NO05G02130, NO05G02130 (gene) Nannochloropsis oceanica

Overview
NameNO05G02130
Unique NameNO05G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2340
Alignment locationchr5:572003..574342 +

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Properties
Property NameValue
DescriptionFerredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:572003..574342 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO05G02130 vs. NCBI_GenBank
Match: EWM28195.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 239.2 bits (609), Expect = 8.800e-60
Identity = 121/161 (75.16%), Postives = 137/161 (85.09%), Query Frame = 0
Query:    1 MTTMLRLSVLLVLLSMVASFLVPAPLPAMTSVPQQTRRGKMMMLGMFGKKSAGG--KTFTVTVQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            M  +LR ++ +V+++   +F VP     +T+  Q  R G M MLGMFGKKSAGG  KTFTVTVQQKFYK+AELEV+AGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCA+QII GAKNLNPKSPVEVKALGGK+GDDIRL+CCTRASGDV +KTKP
Sbjct:    1 MRGILRFAITMVMITTTVAFFVPV---LLTTHKQSRRVGVMTMLGMFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: CBN76658.1 (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 111.7 bits (278), Expect = 2.100e-21
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    9 VLLVLLSMVASFLVPAPLPAMTSVPQQTRRGKMMMLGMFGKKSAGGKTFTVTVQQKF-YKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALG-GKRGDDIRLSCCTRASGDVVIKTKP 160
            ++L  +  +++  V AP  ++ +V +Q+  G                      QQK  +K+ EL +      NLRK LM NKIDIYPLQGKIYNCGGGG CGTCAV + +GA+N +PK P E K L   KR    RLSCCT  SG V ++TKP
Sbjct:   10 IVLAAVLQISNGFVVAPSSSL-NVRRQSHSGMXXXXXXXXXXXXXXXXXXXXXQQKTGFKETELTL--AGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: XP_005535584.1 (unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM79298.1 unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 99.8 bits (247), Expect = 8.400e-18
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0
Query:   59 VTVQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRG-DDIRLSCCTRASGDVVIKTKP 160
            VTV +K   +  + ++A    NLRK L++NKID+Y L+GK+ NCGGGGQCGTC V I  G  N NP+   E +    K+  D  RLSCCT+  G + ++TKP
Sbjct:   90 VTVYEKGKSEPRV-LEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_006620154.1 (MULTISPECIES: iron ABC transporter substrate-binding protein [Arthrospira] >EDZ93670.1 ferredoxin [Arthrospira maxima CS-328] >BAI90159.1 probable 2Fe-2S ferredoxin [Arthrospira platensis NIES-39] >CCE20850.1 Ferredoxin (2Fe-2S) [Arthrospira sp. PCC 8005] >EKD10921.1 ferredoxin [Arthrospira platensis C1] >CDM93456.1 Ferredoxin (2Fe-2S) [Arthrospira sp. PCC 8005] >KDR55691.1 iron ABC transporter substrate-binding protein [Arthrospira platensis str. Paraca] >AMW28279.1 iron ABC transporter substrate-binding protein [Arthrospira platensis YZ])

HSP 1 Score: 99.0 bits (245), Expect = 1.400e-17
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 0
Query:   72 EVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            EV A    NLR + M+N+ID+Y L+GK+ NCGG GQCGTC V+++ G +NL+PK+PVE + L  K+ D  RL+C T  +G V ++TKP
Sbjct:   12 EVIAADGANLRLKAMENQIDLYTLKGKLLNCGGYGQCGTCIVEVVEGMENLSPKTPVEERML-KKKPDTYRLACQTTVNGPVSVRTKP 98          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_096381240.1 (iron ABC transporter substrate-binding protein [Stanieria sp. NIES-3757] >BAU63453.1 ferredoxin [Stanieria sp. NIES-3757])

HSP 1 Score: 97.8 bits (242), Expect = 3.200e-17
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 0
Query:   64 KFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            KF K+ + E+ A    NLR++ ++N IDIY L+GK+ NCGG GQCGTC V+I+ G ++L+PK+P E + L  ++ D  RL+C T  +G++ +KTKP
Sbjct:    5 KFVKE-DKEIIAANGANLREKALQNGIDIYTLRGKLVNCGGYGQCGTCIVEIVEGMEHLSPKTPFEARKL-KRKPDSYRLACQTLVNGEISVKTKP 98          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_015145091.1 (ferredoxin [Pleurocapsa minor] >AFY78792.1 ferredoxin [Pleurocapsa sp. PCC 7327])

HSP 1 Score: 97.4 bits (241), Expect = 4.200e-17
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 0
Query:   64 KFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            +F K+ E EV A    NLR++ ++N+IDIY L+GK+ NCGG GQCGTC V+I+ G +NL+PK+  E++ L  K+ +  RL+C T  +G V +KTKP
Sbjct:    5 RFVKE-EKEVIAADGANLREKALQNRIDIYTLKGKLTNCGGYGQCGTCIVEIVEGMENLSPKTDFELRKL-KKKPESYRLACQTLVNGPVKVKTKP 98          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_024545606.1 (MULTISPECIES: iron ABC transporter substrate-binding protein [Synechococcus] >BAW96656.1 putative ferredoxin [Synechococcus sp. NIES-970])

HSP 1 Score: 97.4 bits (241), Expect = 4.200e-17
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   66 YKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            Y  A  +V A    NLR++ ++N +D+Y   GK+ NCGG GQCGTC V+II G +NL+PK+P E + L  ++    RL+C T A GDVV+KTKP
Sbjct:    6 YVPANKDVIAADGANLREKALQNGVDLYTFGGKLMNCGGVGQCGTCIVEIIEGMENLSPKTPFEERRL-KRKPPSYRLACQTLAHGDVVVKTKP 98          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_039727861.1 (iron ABC transporter substrate-binding protein [Lyngbya confervoides] >KIF15661.1 iron ABC transporter substrate-binding protein [Aphanocapsa montana BDHKU210001] >KIF40583.1 iron ABC transporter substrate-binding protein [Lyngbya confervoides BDU141951])

HSP 1 Score: 97.4 bits (241), Expect = 4.200e-17
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 0
Query:   66 YKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            + + + EV A    NLR + M+N IDIY L GK+ NCGG GQCGTC V+I  G++NL+P++ VE + L  KR ++ RL+C T  +GD+ +KTKP
Sbjct:    6 FLNEDKEVIAADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKL-RKRPENCRLACQTLVNGDITVKTKP 98          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_036477598.1 (iron ABC transporter substrate-binding protein [Myxosarcina sp. GI1])

HSP 1 Score: 97.1 bits (240), Expect = 5.400e-17
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   58 TVT-VQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            T+T V+ K  K+   EV A    NLR++ ++N +DIY L+GK+ NCGG GQC TC V I+ G +NL+P++  E K L GK+ D  RLSC T   G + ++TKP
Sbjct:    3 TITFVKDKNGKEVITEVVAANGSNLREKALQNNVDIYKLKGKLTNCGGVGQCSTCIVDIVEGMENLSPRTDFEQKRL-GKKPDSYRLSCQTVVKGPITVRTKP 104          
BLAST of NO05G02130 vs. NCBI_GenBank
Match: WP_071104556.1 (iron ABC transporter substrate-binding protein [Moorea producens] >AOY81207.1 iron ABC transporter substrate-binding protein [Moorea producens JHB])

HSP 1 Score: 97.1 bits (240), Expect = 5.400e-17
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = 0
Query:   64 KFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            KF K+ + EV A    NLR+++++N+ID+Y  +GK+ NCGG GQCGTC V+I++G +NL+P++ VE + L  K+ D+ RL+C    +G V +KTKP
Sbjct:    5 KFVKE-DQEVIAANGANLREKMLQNRIDLYTFRGKLVNCGGYGQCGTCIVEIVAGIENLSPRTEVENRKL-KKKPDNYRLACQVLVNGPVTVKTKP 98          
The following BLAST results are available for this feature:
BLAST of NO05G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28195.18.800e-6075.16ferredoxin [Nannochloropsis gaditana][more]
CBN76658.12.100e-2143.79ferredoxin [Ectocarpus siliculosus][more]
XP_005535584.18.400e-1847.06unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merol... [more]
WP_006620154.11.400e-1751.14MULTISPECIES: iron ABC transporter substrate-bindi... [more]
WP_096381240.13.200e-1746.88iron ABC transporter substrate-binding protein [St... [more]
WP_015145091.14.200e-1748.96ferredoxin [Pleurocapsa minor] >AFY78792.1 ferredo... [more]
WP_024545606.14.200e-1748.94MULTISPECIES: iron ABC transporter substrate-bindi... [more]
WP_039727861.14.200e-1748.94iron ABC transporter substrate-binding protein [Ly... [more]
WP_036477598.15.400e-1746.60iron ABC transporter substrate-binding protein [My... [more]
WP_071104556.15.400e-1746.88iron ABC transporter substrate-binding protein [Mo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003652NSK003652Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02130.1NO05G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584168gene_3014Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g135gene2384Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02130.1NO05G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02130 ID=NO05G02130|Name=NO05G02130|organism=Nannochloropsis oceanica|type=gene|length=2340bp
TCATGCGCGGCCAGCATCTGAGCTTCCTGCAAGGGACTGACCCTCCCGAG
GGGGTATAATACTATCACCCTCATGTTCTCTTTGCCCTTAACTGCCGCTG
CTGCTGAAGGCCCCGTGTCTCCTGATGTGCCAACTAGAAAGGTCATTTTT
TGGTGTTGCTTGGAGAGGTAGAAGTTGAGGACATGAGCTAAGACTTGCAT
GCCTAAGTCTTTGAATGCCAAGGAGGGCCCGTGGAACAATTCGGCGATAT
AGAGGGAGGGAGCAGAGGAGGGGGAGGAGGAGCAGGAGGAGGAGGAGGAA
GAGGAGGAAGAGGAGGAGGAGGAGGACGACGACGAGGACGAAGGCCACGG
CAAGGCCTTGAATGTCACCACCTCGGGCGTAGCAAAGGAGGCAAAGCTGG
CGTCCACAATCTCTTCCAATGGCACTTCCTCTTCGGTCTTCCCGTCGTCC
TCGTCCCCGTCGTCCGTCACAAACAAAGCCAAGAGCCTGGTGACTAATTG
GGGATATGAGAGGCCTCTCCATTCTTCCAGCATCGCAGGCGTCACCTGCG
GGATGCGCTCTGGTAGGAGCATGCCTCCATCCGGAGCCCATCCTGCTAGC
ACGGCTTCACGAAATGTGAGGCGCGACGAAGAGGAGGAAGATTCTCCTCG
GGTGCTAATGTACCGCATAGGGCGTTGCGTCGTGACTATCAATACTCCTG
TGGTATGGCTGAAGGGGGGAGAGGGAGGGAGGAGGAGAGTAAGGTGTATT
GAGCAAAGAGCCAGGCAGGTGATAAATAGCCGGGTAAGTACAAAGGGGTG
GGTACATGTGCCTGCGTTGGCCCCTCAGAACGCGAGACGAACGAACGAAC
GAGAGGAGCGGAGAGACTTCGCCTCTTCTCGTGTCAAGTCACGACAAACA
CCACACACGCAAGTTTGCAACAAGGCGATGTGGATCTGTGAGTGGGTGTA
CGCACTACGTTGACGTGAGGTGGCAGTCCTCGAGGCATAAAAATGACAAG
GAACGAGATCTACTTCGCCCCAAAACCGGCATGGACAGAGTATCAATTTT
CGTTGCCGCCAAGTAATGCTCTACTCTGTCTCATCTTGTGACCTTGGCTC
GCTTTGAATTCTTCCCCTCTCGTTCTTGATTTCGATTGTCCTATCTAATT
CCTCTCTTATTACACTCACCACGAACACACACCACACAGGCAGATCTTTC
CTCTCCCTGCACATCATGACTACCATGCTTCGCCTGTCCGTTCTCCTGGT
CCTGCTTTCCATGGTAGCCTCCTTCCTAGTCCCCGCTCCCTTGCCGGCCA
TGACCTCTGTGCCACAGCAAACTCGGCGAGGGAAGATGATGATGCTGGGC
ATGTTTGGGAAGAAGTCGGCCGGAGGAAAGACATTTACGGTGACGGTGCA
ACAGAAGTTTTACAAGGACGCGGAGCTGGAAGTAGATGCGGGCGCACCAG
TGAACCTGCGCAAGGAGCTCATGAAGAATAAGATTGACATCTACCCGTTG
CAAGGCAAGATCTACAACTGCGGCGGAGGGGGCCAGTGCGGTACCTGTGC
CGTGCAGATTATCAGTGGTGCCAAGAATCTTAAgtaagtcttgagtagtg
aagatggtaggggcgggtctggaatgctcttcccgtgcaagaaggttttt
gttcaatcatttactccccgatctctttcctttgtttgagcatattcaat
atattcaattcttctcgcatttgccttacgactcatttcgtttctttcta
aatgttaaatttcatgcaaaaactagCCCCAAGTCGCCCGTGGAGGTCAA
GGCGCTAGGCGGGAAGAGGGGAGACGACATTCGATTGTCATGCTGCACAC
GGGCCTCGGGGGACGTGGTGATTAAGACGAAGCCTTGACTGATTGACTGA
CTAGCTTTTCAATGACTAAGAAGATATGACCGGGAAGGCACCAACGATGA
TGACTTTGCAGGAGGTTGGGGTCCACAAGAGCAATACCCAAAACGATGTG
AGGAATGATGATAAAGAAGGAATCACGTACTGCCGAAGGAGACGGAGGAG
GGGGGAAAGAAGAGATCGGAAAGGAGAGAAAAGAAGTAGAGATCATATAC
TGATCTGTATTGTGTCACTTCCTTTTTGTAGAATGGGCGGAAAGGCTTAT
GTGTGTGAGAGTGAGTGTGCGTTGAGCGTGTGTGCGTGTGCCCCGGTGCC
CCGACTGATCTTTTGTTCAAGTGAAAAGCTGGTCTTCAAAGCACGCGTGT
ATCTCTTTTTCCTAGACCAGTGCGAAGCAAGCTATCAAAAAAGTGGAAAA
GAATAATGACGAAAAAGAAAGGGGGGGAAACTAGGATGAA
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protein sequence of NO05G02130.1

>NO05G02130.1-protein ID=NO05G02130.1-protein|Name=NO05G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MTTMLRLSVLLVLLSMVASFLVPAPLPAMTSVPQQTRRGKMMMLGMFGKK
SAGGKTFTVTVQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIY
NCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRAS
GDVVIKTKP*
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Synonyms
Publications