NO05G02050, NO05G02050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G02050 vs. NCBI_GenBank
Match: EWM28243.1 (cytochrome b6-f complex iron-sulfur subunit [Nannochloropsis gaditana]) HSP 1 Score: 402.1 bits (1032), Expect = 1.100e-108 Identity = 190/219 (86.76%), Postives = 201/219 (91.78%), Query Frame = 0 Query: 1 MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWWK 220 MKTA VLAT FCG GFL P +P+ VAR+NSGR+ TKMAE GEEPFVPDMDRRKLMN+ILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGL AKDALGDDV V GWL+THQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAE+KF+CPCHGSQYDKTGKVVRGPAPLSLALAHV E+D KV+LTPWTETDFRT+ APWWK Sbjct: 20 MKTAFVLATFFCGVHGFLVPGIPSAS-VARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
BLAST of NO05G02050 vs. NCBI_GenBank
Match: Q5CC93.1 (RecName: Full=Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle; AltName: Full=Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 1; AltName: Full=Rieske iron-sulfur protein 1; Short=ISP 1; Short=RISP 1; Flags: Precursor >CAH04960.1 Rieske iron-sulphur protein [Cyanophora paradoxa]) HSP 1 Score: 280.0 bits (715), Expect = 6.200e-72 Identity = 134/195 (68.72%), Postives = 152/195 (77.95%), Query Frame = 0 Query: 27 VVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFV-PRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVV-LTPWTETDFRTNVAPWWK 220 V A + + TT + VPDM +RKLMN +LLG++ VAG P+++F V P+ GGGAG G AKDALG+DVKVS WL TH+ GDRSL QGLKGDATYLIVKED T+ENYGLNAVCTHLGCVVPWN +ENKFMCPCHGSQYD+TGKVVRGPAPLSLALAHV+ +D VV PWTETDFRTN APWWK Sbjct: 45 VFAAAKPAKETTFSVSCSAASDDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWWK 239
BLAST of NO05G02050 vs. NCBI_GenBank
Match: PRW50973.1 (cytochrome b6 f complex iron-sulfur chloroplast precursor [Chlorella sorokiniana]) HSP 1 Score: 272.7 bits (696), Expect = 9.900e-70 Identity = 129/190 (67.89%), Postives = 143/190 (75.26%), Query Frame = 0 Query: 29 ARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWW 219 A+ + R + + A VPDM +R+LMN +LLG+VG GLA PY FFVP + GG GG VAKDALG+DVK + WLATH AGDRSL QGLKGDATYLIV D TIE YGLNAVCTHLGCVVPWNKAENKFMCPCHGSQY+ GK +RGPAPLSLALAH + NDD V T WTETDFRT APWW Sbjct: 333 AQRPAARRASVVVRAAAASAEVPDMGKRQLMNLLLLGAVGAPAVGLAGPYALFFVPPSTGGGAGGTVAKDALGNDVKGTTWLATHAAGDRSLTQGLKGDATYLIVTNDGTIEKYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYNSEGKKIRGPAPLSLALAHCDVNDDIVTFTDWTETDFRTGEAPWW 522
BLAST of NO05G02050 vs. NCBI_GenBank
Match: XP_010277891.1 (PREDICTED: cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic [Nelumbo nucifera]) HSP 1 Score: 270.0 bits (689), Expect = 6.400e-69 Identity = 129/215 (60.00%), Postives = 158/215 (73.49%), Query Frame = 0 Query: 11 FCGAQ-GFLAPS-----LPT-TDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWW 219 FC ++ G +PS PT T ++ + R+T + V ++ VPDM +R+LMN +LLG++ L AG+ VPY +FF P GGAGGG VAKDALG+DVK S WL TH GDR+LVQGLKGD TYL+V+ DKT+ +G+NAVCTHLGCVVPWN AENKF+CPCHGSQY+ G+VVRGPAPLSLALAH + +D VVL PW ETDFRT APWW Sbjct: 14 FCSSKSGMFSPSQALMVKPTKTHLLGKEKMVRITCQATSVPADDR-VPDMGKRQLMNLLLLGAISLPTAGMLVPYASFFAPPGSGGAGGGTVAKDALGNDVKASEWLKTHGPGDRTLVQGLKGDPTYLVVENDKTLATFGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADVDDGNVVLVPWVETDFRTGEAPWW 227
BLAST of NO05G02050 vs. NCBI_GenBank
Match: XP_022726406.1 (cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Durio zibethinus]) HSP 1 Score: 269.6 bits (688), Expect = 8.400e-69 Identity = 126/212 (59.43%), Postives = 158/212 (74.53%), Query Frame = 0 Query: 8 ATLFCGAQGFLAPSLPT-TDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWW 219 + +FC +Q FL PT T++V + RLT + + + VPDM +R+LMN +LLG+V L + VPY AFFVP GGGAG G +AKDA+G+DV + WL TH GDR+L QGLKGD TYL+V++D+T+ YG+NAVCTHLGCVVPWN+AENKF+CPCHGSQY++ G+VVRGPAPLSLALAH + +D KVV PW ETDFRT APWW Sbjct: 39 SVMFCPSQAFLLK--PTRTEMVKKDKGMRLTCQATSIPADR--VPDMGKRELMNLLLLGAVSLPTGFMLVPYAAFFVPPGGGGAGSGTIAKDAIGNDVIAAEWLKTHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPWNQAENKFICPCHGSQYNEQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWW 246
BLAST of NO05G02050 vs. NCBI_GenBank
Match: Q5CC92.1 (RecName: Full=Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle; AltName: Full=Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 2; AltName: Full=Rieske iron-sulfur protein 2; Short=ISP 2; Short=RISP 2; Flags: Precursor >CAH04961.1 Rieske iron-sulphur protein [Cyanophora paradoxa]) HSP 1 Score: 268.1 bits (684), Expect = 2.400e-68 Identity = 127/195 (65.13%), Postives = 148/195 (75.90%), Query Frame = 0 Query: 27 VVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFV-PRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVV-LTPWTETDFRTNVAPWWK 220 V A + + + TT + VPDM +RKLMN +LLG++ G P+++F V P++GGGAG G AKDA G+D+KV WL T + GDRSL QGLKGDATYLIVKED T+E YGLNAVCTHLGCVVPWN++E KFMCPCHGSQYD+TGKVVRGPAPLSLALAHVN +D VV PWTETDFRTN APWWK Sbjct: 47 VFAAAKAAKATTFSISCSAASDEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWWK 241
BLAST of NO05G02050 vs. NCBI_GenBank
Match: XP_009418752.1 (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Musa acuminata subsp. malaccensis]) HSP 1 Score: 267.7 bits (683), Expect = 3.200e-68 Identity = 127/224 (56.70%), Postives = 155/224 (69.20%), Query Frame = 0 Query: 1 MKTAVVLATLFCGAQGFLAPSLPTTDVVAR------SNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWW 219 + TA + L G G +PS AR SG++T + + + VPDM +R+L+N +LLG++ L AG+ +PY FFVP GGAGGG VAKDALG+DV + GWL TH GDR+L QGLKGD TYL+V+ DKT+ YG+NAVCTHLGCVVPWN AE KF+CPCHGSQY+ G+VVRGPAPLSLALAHV+ +D KVV PW ETDFRT PWW Sbjct: 6 LSTAAAPSQLSSGKNGIFSPSRALLSRPARGLGLGKERSGKITCQATSIPADR--VPDMGKRQLLNLLLLGTLSLPTAGMLIPYTYFFVPPGSGGAGGGTVAKDALGNDVTLDGWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNAAEKKFICPCHGSQYNNQGRVVRGPAPLSLALAHVDVDDGKVVFVPWVETDFRTGEDPWW 227
BLAST of NO05G02050 vs. NCBI_GenBank
Match: XP_010095858.1 (cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Morus notabilis] >EXB62326.1 Cytochrome b6-f complex iron-sulfur subunit [Morus notabilis]) HSP 1 Score: 266.9 bits (681), Expect = 5.400e-68 Identity = 124/214 (57.94%), Postives = 156/214 (72.90%), Query Frame = 0 Query: 8 ATLFCGAQGFLA-PSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAH--VNENDDKVVLTPWTETDFRTNVAPWW 219 +++FC + FL P+ + V + R+ + V ++ VPDM +R+L+N +LLG++ L AG+ +PY +FF P GGAGGG VAKDA+G+DV S WL TH GDR+L QGLKGD TYL+V+ DKT+ YG+NAVCTHLGCVVPWNKAENKF+CPCHGSQY++ G+VVRGPAPLSLALAH VN +D KVV PW ETDFRT PWW Sbjct: 19 SSMFCPSHAFLVKPAAKSQSAVVKGKGMRIACQATSVPADDR-VPDMGKRQLLNLLLLGAISLPSAGMLIPYASFFAPPGSGGAGGGTVAKDAVGNDVIASEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFICPCHGSQYNERGRVVRGPAPLSLALAHADVNVDDGKVVFVPWVETDFRTGEEPWW 231
BLAST of NO05G02050 vs. NCBI_GenBank
Match: CBJ29582.1 (Cytochrome b6-f complex iron-sulfur subunit [Ectocarpus siliculosus]) HSP 1 Score: 266.2 bits (679), Expect = 9.300e-68 Identity = 133/224 (59.38%), Postives = 155/224 (69.20%), Query Frame = 0 Query: 1 MKTAVVLATL--FCGAQGFLAP---SLPTTDVVARSNSGRLTTK-MAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWW 219 M AV LA L GA F++P S + V R + R T+K M + EE FVPDMDRR MN IL GS+G+NV GLAVPYIAF AKDA+G++V V WLATH G R L +G+KGDATYL+V EDK +++YG+ AVCTHLGCVVPWNKAENKFMCPCHGSQYD+TGKV+RGPAPLSLAL+HV E D KV+ W ETDFRT PWW Sbjct: 1 MIKAVALAALAALFGADAFVSPVATSFSGSAVAQRPTASRATSKAMKMSSNEEVFVPDMDRRTAMNLILAGSIGVNVLGLAVPYIAFXXXXXXXXXXXXXTAKDAIGNEVTVESWLATHGVGSRELAEGIKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGKVIRGPAPLSLALSHVEEVDGKVIFKEWKETDFRTGDKPWW 224
BLAST of NO05G02050 vs. NCBI_GenBank
Match: GAQ88485.1 (Cytochrome b6-f complex iron-sulfur subunit [Klebsormidium nitens]) HSP 1 Score: 266.2 bits (679), Expect = 9.300e-68 Identity = 127/199 (63.82%), Postives = 148/199 (74.37%), Query Frame = 0 Query: 20 PSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWW 219 P + VV + MA VA ++ VPDM++R MN +L+G++ L AGL PY FFVP + G AGGG+VAKDALG+DV VS W TH A D+SLVQGLKGD TYL VKED +I +G+NAVCTHLGCVVPWN+AENKFMCPCHGSQY+ GKVVRGPAPLSLALAH + DDKVVL+PWTETDFRT PWW Sbjct: 40 PFVAQGSVVRQGKRAAKVVSMAAVASDK--VPDMNKRVTMNLLLVGALSLPAAGLLGPYAYFFVPPSSGSAGGGVVAKDALGNDVAVSKWTKTHLANDKSLVQGLKGDPTYLTVKEDLSITTFGINAVCTHLGCVVPWNQAENKFMCPCHGSQYNSEGKVVRGPAPLSLALAHADTVDDKVVLSPWTETDFRTGEKPWW 236 The following BLAST results are available for this feature:
BLAST of NO05G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G02050 ID=NO05G02050|Name=NO05G02050|organism=Nannochloropsis oceanica|type=gene|length=769bpback to top protein sequence of NO05G02050.1 >NO05G02050.1-protein ID=NO05G02050.1-protein|Name=NO05G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bpback to top Synonyms
Publications
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