NO05G02480, NO05G02480 (gene) Nannochloropsis oceanica

Overview
NameNO05G02480
Unique NameNO05G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3971
Alignment locationchr5:657050..661020 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:657050..661020 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO05G02480 vs. NCBI_GenBank
Match: EWM28124.1 (hypothetical protein Naga_100036g23 [Nannochloropsis gaditana])

HSP 1 Score: 236.1 bits (601), Expect = 5.100e-58
Identity = 453/898 (50.45%), Postives = 504/898 (56.12%), Query Frame = 0 
Query:    1 MSRSSEGVKKRGGRGGVTAERGGGGLPSQP-SAVDLKQLMEFAPPGTTKEQVLEMHTKFSDREQLKEEICKLWDAPIANPAEDEWQEIGNKKKKE-IAPVISSRGGRGGRIGHMDTRRGAPTGGTMTSPSFNDNRGAPPQSMGHRSTPSFGVINGSGGRGRSAPPGQRGGGVAGRSSGRGGAIVMVGGPGPTFSSSSTSRSMSVVPSHDGPGLRSSSSNGSAWTP--GGRSAAAVITEGPSPPVE----------------PTFPAPIVEPEVGRSSDGVVEEAQWDQPVSSSKPVAPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPDGVTLTEADILKMS-----NKNNADKAIGPKVPSTAAXXXXXXXXXXXXXXAPIEADRCAAGLKPEIKEGGVDATADSLGRVKLGQWEAISAVGDGGGGNILFGAFGVEESGANKKTATTSAADIWGGKAASTSPVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLGGPSLVSATSVKSIENAAAQRAAAVSAGG--SVSKPADAVKARPSPHQSPVKTVPGVPQHAMHPHGGHVQHGAAEQLMGAYSGYPPYGNGAYNLGGVGIPGGVVGAVGGVDAGSESAQTGYPGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMQAYGYGYYQTPYFYPNQAYVAQAAAAGLGGNQFGYGGRGXXXXXXXXXXXXXGQGVYGMDQFSAPPSQAASMHYGGGAMDY 872
            MSR+ EG KKR                      +DLKQLMEFAPPGTT +Q+LEM  KF +RE+LKEEICKLWDAP +NP EDEW ++G KKK+  +AP  SSRGGRGGR    D RRGAP G  +      D R A    +G R+ P   ++N   GRGRSAPPG RGG                               +         G ++SS NG+A  P  GGR        GPS   E                                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                 GPPDGV L EADILKM+      K++ADKAIGP  P++                A ++A       +PE     ++  A+ LGRVKLGQW+A++A GD GG NILFGAFGV++S +NKK+A TS ADIWGGK A TSPVVA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PGLGGP +V+ATSVK+IE+AA +    V AGG    + P DAVK RP+  QSP+K    VP H+ HPHG     G    L+G   GYPPY NG Y L   G  G  VGA  G D G +SA  GYPGQQ                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXX            PYFY NQA  A AA   +GG QF Y    XXXXXXXXXXXXX    YGMDQF  P  QA+SMHYGGGAMDY
Sbjct:    1 MSRTLEGGKKRXXXXXXXXXXXXXXXXQHSGEKLDLKQLMEFAPPGTTPDQILEMSKKFREREKLKEEICKLWDAPASNP-EDEWHDVGRKKKEPMVAP--SSRGGRGGRASPSDARRGAP-GQVL------DARLAGSSGLGARNGP---IVN---GRGRSAPPGHRGGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---------GPKASSGNGTAGPPRTGGRK------PGPSEMAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKEVVEPAPVSGPAPTRQGPGEQPPKMQHAKEVKESQAPLHTQQTRPTGPPDGVILKEADILKMNASAGLKKSDADKAIGPNTPASIG----ATDLPQRRVPAAVDAGVGKPARRPE--ADSLEGAAEGLGRVKLGQWDALNAGGDAGGSNILFGAFGVDDSSSNKKSAATSVADIWGGKPA-TSPVVAASAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGLGGPPIVNATSVKAIESAAQR----VGAGGPSKPTGPVDAVKGRPA-QQSPIKGGMSVPPHSSHPHG---VSGPHTDLVGGLGGYPPYMNGTYGLAAAG--GPPVGAAVGSDTGLDSASVGYPGQQ-------TAQPGAGAGVVSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSSAMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPPYFYQNQA--AYAAQGAVGGGQFAY---XXXXXXXXXXXXXXXXXXYGMDQFPGP--QASSMHYGGGAMDY 836
The following BLAST results are available for this feature:
BLAST of NO05G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28124.15.100e-5850.45hypothetical protein Naga_100036g23 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003583NSK003583Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02480.1NO05G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100036g23gene2449Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02480.1NO05G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02480 ID=NO05G02480|Name=NO05G02480|organism=Nannochloropsis oceanica|type=gene|length=3971bp
ATGTCCCGGAGTAGTGAAGGCGTGAAAAAGCGCGGCGGCCGCGGCGGTGT
CACTGCAGAAAGGGGCGGTGGCGGTCTACCTTCGCAGCCTTCCGCCGTGG
ACCTTAAGCAGgtacgtctttaatggaggcgagacaaggtagaacttagt
ggtgggcttccgtactgcgtttccctcgtccctcttccttgcttacttct
gacctttccatgcatacactccaaacggcatgactcaattaccgtgcagC
TGATGGAGTTTGCGCCGCCCGGTACGACCAAAGAACAGGTGCTGGAGATG
CACACAAAGTTTAGCGACCGGGAGCAGCTGAAGGAGGAAATTTGCAAGCT
GTGGGATGgtacgtacttttgttgtcgggacttgtcctttagcgagaaga
tgactgtttttccacagacatgattcgaaagaggaggatatctgaatcct
gctgtataagtgaaaaagcaggaggagaggaggtggtggcggaggcggag
gaggaggaggaggaggaggaagaggaggaaaaattgttggattgatgacg
attttcacacaaagtctcttgacttttcccgtttgcggaaagcctggggg
ttaacttcatactctaatttttaactgatacacaacacataaatccgtct
ttggaggactgcctttcgcctgttggaactccaattcttactcgtgtgaa
tcaattgtgactttcccctcgtgtcttcctatctcttatctggcattcca
acacacgctcccacagCTCCGATAGCCAACCCGGCGGAAGATGAATGGCA
AGAGATTGGAAACAAGAAGAAGAAGGAAATTGCTCCCGTAATCAGCTCGC
GCGGCGGTCGCGGGGGACGCATCGGACACATGGACACCAGACGAGGTGCT
CCCACTGGAGGCACCATGACCTCCCCTTCCTTCAACGACAACAGAGGCGC
CCCTCCTCAGAGTATGGGCCATCGCAGCACTCCTTCCTTTGGAGTCATAA
ACGGCAGCGGTGGACGAGGTCGAAGTGCTCCTCCGGGCCAGCGAGGTGGA
GGGGTGGCGGGGCGGAGCAGCGGCCGTGGAGGTGCCATCGTGATGGTTGG
AGGGCCTGGGCCAACATTCAGCAGTAGCAGCACCAGCAGGTCCATGTCTG
TGGTACCTTCACACGACGGGCCGGGTCTCAGGTCGAGCTCCAGTAATGGA
TCTGCCTGGACGCCGGGGGGGCGAAGCGCTGCCGCGGTGATCACGGAGGG
GCCTTCCCCTCCTGTCGAGCCGACCTTCCCCGCGCCCATCGTCGAACCTG
AGGTGGGACGCAGCAGTGACGGAGTGGTGGAAGAGGCTCAATGGGACCAA
CCCGTATCCAGCAGCAAGCCGGTAGCTCCCGCGTTGGCCGCCCCCCTGTC
TTCTTCCGTTGCCGCCTCCTCGTCATCTTCGTCCGCGGTCTCATCGGGTG
CTATTGCTCCAATACCTACCGATGCACGGATCTCGAAGCCCGTCGGCCCT
GGTCCCCAACCTACTGCTGCAACTGCCATGCCACCGCCCGCCGCCACGGG
CACgtgggctgctttgcttaagccaaaaccaaagcttccccctccaccgc
ctgcccctgtcccccccccccccccaaggcacaggcgccccaaattgtcc
cgaagtccgccgccgctgcgtcccccgccacaattaccactctcccgccg
gatcgacaacaatcacatcaaacacaacaacaaagACAGCAACAACAATC
AGAGCGGCAATCACAACAACAAAAACATCAACAACAACCACAACAACCAC
CACAACATCAATCACAACCACACCAACAACAACAACAACAACCACGACAG
CTACAGCAGCAACAACGGCAACAACAAAAACAACCGTCGCAGCAGCAGCC
GTCACGGCCTGTGGGGCCTCCTGATGGGGTCACCCTCACCGAGGCGGACA
TCCTGAAGATGAGCAACAAAAATAACGCCGATAAGGCCATCGGCCCCAAG
GTTCCTTCCACTGCCGCCTCGCCAGACACTCAGCAACAGCAGGAGCAACA
GCAGCGGCGGGCTCCGATTGAAGCTGACAGATGTGCTGCTGGTCTCAAGC
CGGAGATTAAGGAAGGAGGTGTGGATGCGACTGCCGACAGCTTGGGTCGT
GTTAAGCTGGGACAGTGGGAAGCGATCAGCGCCGTTGGTGATGGTGGAGG
TGGCAACATACTTTTCGGCGCCTTTGGGGTCGAGGAGTCAGGGGCTAATA
AGAAGACGGCCACAACATCTGCAGCTGATATCTGGGGAGGCAAAGCCGCA
AGCACCTCTCCTGTTGTGGCTGGTGCGGCAAAGTCTGTCACGTCTTCCCC
GCCAGACAGAACTCTATCGCCCAAGGAAGCGACTGTCGGTGCCACTGCTC
CTTCGGCTCCCGGTTCTGCTCCTCCTTCCTCGTCCTCCGCGCGACCCGCT
GCTCCTCCTGGGTTGGGGGGTCCCTCCCTGGTGAGTGCCACGTCAGTCAA
GTCCATCGAGAACGCGGCAGCTCAACGCGCGGCTGCTGTTAGTGCTGGTG
GCTCGGTATCGAAGCCCGCGGATGCAGTCAAGGCTCGCCCTTCCCCGCAC
CAGTCTCCTGTGAAGACAGTACCGGGCGTGCCGCAACACGCAATGCACCC
CCACGGAGGGCATGTGCAGCATGGGGCAGCGGAGCAGCTGATGGGGGCCT
ACAGTGGATATCCTCCGTACGGAAATGGAGCATATAACCTCGGAGGCGTT
GGAATACCCGGCGGGGTTGTCGGCGCTGTAGGAGGGGTAGACGCCGGGTC
AGAGAGTGCCCAGACGGGGTACCCTGGCCAGCAGCAACAGCAGCCACCAG
GGGTTGGAGTAAGTGCTTCCAGCGGGATGGGCGCATCGACTCTCAGTGGC
GCCCCTTCTAGCACAGGCGCTGGCTCTGCTGGTGCCGCGTCGTACCACCA
CCAACAACAGTCACAGCAGCAGTCGAGCGTAGGAGCACCCCCGCACTTGT
CACCCGCCATTCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAA
ACCCAACAGCAGCAGCCTTCCCCTTACGGGCAGCCGCCTCCTGGTATGCA
AGCGTATGGGTATGGCTACTATCAAACTCCATACTTTTACCCCAACCAAG
CATATGTTGCTCAGGCTGCGGCTGCTGGTCTGGGTGGGAATCAATTTGGG
TACGGTGGCCGAGGTGCCGTGGGAGGGTATGGAAACCCCGGAGCACGTGG
AGGGGGGCAGGGTGTTTATGGGATGGATCAATTTTCGGCCCCGCCTTCCC
AGGCGGCGTCGATGCATTATGGAGGAGGGGCGATGGACTACGGGGCAGGT
GTTGGAGCGGGTGCGCCATTCAACCAACAAGACCAATTTATCGGTGGAGG
AGTAGGACAAGGGAGTCACGGTGGGGCTGGAGTAGGGGTACCAGGGGGGG
GTGGACGTGGGGGGGAGGGCAAGACGAGTACCGGGCATACAGGGGGGCAT
TCGCATGCGCACGCTCACGGAGGGGTGGGCACGGGGCATGACCACCTGTC
CGGGGGGCCGCATGGCGTGGTGCCGCAGGGGAGCAAGGCTCAGGGAGGGA
CGTCGGGGGGTCCTCCTTTCGCGGGAGGTGGCGGATATGGTGCGAACCAT
TCGGTTGGGTCGCATTTGGGCGGTGGTGGAGGGTACCAAGGACGGAATGC
TGGACTGGAGGCGGGTGGGCAAGGTGGGTGGGCGGGAGGAGGGGGGCAGT
ACCAGGCTCCCGGGGGGGCGCATACCTGGATGTCGCACGGTCCGCCCCAG
GCGGCAAGTCATGCTATGGGCTTTAATCAACAGTCGGGGGGGATGTCCGG
TTCACACTCGCATGGGAATCCGAATATGATGCAGCAGCAGCAGCAGCAGC
AGCAGCAGTTTCAGGGGTATGCTCGTGGAGGGGCGGGAGGCATGAGCGGT
GGGGCCCAGAACTGGAGTTAA
back to top

protein sequence of NO05G02480.1

>NO05G02480.1-protein ID=NO05G02480.1-protein|Name=NO05G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1081bp
MSRSSEGVKKRGGRGGVTAERGGGGLPSQPSAVDLKQLMEFAPPGTTKEQ
VLEMHTKFSDREQLKEEICKLWDAPIANPAEDEWQEIGNKKKKEIAPVIS
SRGGRGGRIGHMDTRRGAPTGGTMTSPSFNDNRGAPPQSMGHRSTPSFGV
INGSGGRGRSAPPGQRGGGVAGRSSGRGGAIVMVGGPGPTFSSSSTSRSM
SVVPSHDGPGLRSSSSNGSAWTPGGRSAAAVITEGPSPPVEPTFPAPIVE
PEVGRSSDGVVEEAQWDQPVSSSKPVAPALAAPLSSSVAASSSSSSAVSS
GAIAPIPTDARISKPVGPGPQPTAATAMPPPAATGTQQQQSERQSQQQKH
QQQPQQPPQHQSQPHQQQQQQPRQLQQQQRQQQKQPSQQQPSRPVGPPDG
VTLTEADILKMSNKNNADKAIGPKVPSTAASPDTQQQQEQQQRRAPIEAD
RCAAGLKPEIKEGGVDATADSLGRVKLGQWEAISAVGDGGGGNILFGAFG
VEESGANKKTATTSAADIWGGKAASTSPVVAGAAKSVTSSPPDRTLSPKE
ATVGATAPSAPGSAPPSSSSARPAAPPGLGGPSLVSATSVKSIENAAAQR
AAAVSAGGSVSKPADAVKARPSPHQSPVKTVPGVPQHAMHPHGGHVQHGA
AEQLMGAYSGYPPYGNGAYNLGGVGIPGGVVGAVGGVDAGSESAQTGYPG
QQQQQPPGVGVSASSGMGASTLSGAPSSTGAGSAGAASYHHQQQSQQQSS
VGAPPHLSPAIQQQQQQQQQQQQQTQQQQPSPYGQPPPGMQAYGYGYYQT
PYFYPNQAYVAQAAAAGLGGNQFGYGGRGAVGGYGNPGARGGGQGVYGMD
QFSAPPSQAASMHYGGGAMDYGAGVGAGAPFNQQDQFIGGGVGQGSHGGA
GVGVPGGGGRGGEGKTSTGHTGGHSHAHAHGGVGTGHDHLSGGPHGVVPQ
GSKAQGGTSGGPPFAGGGGYGANHSVGSHLGGGGGYQGRNAGLEAGGQGG
WAGGGGQYQAPGGAHTWMSHGPPQAASHAMGFNQQSGGMSGSHSHGNPNM
MQQQQQQQQQFQGYARGGAGGMSGGAQNWS*
back to top
Synonyms
Publications