Overview
NameNO05G02520
Unique NameNO05G02520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length732
Alignment locationchr5:667223..667954 +

Link to JBrowse

Properties
Property NameValue
DescriptionPuff-specific protein bx42
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:667223..667954 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR017862SKI-int_prot_SKIP
Homology
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: EWM28131.1 (puff-specific protein bx42 [Nannochloropsis gaditana])

HSP 1 Score: 280.8 bits (717), Expect = 4.000e-72
Identity = 139/164 (84.76%), Postives = 154/164 (93.90%), Query Frame = 0 
Query:    1 MAAVQRDKLRLERRKELERDMRKDNMRGAMRKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFDKGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGR 165
            +AA QRDKLR+ERRKELE   RKDNMRGAMRKGK+DRDGERDISEKIALGMHVG+AKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVY++ALFDKG G +IYRPRGD+GVGGLDEDGG +A+AQY+KIAN+DKF+PDRGFAGADY  GGQ RDKPVQFE++GGR
Sbjct:  423 VAAAQRDKLRVERRKELEXXXRKDNMRGAMRKGKLDRDGERDISEKIALGMHVGSAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYNKALFDKGTGSSIYRPRGDVGVGGLDEDGGADAEAQYKKIANADKFRPDRGFAGADYHGGGQARDKPVQFEREGGR 586
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: XP_023756747.1 (SNW/SKI-interacting protein A-like [Lactuca sativa] >PLY90699.1 hypothetical protein LSAT_8X96801 [Lactuca sativa])

HSP 1 Score: 115.5 bits (288), Expect = 2.200e-22
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEFVE--KGGKR-KDPLGHIG 203
            +K K+ RD +RDISEK+ALGM  G A   G+ +YD RLFNQ  G+++GFG ED+YNVY + LF  +     +YRP+ D      D +    AD Q  KI  +D+FKPD+GF GA+ ++G   RD+PV+FE             KE  EE D FG+ +F+   KGGK+  D +G  G
Sbjct:  412 KKSKITRDRDRDISEKVALGMASGGAARGGEVMYDQRLFNQEKGMDSGFGTEDQYNVYDKGLFTAQPTLSTLYRPKKD-----ADGEMYGGADEQIEKIRKTDRFKPDKGFTGANEKAG--PRDRPVEFE-------------KEVAEEADPFGLDQFLTQVKGGKKAMDKVGSSG 567
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: XP_023756749.1 (SNW/SKI-interacting protein A-like [Lactuca sativa] >PLY90707.1 hypothetical protein LSAT_8X96740 [Lactuca sativa])

HSP 1 Score: 115.5 bits (288), Expect = 2.200e-22
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEFVE--KGGKR-KDPLGHIG 203
            +K K+ RD +RDISEK+ALGM  G A   G+ +YD RLFNQ  G+++GFG ED+YNVY + LF  +     +YRP+ D      D +    AD Q  KI  +D+FKPD+GF GA+ ++G   RD+PV+FE             KE  EE D FG+ +F+   KGGK+  D +G  G
Sbjct:  422 KKSKITRDRDRDISEKVALGMASGGAARGGEVMYDQRLFNQEKGMDSGFGTEDQYNVYDKGLFTAQPTLSTLYRPKKD-----ADGEMYGGADEQIEKIRKTDRFKPDKGFTGANEKAG--PRDRPVEFE-------------KEVAEEADPFGLDQFLTQVKGGKKAMDKVGSSG 577
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: XP_006429606.1 (SNW/SKI-interacting protein [Citrus clementina] >XP_006481207.1 PREDICTED: SNW/SKI-interacting protein [Citrus sinensis] >ESR42846.1 hypothetical protein CICLE_v10011323mg [Citrus clementina])

HSP 1 Score: 114.4 bits (285), Expect = 5.000e-22
Identity = 74/168 (44.05%), Postives = 100/168 (59.52%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKR 195
            +K K+ RD +RDISEK ALGM    A   G+ +YD RLFNQ  G+++GF  +D+YNVY + LF  +     +YRP+ D      D+  G  AD Q  KI  +D+FKPD+GFAG+  +SG   RD+PV+FEK+               EE D FG+ EF   V+KGGK+
Sbjct:  422 KKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDAD----DDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSG--PRDRPVEFEKEA--------------EEADPFGLDEFLTEVKKGGKK 569
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: KDO64128.1 (hypothetical protein CISIN_1g045842mg [Citrus sinensis])

HSP 1 Score: 114.4 bits (285), Expect = 5.000e-22
Identity = 74/168 (44.05%), Postives = 100/168 (59.52%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKR 195
            +K K+ RD +RDISEK ALGM    A   G+ +YD RLFNQ  G+++GF  +D+YNVY + LF  +     +YRP+ D      D+  G  AD Q  KI  +D+FKPD+GFAG+  +SG   RD+PV+FEK+               EE D FG+ EF   V+KGGK+
Sbjct:  422 KKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDAD----DDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSG--PRDRPVEFEKEA--------------EEADPFGLDEFLTEVKKGGKK 569
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: GAY32280.1 (hypothetical protein CUMW_001580 [Citrus unshiu])

HSP 1 Score: 114.4 bits (285), Expect = 5.000e-22
Identity = 74/168 (44.05%), Postives = 100/168 (59.52%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKR 195
            +K K+ RD +RDISEK ALGM    A   G+ +YD RLFNQ  G+++GF  +D+YNVY + LF  +     +YRP+ D      D+  G  AD Q  KI  +D+FKPD+GFAG+  +SG   RD+PV+FEK+               EE D FG+ EF   V+KGGK+
Sbjct:  422 KKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDAD----DDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSG--PRDRPVEFEKEA--------------EEADPFGLDEFLTEVKKGGKK 569
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: XP_020255852.1 (SNW/SKI-interacting protein [Asparagus officinalis] >XP_020255853.1 SNW/SKI-interacting protein [Asparagus officinalis])

HSP 1 Score: 114.0 bits (284), Expect = 6.500e-22
Identity = 69/173 (39.88%), Postives = 100/173 (57.80%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKRKDPLG 200
            +K K+ RD +RD+SEK+ALGM    A  TG+ +YD RLFNQ  G+E+GF  +D+YNVY + LF  +     +YRP+ D      D D    AD Q  K+  +++FKPD+GF GA  +  G  R++PV+F+K               +EE D FG+ +F   V++G K  D +G
Sbjct:  410 KKSKLTRDRDRDVSEKVALGMASTGAGRTGEVMYDQRLFNQEKGMESGFAADDQYNVYDKGLFTAQPTLSTLYRPKKD-----ADSDMYGGADEQLEKVMKTERFKPDKGFTGASDRPSGSKRERPVEFDK---------------QEENDPFGLEQFLTEVKRGKKAMDKIG 562
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: XP_021894699.1 (SNW/SKI-interacting protein [Carica papaya])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKRKDPLG 200
            +K K+ RD +RDISEK+ALGM    A   G+ +YD RLFNQ  G+++GF  +D+YN+Y + LF  +     +YRP+ D      D+D    AD Q  KI  +D+FKPD+GFAGA  ++G   RD+PV+FEK+               EE D FG+ +F   V+KG K  + +G
Sbjct:  421 KKSKITRDRDRDISEKVALGMASTGAGRVGEVMYDQRLFNQDKGMDSGFATDDQYNIYDKGLFTAQPTLSTLYRPKKD-----ADDDMYGGADEQLEKIMKTDRFKPDKGFAGASERAG--PRDRPVEFEKEA--------------EEADPFGLDQFLTEVKKGKKAMEKVG 572
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: GAV89766.1 (SKIP_SNW domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 112.8 bits (281), Expect = 1.500e-21
Identity = 75/176 (42.61%), Postives = 102/176 (57.95%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKRKDPLGHIG 203
            +K K+ RD +RDISEK+ALGM    A   G+ +YD RLFNQ  G+++GF  +D+YNVY + LF  +     +YRP+ D     +D D    AD Q  KI  +D+FKPD+ FAG   ++G   RDKPV+FE             KE+ EE D FG+ +F   V+KG K  D +G  G
Sbjct:  420 KKSKITRDRDRDISEKVALGMASTGAGRGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFQAQPTLSTLYRPKKD-----VDSDVYGGADEQLDKIMKTDRFKPDKAFAGTSEKAG--PRDKPVEFE-------------KEEAEEADPFGLDQFLTKVKKGKKAMDKVGSGG 575
[Close]
BLAST of NO05G02520 vs. NCBI_GenBank
Match: XP_024180226.1 (LOW QUALITY PROTEIN: SNW/SKI-interacting protein-like [Rosa chinensis] >XP_024184873.1 LOW QUALITY PROTEIN: SNW/SKI-interacting protein-like [Rosa chinensis])

HSP 1 Score: 112.8 bits (281), Expect = 1.500e-21
Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 0 
Query:   31 RKGKMDRDGERDISEKIALGMHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFD-KGAGGNIYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQGRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEF---VEKGGKRKDPLGHIG 203
            +K K+ RD +RDISEK+ALGM     +  G+ +YD RLFNQ  G+++GF  +D+YNVY + LF  +     +YRP+ D      D +    AD Q  KI  +D+FKPD+GF+GA  ++GG+ RD PV+FEKD               EE D FG+ +F   V+KG K  + +G  G
Sbjct:  423 KKSKITRDRDRDISEKVALGMASAGXRKRGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKD-----TDAEVYGGADEQLDKIMKTDRFKPDKGFSGASEKAGGR-RDGPVEFEKDA--------------EEADPFGLDQFLTEVKKGKKAMEKVGRGG 578
The following BLAST results are available for this feature:
BLAST of NO05G02520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28131.14.000e-7284.76puff-specific protein bx42 [Nannochloropsis gadita... [more]
XP_023756747.12.200e-2243.75SNW/SKI-interacting protein A-like [Lactuca sativa... [more]
XP_023756749.12.200e-2243.75SNW/SKI-interacting protein A-like [Lactuca sativa... [more]
XP_006429606.15.000e-2244.05SNW/SKI-interacting protein [Citrus clementina] >X... [more]
KDO64128.15.000e-2244.05hypothetical protein CISIN_1g045842mg [Citrus sine... [more]
GAY32280.15.000e-2244.05hypothetical protein CUMW_001580 [Citrus unshiu][more]
XP_020255852.16.500e-2239.88SNW/SKI-interacting protein [Asparagus officinalis... [more]
XP_021894699.11.100e-2141.62SNW/SKI-interacting protein [Carica papaya][more]
GAV89766.11.500e-2142.61SKIP_SNW domain-containing protein [Cephalotus fol... [more]
XP_024180226.11.500e-2141.48LOW QUALITY PROTEIN: SNW/SKI-interacting protein-l... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02520.1NO05G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02520.1NO05G02520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02520 ID=NO05G02520|Name=NO05G02520|organism=Nannochloropsis oceanica|type=gene|length=732bp
ATGGCGGCTGTGCAGCGTGACAAGCTGAGGTTGGAAAGAAGGAAGGAGTT
GGAGAGGGACATGCGGAAGGATAATATGAGGGGGGCCATGCGCAAGGGGA
AGATGGACAGGGATGGCGAGCGCGATATTTCCGAAAAAATCGCCCTGGGC
ATGCATGTGGGCAATGCGAAGCTGACGGGAGATGAGGTCTATGACTCCCG
ATTGTTCAACCAGGGAGGTGGGGTGGAGGCGGGATTTGGAGGGGAGGATG
AGTACAACGTTTATAGCAGGGCCTTGTTCGACAAGGGCGCCGGGGGGAAC
ATTTATCGCCCGAGGGGTGACTTGGGGGTGGGGGGATTGGATGAGGACGG
GGGACAGGAGGCGGATGCTCAGTATAGGAAGATTGCGAACAGCGACAAGT
TCAAGCCGGATAGGGGCTTTGCGGGCGCGGATTACCAGTCGGGGGGGCAG
GGACGTGATAAACCTGTGCAATTTGAAAAGGATGGGGGCAGAGAGGGAGG
GAAGATTGGAGAGGGAAAGGAAGACGAAGAGGAGGGGGACTTTTTCGGGG
TGGGGGAGTTTGTGGAGAAGGGAGGGAAGAGGAAGGACCCGCTCGGGCAC
ATTGGCGGGGGAGGGAGGGGGATCATGAGTGCCAGCTCGGCTGGATCGAA
GGAGGAGTTGGAGGAAGAAGGTGGAGGGAAGAGGCAGAAGATTGTATTTA
CGGAGGCGAGGAATGGACGACGGCGGGATTGA
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protein sequence of NO05G02520.1

>NO05G02520.1-protein ID=NO05G02520.1-protein|Name=NO05G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MAAVQRDKLRLERRKELERDMRKDNMRGAMRKGKMDRDGERDISEKIALG
MHVGNAKLTGDEVYDSRLFNQGGGVEAGFGGEDEYNVYSRALFDKGAGGN
IYRPRGDLGVGGLDEDGGQEADAQYRKIANSDKFKPDRGFAGADYQSGGQ
GRDKPVQFEKDGGREGGKIGEGKEDEEEGDFFGVGEFVEKGGKRKDPLGH
IGGGGRGIMSASSAGSKEELEEEGGGKRQKIVFTEARNGRRRD*
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Synonyms
Publications