NO05G02170, NO05G02170 (gene) Nannochloropsis oceanica

Overview
NameNO05G02170
Unique NameNO05G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3425
Alignment locationchr5:580029..583453 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:580029..583453 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO05G02170 vs. NCBI_GenBank
Match: EWM28179.1 (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana])

HSP 1 Score: 131.3 bits (329), Expect = 3.600e-27
Identity = 94/189 (49.74%), Postives = 115/189 (60.85%), Query Frame = 0 
Query:    1 MFEVTGLEIVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPATGSPPAGSLDPKLSKTHGDIISASVSSAIYSMPGEALPQRVRDISNISSRSSNK--KLGELAMAELLWQVNTM-----TEFRSMRMSVVS 183
            MF+VTGLE+V+L+G ASFLLGK+EVPQLARIVGRGTGK+VALLNTAR+QF  ATQ+T  S+LT EV+QNM EL+SIR EVRAAG +      RR       S     L P+   +     SA   S+     G +        S  S    +K  KLGELA+AELL Q + +     T  RS +  VVS
Sbjct:   64 MFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPS----RRMPTSEAVSKLTSPLQPEKEMSSFPKPSA---SSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQESVLGKEGGTLCRSQKKLVVS 245
[Close]
BLAST of NO05G02170 vs. NCBI_GenBank
Match: EWM28180.1 (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana])

HSP 1 Score: 117.9 bits (294), Expect = 4.100e-23
Identity = 89/192 (46.35%), Postives = 107/192 (55.73%), Query Frame = 0 
Query:    1 MFEVTGLEIVVLVGVASFLL-----------------------GKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPATGSPPAGSLDPKLSKTHGDIISASVSSAIYSMPGEALPQRVRDISNISSRSSNK--KLGELAMAELLWQV 168
            MF+VTGLE+V+L+G ASFLL                       GK+EVPQLARIVGRGTGK+VALLNTAR+QF  ATQ+T  S+LT EV+QNM EL+SIR EVRAAG +      RR       S     L P+   +     SA   S+     G +        S  S    +K  KLGELA+AELL QV
Sbjct:   14 MFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPS----RRMPTSEAVSKLTSPLQPEKEMSSFPKPSA---SSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV 198
[Close]
BLAST of NO05G02170 vs. NCBI_GenBank
Match: OWZ15880.1 (Sulfatase [Phytophthora megakarya])

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-7
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 0 
Query:    9 IVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPATGSPPAGSLDPKLSKTHGDIISASVSSAIYSMP 133
            + V V  ASFLLG+RE+P++ R VG  +G+ V  +  A+ +F  AT+D    +L  E Q+ + EL+ IR E+ + GS      +RRP  P TGS P+       S   G +I ++  + + ++P
Sbjct:    7 VFVTVTAASFLLGRRELPKIGRFVGLYSGRSVGAIIRAKKEFFDATKDNDLVKLQREFQRGIEELNEIRSELTSVGS------MRRPLQP-TGSAPS-------STASGTVIRSAAGTTVPNVP 116
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BLAST of NO05G02170 vs. NCBI_GenBank
Match: POM76203.1 (Sulfatase-like protein, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7
Identity = 41/121 (33.88%), Postives = 69/121 (57.02%), Query Frame = 0 
Query:    9 IVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPATGS-----PPAGSLDPKLSKTHGDIISASV 125
            + V +  ASFLLG+RE+P++ R VG  +G+ V  +  A+ +F  AT+D    +L  E Q+ + EL+ IR E+ + GS ++P +      P+TGS       A +L+  L++  G ++  SV
Sbjct:    7 VFVTMTAASFLLGRRELPKIGRFVGLYSGRSVGAIIRAKKEFFDATKDNDLVKLQREFQRGIEELNEIRSELTSVGSMRRPLQ-PTGAAPSTGSNGTVNHSAVALNTTLNELLGHVLQPSV 126
[Close]
BLAST of NO05G02170 vs. NCBI_GenBank
Match: XP_008900713.1 (hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >ETI53549.1 hypothetical protein F443_03533 [Phytophthora parasitica P1569] >ETK93425.1 hypothetical protein L915_03415 [Phytophthora parasitica] >ETL46834.1 hypothetical protein L916_03368 [Phytophthora parasitica] >ETN13633.1 hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >ETP23359.1 hypothetical protein F441_03527 [Phytophthora parasitica CJ01A1] >ETP51351.1 hypothetical protein F442_03516 [Phytophthora parasitica P10297] >KUF76407.1 Sulfatase protein [Phytophthora nicotianae])

HSP 1 Score: 63.5 bits (153), Expect = 9.100e-7
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:    9 IVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPAT 101
            + V V ++SFLLG+RE+P++ R VG  +G+ V  +  A+ +F  AT+D    +L  E Q+ + EL+ IR E+ + GS ++P +     +P T
Sbjct:    7 VFVTVTMSSFLLGRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPRT 98
[Close]
BLAST of NO05G02170 vs. NCBI_GenBank
Match: ETL99946.1 (hypothetical protein L917_03294 [Phytophthora parasitica])

HSP 1 Score: 63.5 bits (153), Expect = 9.100e-7
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:    9 IVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPAT 101
            + V V ++SFLLG+RE+P++ R VG  +G+ V  +  A+ +F  AT+D    +L  E Q+ + EL+ IR E+ + GS ++P +     +P T
Sbjct:    7 VFVTVTMSSFLLGRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPRT 98
[Close]
BLAST of NO05G02170 vs. NCBI_GenBank
Match: ETM53109.1 (hypothetical protein L914_03394 [Phytophthora parasitica] >ETO82234.1 hypothetical protein F444_03602 [Phytophthora parasitica P1976])

HSP 1 Score: 63.5 bits (153), Expect = 9.100e-7
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0 
Query:    9 IVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQFTKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPAT 101
            + V V ++SFLLG+RE+P++ R VG  +G+ V  +  A+ +F  AT+D    +L  E Q+ + EL+ IR E+ + GS ++P +     +P T
Sbjct:   21 VFVTVTMSSFLLGRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPRT 112
The following BLAST results are available for this feature:
BLAST of NO05G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM28179.13.600e-2749.74hypothetical protein Naga_100004g139 [Nannochlorop... [more]
EWM28180.14.100e-2346.35hypothetical protein Naga_100004g139 [Nannochlorop... [more]
OWZ15880.12.400e-734.68Sulfatase [Phytophthora megakarya][more]
POM76203.17.000e-733.88Sulfatase-like protein, partial [Phytophthora palm... [more]
XP_008900713.19.100e-735.87hypothetical protein PPTG_08388 [Phytophthora para... [more]
ETL99946.19.100e-735.87hypothetical protein L917_03294 [Phytophthora para... [more]
ETM53109.19.100e-735.87hypothetical protein L914_03394 [Phytophthora para... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003649NSK003649Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02170.3NO05G02170.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02170.2NO05G02170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02170.1NO05G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584199gene_3017Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g139gene2387Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02170.3NO05G02170.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02170.2NO05G02170.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02170.1NO05G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02170 ID=NO05G02170|Name=NO05G02170|organism=Nannochloropsis oceanica|type=gene|length=3425bp
CATGCATTCGTACGCTGATTACTTCATTTTCTGGCAATCCTGTTCCCCAA
GGGTCGGCTTAAAGCCCGTCAAATTGTCCCATGGTAATTTTCTTCTCTTA
TCCCTTACTCATTCCTCCTTCTGCGAGTAGAGTGCTTTTATTTACGTTTT
CACTGAAGTCCTTTGCACAACCCATGCCTCCTGGACTGTATTCATCATGG
CAAAAGCCCATCTGTACCAAAGCTGCCTCTAGAACGAGGGCCCAATGTGT
CCAATGCGTGCAACCCTGCGAAAAGACAGTATACGGCTCCCGCAGCGGTC
CATCAGCGCTCAATTCTAGGGTGCTGCCGTCGACAAATGTGCCTACGGCA
AAGACAACTTCGTCGCCGTAACCCGGCGAAATGCCCGCAGTCGGCCGAAT
GTAAGCACCGATGGGGCTCAACCGCTGCACCTGCTGGCAAAATTGGATAA
CCTGGTATCGACTGCCTACCTGTACGGCCTGAATAATATCGGTTCGTGAT
GTGCCTGGGGCTGGATTACAAGGCAGTCCGAACCGAGTGCCCATGACCTC
GGCCAATAGCATCGCGCCCTTGAGCGACTCACCCACCACAGCCGGGGCCA
TAAAGAGGCCCTGTAGAATCCAACGCGTCTTACCCAAAGTGGCTCCGCCC
TCCACGCCAGGTGCGCTCAATCGCTTGAAGGCTGCCTGTACGTAATGTTG
CTTGCCAATTACATACCCACCCGTCGGAGCGAGCGTGCCACCCGGATTCT
GTAACGATGTGAGCGCAGGTGCGGGTATGATTGAGAATGGTCAATCACGA
AAGCGTTCAGCTGCTTTTTGCGATTGTCCCTCGTAGGCGTTCAATTGCTT
GAAATTAACACGATGCTGTACCCTGTTAAGCCTTTTTTTTGCTTTAATCG
CATAAAAGGACCCTAGTCCCCGAACTACGCCTCTGCTTAAATTGGCCCAG
ACCACTCAGTACCCCTCCCACCCCCTGGGGCGCCCGACCCGACTATCCTT
TTCCAGATGATGCTTTCCCTTACCTTTATCAATGAGCCCGCTACGATATC
TGCACCCACATGTGTAGGCTCCAAGTCCTCCACAAACTCCCCGTAGCAGT
TGTCGACGAATACAACCAACTCCCGGCTTGGAAAGGCCGCGCGGATATGG
GCAATAACATGGCCAATCTCGGCCACGGGAATGGAAGGTCGCCACTGGTA
ACCGCAAGAGCGCTGAATGTGCAAAACCCGAATACATGGATCTGCAGTAA
TGCGGCGGTCGATCTCGGCGAGGTCAAAATACTGTCCTGGTGCCACGGAA
GAGAGGAGATCCACCTGATCATATGCCACACCCCATTCCTTTAAGCTCCC
TGTCAGCGGCCGCTGCCCCGGGGCTGGGCCACTACCTTCATCCTGGTGTC
CTACTCGAGTTCCAATTACCTCTTCAAGTGTATCGTATGGAGGGCCGCTC
AAACCCAACATTTTGTCCCCCGGCCGGAGGACGCCAAAGAGGGCGCAAGA
AATGGCGTGGGTTCCGCTAAAAATCTGTACGCGGACAAGCGCAGCCTCGG
CACCAAAGAGAGACGCGTAAACCTTTTCCAACGTGTCACGACCTACGTCG
CCATGTCCGTACCCGTCGATGCCGTTAAACATGTGCGTCCCCACCTGGTG
CTCCCGGAAGGCTGTAAGCACCCGCTTCAGGATGCGCTGTGTCCGGCGGT
CCACGTCCTCAAAAGCAGGTCGCAACCGTGCTTGCGCCTCGCCCACAATC
TTCTCGGCCATTATGTCTTCATCAGCACTAGTGGTGGCGGTATGCTGTAG
CGGCAAAAAGTCCCAACGCGATTGACTTCGCGATTGGCTCCTCGTTGTAG
GGGCTGGGCCCATGGCGTGGATGGTGCCGGCCGAGGGGATGCAAGAGGAA
GAAAGCAGGACATGATGCGACAAGGTAGTAGGCACAAACGCCATCACAAT
AGGATGGATCAAGACACAAACCAGCATTAGTGCGGCCCCCAAACAGAAGC
ATTCCCGTTGTAATGGCTGCAGGAGCAACATGGCCATGGAGTCAAGTTGC
TGGCCCAGCGCCACGATCCTGTGAGTGGTGTATTTGCAAGGATTCGTATG
GGAGGCCACCCACGTGTATGAAATGAGTGAATAAACGGACGATGCTCATG
ATAAGCGAAGCGCAGGGTTACTTATGAAGCGTGCAAGTATAATGCCTTGC
TTGTCATGCTGGGAAGTGGAAGGGCTGCTTCGCTTGTTCGACGGCGGCGA
GGAGGTTGACCTGACCTGCTGCCCACGCAAATTGACCACCACTTACACAC
ATATCTCTCCAATCCTCACCACGGGCAGCATATGTTTGAAGTGACGGGCC
TGGAGATAGTGGTGCTGGTGGGGGTGGCTTCGTTTTTGCTCGgtaagtgg
acgcacccacgacagcgcgcccctcgaccccgtcgtgaccccccccacac
cccattccccttatcctagGCAAGAGGGAAGTACCACAGCTCGCGCGCAT
CGTGGGACGAGGTACAGGCAAGATGGTAGCTTTGTTGAATACGGCACGGG
ATCAGTTTACCAAGGCCACGCAAGACACGCAGTTTTCCAGAgtacgtgtc
tgtctggggttagagggaaggaaacgtagcagcccataaaaaagcaggca
tctttaaataagccacttctaatcctcccatacagCTTACTCATGAGGTT
CAACAGAATATGTACGAGCTTGACTCAATCCGCTGCGAGGTACGCGCCGC
GGGTTCGCAGAAGCAGCCGTTTCGCCTCCGTCGCCCAGGCATGCCCGCAA
CGGGATCGCCTCCAGCAGGCAGTCTCGACCCGAAATTGTCCAAAACTCAC
GGTGACATCATTTCTGCGTCTGTCTCATCGGCAATATATTCTATGCCGGG
AGAAGCCTTGCCACAAAGAGTCCGTGACATCAGCAACATAAGCAGCAGGA
GCAGTAACAAAAAGCTAGGCGAGTTGGCCATGGCCGAGCTTTTGTGGCAG
GTAAATACGATGACAGAGTTTCGAAGCATGCGCATGTCTGTTGTGTCACG
CACTTATTACTTCTCCACTTGCCCTATTTTTCCTAACGGCAATCACCACC
TACGACTCTCTCATTCTCGTCTTCCACTCTCTCCCCCCCACCAAAGGAAT
CTGCGTTAGCCGGGGGAAAGGGAGGCAAAATGACACATCCGAATCAGCAA
CAGCTGCAGCAGCAAGCATCAGCACCTTTCCCTCCGACAGGCTCCACCAT
GATGGAGAACGTCATTTTAGAGACGCTGTTAAGGGATCACGTAGACCGTG
TTTCCTTCAGGAAACAAGGGGAAAAACGCACTGAGTAAGAGCTTGAGTAA
TAGATGTTTGGGAGAGTTGCCGACGAGTACATAATTTTGCTGTCAGAAAA
AATTAATGAGGCGACTACATAAAAG
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protein sequence of NO05G02170.3

>NO05G02170.3-protein ID=NO05G02170.3-protein|Name=NO05G02170.3|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MYELDSIRCEVRAAGSQKQPFRLRRPGMPATGSPPAGSLDPKLSKTHGDI
ISASVSSAIYSMPGEALPQRVRDISNISSRSSNKKLGELAMAELLWQESA
LAGGKGGKMTHPNQQQLQQQASAPFPPTGSTMMENVILETLLRDHVDRVS
FRKQGEKRTE*
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protein sequence of NO05G02170.2

>NO05G02170.2-protein ID=NO05G02170.2-protein|Name=NO05G02170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MFEVTGLEIVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQF
TKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPAT
GSPPAGSLDPKLSKTHGDIISASVSSAIYSMPGEALPQRVRDISNISSRS
SNKKLGELAMAELLWQVNTMTEFRSMRMSVVSRTYYFSTCPIFPNGNHHL
RLSHSRLPLSPPHQRNLR*
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protein sequence of NO05G02170.1

>NO05G02170.1-protein ID=NO05G02170.1-protein|Name=NO05G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MFEVTGLEIVVLVGVASFLLGKREVPQLARIVGRGTGKMVALLNTARDQF
TKATQDTQFSRLTHEVQQNMYELDSIRCEVRAAGSQKQPFRLRRPGMPAT
GSPPAGSLDPKLSKTHGDIISASVSSAIYSMPGEALPQRVRDISNISSRS
SNKKLGELAMAELLWQESALAGGKGGKMTHPNQQQLQQQASAPFPPTGST
MMENVILETLLRDHVDRVSFRKQGEKRTE*
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Synonyms
Publications