NO05G02300, NO05G02300 (gene) Nannochloropsis oceanica

Overview
NameNO05G02300
Unique NameNO05G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2626
Alignment locationchr5:610871..613496 +

Link to JBrowse

Properties
Property NameValue
DescriptionAp-4 complex subunit mu
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:610871..613496 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR036168AP2_Mu_C_sf
IPR028565MHD
IPR001392Clathrin_mu
Homology
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: EWM28257.1 (ap-4 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 798.5 bits (2061), Expect = 1.200e-227
Identity = 440/495 (88.89%), Postives = 463/495 (93.54%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESAKPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQKNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRI-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGTER 495
            MSGA+SSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFW+KGDAPPVFHLDGLNF+YVRKNGLLFGATTRFNVSPSTT+ELLNR AKVFKDYCGVLSEESIRKNFILVYELLDEMMD+GYAQATSTESLKNHVYNEPI+VESAK NLR+P IN KTTPSTAVHKPIT+SAQSGGKQKNEIFVDILERLNVLFSG+GYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGK    GG GYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTV+E+SPY++EM+LMIRADIPESNYGANVQVR+PMPRSA++VTTE+    G G   +  L TSGQTSEYNA+EKRV+WNIKKF GATEQ L I     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +ARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTG+ER
Sbjct:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGK----GGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGL-ASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGSER 490
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BLAST of NO05G02300 vs. NCBI_GenBank
Match: CBN75982.1 (Coatomer protein complex, gamma sub-unit [Ectocarpus siliculosus])

HSP 1 Score: 562.8 bits (1449), Expect = 1.100e-156
Identity = 281/485 (57.94%), Postives = 349/485 (71.96%), Query Frame = 0 
Query:    5 LSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESAKPNLRIPN-INPKTTPSTAVHKPITVSAQSGGKQKNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRV 489
            +S FFILSPRGDTIIS+D+RGD++    +  FRKVKFWE GD PP F +DG+N++YVRKNGLLF  +T++NVSPS  +ELLNR AKVFKDYCGVLSEE+IRKNFILVYELLDE +DYGY Q TSTE+L+NHV NEPILV+S K ++R+P+ +  KT PS+++ KP++ S Q  G Q+NEIFVDILERL+VLFS +G ++NS+IDGCIQMKSYLSGNPEL+LALN DLV+GK +   GS +G+VVLDDCNFHEC +LDEFES R LSF PPDGEF+LLNYR+  EFR PFR+FP++ +I PYR+E+ +++RAD+PE+  G NV            V++E+                 GQT+EY+ANE RV+W IKKF G++E  LR                                              RKE+GPVSM FEIPMYNVSNLQVRYL+I+E  KSYNP+RWVRYVTQ+SS+VCRV
Sbjct:    6 VSQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKVKFWESGDPPPCFTIDGVNYIYVRKNGLLFAVSTQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVK-SMRLPSALKTKTAPSSSIQKPVSGSGQKNGSQRNEIFVDILERLSVLFSQSGQVVNSSIDGCIQMKSYLSGNPELRLALNEDLVVGKAN--AGSSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFVLLNYRMNAEFRCPFRLFPSIGDIDPYRMEVVVIVRADMPETAAGTNVXXXXXXXXXXXXVSSEVES------------RVPGQTAEYSANEHRVVWTIKKFQGSSELTLRAKVTLPNVVNAAN---------------------------------RKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFRWVRYVTQSSSYVCRV 442
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: XP_009035107.1 (hypothetical protein AURANDRAFT_36844 [Aureococcus anophagefferens] >EGB10298.1 hypothetical protein AURANDRAFT_36844 [Aureococcus anophagefferens])

HSP 1 Score: 546.2 bits (1406), Expect = 1.000e-151
Identity = 276/492 (56.10%), Postives = 347/492 (70.53%), Query Frame = 0 
Query:    5 LSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWE-----KGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESAKPNLRIPNINPKTTPSTAVHKPIT--VSAQSGG--KQKNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCR 488
            LS FF+LSPRGDTIIS+DFRGDS   AAE  FRKVKFW       G APPVF +  + +++V+K+GL+F   +RFN SPS T+ELLNR  KVFKDYCGVLSEE+IRKNFIL+YELLDE++D+GY Q TSTE+LK  VYNEP+LV++ K   R+P+++ KTTPST+VHKPI    S+  GG    KNEIFVDILERL +LFS +G ++NSTIDGCIQMKSYLSGNPEL+LALN DLV+GK     G  YGAVVLDDCNFHECVRLD+FESSR LSF PP+GEF++LNYR TG+FRAPFR+ P +EE SP+ +++ +++RA+IPE+NYG NV + +P PR+           A  G P    +   G  ++Y+A  +++++ +KKF G  E   R                                             ARKE+GPVS++FEIPMYNVSNLQV+YLRI+EQ K+YNPYRWVRYVT++SS+VCR
Sbjct:    2 LSQFFVLSPRGDTIISKDFRGDSPQGAAEAFFRKVKFWSNDKGASGAAPPVFRVGDVTYVWVKKSGLMFACNSRFNCSPSMTLELLNRVVKVFKDYCGVLSEEAIRKNFILIYELLDEVIDFGYPQGTSTENLKAFVYNEPVLVDAQK--TRVPSLSAKTTPSTSVHKPIAGGKSSVMGGARSDKNEIFVDILERLTMLFSPSGAVVNSTIDGCIQMKSYLSGNPELRLALNEDLVVGK-----GGAYGAVVLDDCNFHECVRLDDFESSRLLSFLPPEGEFVVLNYRCTGDFRAPFRVLPQIEESSPFTIDVVVLVRAEIPETNYGGNVVITVPCPRTTAG--------ASCGPPSGGAI---GHGADYDAANRKLVFTVKKFQGGVEHAFR---------------------------------AKITLSAVCTAQARKEVGPVSLTFEIPMYNVSNLQVKYLRIAEQSKAYNPYRWVRYVTRSSSYVCR 442
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: CEM12696.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 527.3 bits (1357), Expect = 5.000e-146
Identity = 273/502 (54.38%), Postives = 340/502 (67.73%), Query Frame = 0 
Query:    5 LSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESAK-------PNLRIP--NINPKTTPSTAVHKPITVS---AQSGGKQKNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGK----VHTGGGSG--YGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRV 489
            +S F+ILSPRGDTII+RDFRGD     AEI FRKVKFW  GDAPP+F+LDG+N+++V++NGL F  TT FNVSPS T+E+L R  KV KD+CGVLSEESIRKNF+LVYELLDEM+D+GY Q TSTE LK  ++NE I+ E            + +P   INPKT PS AVH+P+ ++     +   +KNEIFVDILERL V+ + +GY++NS IDG IQMKSYLSG+PELKLALN D+V+G+      +GGG G  YG VVLDDCNFHE V L +F+  + LSF PPDGEF+++NYRIT +FRAPFRIFP VE+I+PY+LE  + IRADIPE NYG N+ +  PMP+    VT EL               T  Q++EY A++ +V+WNIKKF G  E  LR                                              +KEIGPVS++FEIPMYNVSNLQVRYLRISE+  +YNPYRWVRYVTQ+SS++CR+
Sbjct:    2 ISQFYILSPRGDTIINRDFRGDVARGTAEIFFRKVKFW-TGDAPPIFNLDGINYIFVKRNGLYFVVTTAFNVSPSYTVEMLQRMTKVVKDFCGVLSEESIRKNFVLVYELLDEMLDFGYPQLTSTEQLKGCIHNEAIMTEQPSHLGTMRAAGIALPQLQINPKTVPSNAVHRPVGLTQGDPYASKGRKNEIFVDILERLTVVLNASGYVLNSCIDGSIQMKSYLSGSPELKLALNEDIVVGRQPGQAGSGGGHGGWYGVVVLDDCNFHEQVDLRDFDDHKILSFVPPDGEFVVMNYRITSDFRAPFRIFPQVEQITPYKLECVIKIRADIPEQNYGGNMVISCPMPKHTAFVTNELFP------------QTPMQSAEYVASDTKVVWNIKKFQGGAEHTLR---------------------------------CKITLSQPCSETIKKEIGPVSLTFEIPMYNVSNLQVRYLRISERHAAYNPYRWVRYVTQSSSYICRL 457
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: XP_009524568.1 (hypothetical protein PHYSODRAFT_557715 [Phytophthora sojae] >EGZ21851.1 hypothetical protein PHYSODRAFT_557715 [Phytophthora sojae])

HSP 1 Score: 526.6 bits (1355), Expect = 8.600e-146
Identity = 276/496 (55.65%), Postives = 342/496 (68.95%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESA-----KPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQ-KNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 489
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFWEKGDAPP F++DG+N+L+V+KNGL F ATTR+NVSPS  +ELL R  +VFKDYCGVLSEE++RKNFIL YELLDE +DYG+AQ TSTE LK HV+NE ILV  A     K + +  N +     ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG     G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP VEE+SP ++EM L IRAD+PE+NYGANV +R P+P+S V+V+ ++            G + +GQ +EY  NE +V W IK+F G TE  LR                                            + R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:    1 MSSSISQFYILSTRGDTIIFNDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAVLSKPKASSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNT---GARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDI------------GKSAAGQLAEYRENENQVRWAIKRFTGGTELTLR----------------------------------AKITLGQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 447
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: POM61838.1 (AP-4 complex subunit mu-1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 526.2 bits (1354), Expect = 1.100e-145
Identity = 276/496 (55.65%), Postives = 342/496 (68.95%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESA-----KPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQ-KNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 489
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFWEKGDAPP F++DG+N+L+V+KNGL F ATTR+NVSPS  +ELL R  +VFKDYCGVLSEE++RKNFIL YELLDE +DYG+AQ TSTE LK HV+NE ILV  A     K + +  N +     ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG     G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP VEE+SP ++EM L IRAD+PE+NYGANV +R P+P+S V+V+ ++            G + +GQ +EY  NE +V W IK+F G TE  LR                                            + R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:    1 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAVLSKPKASSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNT---GARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDI------------GKSAAGQLAEYRENENQVRWAIKRFTGGTELTLR----------------------------------AKITLGQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 447
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: XP_008915410.1 (hypothetical protein PPTG_18768 [Phytophthora parasitica INRA-310] >ETI30728.1 hypothetical protein F443_22165 [Phytophthora parasitica P1569] >ETL77796.1 hypothetical protein L917_21283 [Phytophthora parasitica] >ETM99268.1 hypothetical protein PPTG_18768 [Phytophthora parasitica INRA-310] >ETO59484.1 hypothetical protein F444_22157 [Phytophthora parasitica P1976] >ETP28674.1 hypothetical protein F442_22039 [Phytophthora parasitica P10297])

HSP 1 Score: 525.8 bits (1353), Expect = 1.500e-145
Identity = 276/496 (55.65%), Postives = 341/496 (68.75%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESA-----KPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQ-KNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 489
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFWEKGDAPP F++DG+N+L+V+KNGL F ATTR+NVSPS  +ELL R  +VFKDYCGVLSEE++RKNFIL YELLDE +DYG+AQ TSTE LK HV+NE ILV  A     K   +  N +     ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG     G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP VEE+SP ++EM L IRAD+PE+NYGANV +R P+P+S V+V+ ++            G + +GQ +EY  NE +V W IK+F G TE  LR                                            + R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:   45 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAVLSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNT---GARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDI------------GKSAAGQLAEYRENENQVRWAIKRFTGGTELTLR----------------------------------AKITLGQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 491
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: ETL24575.1 (hypothetical protein L916_21430 [Phytophthora parasitica] >ETP00519.1 hypothetical protein F441_22068 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 525.8 bits (1353), Expect = 1.500e-145
Identity = 276/496 (55.65%), Postives = 341/496 (68.75%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESA-----KPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQ-KNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 489
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFWEKGDAPP F++DG+N+L+V+KNGL F ATTR+NVSPS  +ELL R  +VFKDYCGVLSEE++RKNFIL YELLDE +DYG+AQ TSTE LK HV+NE ILV  A     K   +  N +     ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG     G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP VEE+SP ++EM L IRAD+PE+NYGANV +R P+P+S V+V+ ++            G + +GQ +EY  NE +V W IK+F G TE  LR                                            + R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:   45 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAVLSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNT---GARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDI------------GKSAAGQLAEYRENENQVRWAIKRFTGGTELTLR----------------------------------AKITLGQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 491
[Close]
BLAST of NO05G02300 vs. NCBI_GenBank
Match: ETM31061.1 (hypothetical protein L914_21285 [Phytophthora parasitica])

HSP 1 Score: 525.8 bits (1353), Expect = 1.500e-145
Identity = 276/496 (55.65%), Postives = 341/496 (68.75%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESA-----KPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQ-KNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 489
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFWEKGDAPP F++DG+N+L+V+KNGL F ATTR+NVSPS  +ELL R  +VFKDYCGVLSEE++RKNFIL YELLDE +DYG+AQ TSTE LK HV+NE ILV  A     K   +  N +     ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG     G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP VEE+SP ++EM L IRAD+PE+NYGANV +R P+P+S V+V+ ++            G + +GQ +EY  NE +V W IK+F G TE  LR                                            + R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:   45 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAVLSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNT---GARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDI------------GKSAAGQLAEYRENENQVRWAIKRFTGGTELTLR----------------------------------AKITLGQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 491
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BLAST of NO05G02300 vs. NCBI_GenBank
Match: KUF65421.1 (AP-4 complex subunit mu-1 [Phytophthora nicotianae])

HSP 1 Score: 525.8 bits (1353), Expect = 1.500e-145
Identity = 276/496 (55.65%), Postives = 341/496 (68.75%), Query Frame = 0 
Query:    1 MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESA-----KPNLRIPNINPKTTPSTAVHKPITVSAQSGGKQ-KNEIFVDILERLNVLFSGTGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 489
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFWEKGDAPP F++DG+N+L+V+KNGL F ATTR+NVSPS  +ELL R  +VFKDYCGVLSEE++RKNFIL YELLDE +DYG+AQ TSTE LK HV+NE ILV  A     K   +  N +     ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG     G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP VEE+SP ++EM L IRAD+PE+NYGANV +R P+P+S V+V+ ++            G + +GQ +EY  NE +V W IK+F G TE  LR                                            + R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:    1 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAVLSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNT---GARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDI------------GKSAAGQLAEYRENENQVRWAIKRFTGGTELTLR----------------------------------AKITLGQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 447
The following BLAST results are available for this feature:
BLAST of NO05G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28257.11.200e-22788.89ap-4 complex subunit mu [Nannochloropsis gaditana][more]
CBN75982.11.100e-15657.94Coatomer protein complex, gamma sub-unit [Ectocarp... [more]
XP_009035107.11.000e-15156.10hypothetical protein AURANDRAFT_36844 [Aureococcus... [more]
CEM12696.15.000e-14654.38unnamed protein product [Vitrella brassicaformis C... [more]
XP_009524568.18.600e-14655.65hypothetical protein PHYSODRAFT_557715 [Phytophtho... [more]
POM61838.11.100e-14555.65AP-4 complex subunit mu-1 [Phytophthora palmivora ... [more]
XP_008915410.11.500e-14555.65hypothetical protein PPTG_18768 [Phytophthora para... [more]
ETL24575.11.500e-14555.65hypothetical protein L916_21430 [Phytophthora para... [more]
ETM31061.11.500e-14555.65hypothetical protein L914_21285 [Phytophthora para... [more]
KUF65421.11.500e-14555.65AP-4 complex subunit mu-1 [Phytophthora nicotianae... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003636NSK003636Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02300.1NO05G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02300.2NO05G02300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584263gene_3032Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CPC17gene2400Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02300.1NO05G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02300.2NO05G02300.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02300 ID=NO05G02300|Name=NO05G02300|organism=Nannochloropsis oceanica|type=gene|length=2626bp
TGGGAGGCAGGGAGCAGGGGTACTATTGTAGGAATGGAGCGAGGGATCGA
GGGGATTACATGAGCATTGTGACCCACTGAGGCAATCGAAGCCAAGAAGG
TCAAACTGTTAGTTGCTAGCCATTAATGCATCCACACCACTGGTTTCGTG
GCAAGACTGTGATAATACAATTGTGGGCATCGTGATATTGCTATAGCTTG
ACCGGCCGTCGCTGAAAGGAACTCAGAGCCGATGAGGCTATCTGTCTGAC
GTGCTGTTTCCTTGGCCTCTCACGCCTTTGCACCTATAGGACCACAGATA
CATAAGGGCTGCCCAGCTACTATGTCGGGAGCCTTGTCGTCCTTTTTTAT
CCTTTCCCCAAGGGGTGACACCATCATCAGTCGGGTAAGCGATTGTGACG
CGTACAGAGGAGGGAGGGGGCAGAGGCAGAGAGACCCTCAAGCAACAGCA
AGACGCGGACAGTCAATCAATGCTCTGTCTGTGGCACCGCATCTATTACC
AACAGGATTTTCGAGGGGACTCCTTGCCCAACGCAGCGGAGATTCTTTTT
CGCAAAGTCAAGTTCTGGGAGAAGGGAGACGCTCCACCCGTCTTCCACCT
CGACGGCCTCAATTTCCTGTATGTGCGCAAGAATGGATTGCTGTTTGGAG
CCACCACGCGTTTCAATGTGTCGCCTTCCACCACCATTGAGCTGCTGAAT
CGAACGGCCAAGGTTTTTAAGGACTATTGTGGGGTCTTGAGTGAGgtgcg
tttaagttgtgtcttccccacccttctttcaatttcgtcagcccttccag
ctttcagctcgaatccttacgtcctatcccacctttctgttcccgacgca
tatagGAATCTATCCGCAAGAATTTTATCCTGGTGTATGAGCTGCTGGAT
GAGATGATGGACTACGGTTACGCCCAAGCGACTTCTACGGAGAGCCTCAA
AAACCACGTGTACAACGAACCCATTTTGGTCGAATCCGCCAAGCCCAACT
TGCGCATTCCCAACATTAACCCCAAGACCACACCCTCCACTGCTGTGCAT
AAACCCATCACCGTTTCTGgtacgtaggggagggactcaatgatgatgaa
gaagcggcagcaatacatcgttcactcagcacttgctctccacccctacc
cttacagCGCAATCTGGCGGCAAGCAGAAGAACGAGATTTTCGTGGATAT
CTTGGAGCGCTTAAACGTACTCTTCTCGGGCACTGGATATATCATCAACT
CCACTATTGACGGCTGCATCCAGATGAAGAGCTACTTGTCGGGCAACCCG
GAGCTGAAGCTTGCCCTCAACAGTGACCTTGTCATCGGCAAAGgtgcgct
agtaggcgttagaaagagatgagggaggacaaggggctccgaattttgga
gagaaatttactcacaaattcaaatctgtttctcccaagTACATACAGGT
GGCGGCAGTGGGTACGGCGCAGTGGTCCTGGACGATTGCAATTTCCACGA
GTGCGTGCGACTCGACGAGTTTGAGAGCTCAAGGACGCTGTCCTTCTTCC
CGCCGGACGGGGAGTTTATCCTTCTCAACTATCGTATCACGGGCGAGTTC
CGGGCGCCTTTCCGTATCTTCCCTACAGTTGAAGAAATATCGCCTTACAG
Ggtgcgtgagaatatgaataaagggcgggtttttggcaggcaggccgccg
gcgaagagggcaaaagatggcacttgcttttacagctatgagttgataga
ccctcgcgatccatcctcccatctatctctgttttacccctattttagTT
GGAGATGTCGCTGATGATCCGGGCCGACATTCCCGAGTCTAACTACGGCG
CCAATGTGCAAGTGCGGATCCCCATGCCCCGTTCCGCCGTCTCAGTCACC
ACCGAGCTGGTGGGGACGGCGGGAACCGGACGACCGGTAGCGGCAGGGCT
GACGACCTCAGGCCAGgtaagaatggaaatcaaatttgcaatgagtgggt
ggatgcgtgtctgagtggatacatggtcgtggcgcatgtcttgcttacca
ggatcacgtcccttttctcttccgtcccgtgcagACGTCGGAGTACAACG
CTAACGAGAAGCGGGTTATATGGAACATCAAGAAGTTCCTTGGCGCCACG
GAGCAAATGCTGCGCATCAAGgtatgcatccatttttgaagggactcgca
cttccgtgcaatctctcactctctttttctactgtcacccacacttctac
agATTACCTTGGCGGGAGGCAGTGGCAGTGGCAGCAGCAGCAGTACTACC
AACAGCAGCAGTGTGTCGAGTAGTAATGCTTGCGGGGGAGGCGGCGGGAT
TGGGGCCACGCCGGGGGCGGGAGTGGGGAATGCACGCAAGGAGATAGGGC
CCGTGAGTATGAGCTTCGAGATTCCAATGTACAACGTCTCTAACCTCCAA
GTCCGCTACCTCCGCATCTCCGAGCAGCAGAAGTCCTACAACCCATATCG
ATGGGTCCGATATGTCACACAAGCGTCCAGCTTTGTGTGTCGGGTGGGTA
CGGGGACAGAAAGATGAGACACACAAATAGTTGTGAAGTAATAAAACAAA
AGTAAAGCATGTGTCAGATTAAGAGG
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protein sequence of NO05G02300.1

>NO05G02300.1-protein ID=NO05G02300.1-protein|Name=NO05G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MSGALSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWEKGDAPPV
FHLDGLNFLYVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLS
EESIRKNFILVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESAKPNL
RIPNINPKTTPSTAVHKPITVSAQSGGKQKNEIFVDILERLNVLFSGTGY
IINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDD
CNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEE
ISPYRLEMSLMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGR
PVAAGLTTSGQTSEYNANEKRVIWNIKKFLGATEQMLRIKITLAGGSGSG
SSSSTTNSSSVSSSNACGGGGGIGATPGAGVGNARKEIGPVSMSFEIPMY
NVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGTER*
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protein sequence of NO05G02300.2

>NO05G02300.2-protein ID=NO05G02300.2-protein|Name=NO05G02300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MLCLWHRIYYQQDFRGDSLPNAAEILFRKVKFWEKGDAPPVFHLDGLNFL
YVRKNGLLFGATTRFNVSPSTTIELLNRTAKVFKDYCGVLSEESIRKNFI
LVYELLDEMMDYGYAQATSTESLKNHVYNEPILVESAKPNLRIPNINPKT
TPSTAVHKPITVSAQSGGKQKNEIFVDILERLNVLFSGTGYIINSTIDGC
IQMKSYLSGNPELKLALNSDLVIGKVHTGGGSGYGAVVLDDCNFHECVRL
DEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVEEISPYRLEMS
LMIRADIPESNYGANVQVRIPMPRSAVSVTTELVGTAGTGRPVAAGLTTS
GQTSEYNANEKRVIWNIKKFLGATEQMLRIKITLAGGSGSGSSSSTTNSS
SVSSSNACGGGGGIGATPGAGVGNARKEIGPVSMSFEIPMYNVSNLQVRY
LRISEQQKSYNPYRWVRYVTQASSFVCRVGTGTER*
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Synonyms
Publications