NO05G02460, NO05G02460 (gene) Nannochloropsis oceanica

Overview
NameNO05G02460
Unique NameNO05G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length760
Alignment locationchr5:653932..654691 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:653932..654691 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003581NSK003581Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02460.1NO05G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02460.1NO05G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02460 ID=NO05G02460|Name=NO05G02460|organism=Nannochloropsis oceanica|type=gene|length=760bp
ATGTCTGCCGTCAAGCTCCTGATCCGCGAGGCCATGATTGGGACGGGTCT
GGGTATTGTCGgtaagtcgtatgagtaggctgggcggaggggcagcggga
cgggagaaaggaaggaggcttgcctctcggaacggagagggttattgtcc
tattgcacatgcgcggagttctgatggcacggtgcatgcgtgtcgtgctg
cgtacacgcggagtgctgatggcacggtgcatgcgtgtcgtgctgggaaa
tgatagtggggagtaggcagagcggatgacgggcgtttgcttgattgtac
tcttggattcttagtttcattcacaccccgccaatcccgtgctcatctaa
cccacagGCGGCGTCTTCTGGAAGGCCGCCATCGCCGCACCCACCACACG
TACCTACAAGACTTACTACAAGgtatgtattcatttgtcaaacggtggga
gagggggggcactcttaaccgagcagtagtccaaaaaggaccagtggctg
caccacaccctgctcaccacaaggaatggatggatcgagccaagaagcat
tatgaatccatggcccaaaactgttcatttctgactcagctcccctcatc
cctcccctgatgaacgacatcaatattgaagGGCTTAGAAAAGCTGGACG
CGTCCGGTGCGTCAAGCTCGCCCGAGAACGCCGAGATTCTGGAAAAGGTG
GAGAAGGTTATTGCGACGCTGGAAGGCGGGGGAGAGGATGGAGGAGAGGA
GGAAGAGTAG
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protein sequence of NO05G02460.1

>NO05G02460.1-protein ID=NO05G02460.1-protein|Name=NO05G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MSAVKLLIREAMIGTGLGIVGGVFWKAAIAAPTTRTYKTYYKGLEKLDAS
GASSSPENAEILEKVEKVIATLEGGGEDGGEEEE*
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Synonyms
Publications