NO05G02020, NO05G02020 (gene) Nannochloropsis oceanica

Overview
NameNO05G02020
Unique NameNO05G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3223
Alignment locationchr5:545693..548915 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:545693..548915 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO05G02020 vs. NCBI_GenBank
Match: EWM28295.1 (hypothetical protein Naga_100004g127 [Nannochloropsis gaditana] >EWM28296.1 hypothetical protein Naga_100004g127 [Nannochloropsis gaditana])

HSP 1 Score: 343.2 bits (879), Expect = 2.600e-90
Identity = 244/502 (48.61%), Postives = 279/502 (55.58%), Query Frame = 0 
Query:    1 MARARGISDTGVWSLTTRDEYVSYLQSKKSLSKASIHSYCWRLETLFRALVTGKNMHGDLNRDQIRRLVEHNFDEAERLVAQDDRRSHWRLLKEFLGLSDVPFVMAGGGGNDVMNLHQRLASSGGGAVESSLDGNGRVIIGNGDGGLVEHRDDKPPSF-----------PVXXXXXXXXXXXXXXXXXXXXXXXXXXTCGSYCTFVHNLLRALADARKPLPLFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGLNRAELIELLEEQYEEAQRIVRQSKKSRYLRSFREFLGMGNHEDNVPRNMNHWTDRIGGGYKKWVGSGRAGSSHARTRGYVGAARSMLRAVKRHGWVIEAVGGSMVTRGEVLRAIEKRKAELQQVCDKADEERLQAFCRYL 492
            MARAR + D GVWS+TTRDEYVS+LQSKK+LSKASIHSYCWRLETLFRAL+TGK   G+L+R QIR+L+EHN +EAERLVAQDDRRSHW LLKEFL L   P + AG  G D     ++L  S  G  E  +    R  +   +    +H+   P SF                                       TCGSYCTFVHNLLRALADARKP+P                                 XXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                             REGLNR ELIELL+EQ EEAQRIVRQSKK+RYLRSFREFLGM NH+D++ +N   WTDR+GG YKKW+G+G A   HARTRGYVGAARS+LR +KR GWV EA GG  +T  ++  AIE  K ELQQ+CDKAD+E LQAFCRYL
Sbjct:    1 MARARSLYDMGVWSITTRDEYVSFLQSKKNLSKASIHSYCWRLETLFRALMTGKQKQGNLDRGQIRQLIEHNLEEAERLVAQDDRRSHWCLLKEFLELPSAP-LCAGERGRD-----EQLLDSVRGVGEDEV----RFPVHTLENEANKHKSISPNSFRKRNGMMAASKGKHENKVWDMELKKDYRTWLRERGVKERTCGSYCTFVHNLLRALADARKPVP-----YRSHRQQTTTIPITLLPTFPQSRLSHEEXXXXXXXXXXXXXXXXXXXXXXXXXXXISYQQPRAGQRECLHEGLQSGNAILLLASHEDSAIGDAYCYRGDRSGQEASEDNLRVAEDNEVVAMEGGEAGIVAPRREGLNRGELIELLDEQQEEAQRIVRQSKKNRYLRSFREFLGMSNHDDHIVKNSRQWTDRVGGAYKKWIGAGGANCPHARTRGYVGAARSILRVIKRKGWVQEAFGGPPLTSADICLAIEAHKEELQQICDKADDECLQAFCRYL 487
The following BLAST results are available for this feature:
BLAST of NO05G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28295.12.600e-9048.61hypothetical protein Naga_100004g127 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003660NSK003660Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02020.1NO05G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584098gene_2996Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g127gene2378Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02020.1NO05G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02020 ID=NO05G02020|Name=NO05G02020|organism=Nannochloropsis oceanica|type=gene|length=3223bp
CATTCACAGGCGGCAATCAATAAGGATTTCGGTCAAAGCCGCTTTTAAAA
GGGTAGCACGATCACGATTACTGCACGATTCATTGAAGAGTCCTGCTTCA
CTTTGTGTTGTGGCCGTGCTTGAGCTACCTGTGGCAAGGGGAGGCCAGTC
GTTAATTTGCTTACACGGGCACACGCATCTCACCGAGTGTGGTGCTTCGT
TGATCTGTGGTCTTATCTGACGGCGGAGCAGCAGCAGCACTAGCAATATC
ATCATCCGAGGCCTCGAGCATCCTATTTGCATTCAATAACTCCACCATAA
TGGCCAGGGCTCGAGGCATAAGCGACACGGGCGTCTGGTCCTTGACCACA
CGTGATGAGTATGTCAGCTACCTGCAATCGAAAAAGAGCCTGTCCAAGGC
CTCTATTCATAGCTATTGCTGGCGCCTCGAGACACTCTTTCGGGCTCTGG
TGACGGGCAAAAACATGCACGGCGACTTGAACCGGGACCAAATTCGCCGG
TTGGTCGAGCATAACTTTGACGAGGCTGAGCGTTTGGTGGCGCAAGACGA
CCGTCGGAGCCATTGGCGCCTTTTGAAGGAATTTTTGGGGTTGTCCGACG
TTCCTTTTGTTATGGCAGGGGGAGGAGGCAACGACGTGATGAACCTGCAC
CAGCGATTGGCCAGCAGCGGTGGAGGCGCTGTCGAGAGCAGTCTTGACGG
AAATGGAAGAGTGATAATCGGGAATGGAGATGGGGGACTCGTCGAGCATA
GGGATGATAAGCCACCATCTTTTCCTGTGGGTGTGGGTGGTGGTGGAGGG
GCTAGGAGGAGTGGGGAAGGCGGGGGTGGAGGGGGGGGGGGAAGAACGAA
AACAAGgtatgggacatggagctaaagaaagattaccgagcctggctccg
agagcgtggagtcaaggatagGACTTGTGGCTCGTATTGCACTTTTGTGC
ATAACCTTTTACGAGCCCTGGCAGACGCACGCAAGCCGTTGCCCCTTTTT
CAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAGCCACCACCACCGC
CGCTTCATCAGCACCAACACCACCAGCTTCCGCAGCAACATAAGCAGCAG
GAGCAAGACCACCACATGCCTCCACCCGTTGCGGAGGAGTCCATTGTCCC
TAACAATGAGTGCGAGTTGCAGCAGCAGAACGAGGCATCGAAGGGAAATG
GTGTTCTATTGCATCATGGCGAGAGTCCTCAGGACATAGGAGGAAGAGGA
AACGGTGCTGCGTCAGCCGCGTCAGGAGGTCCCCTCATAGAAGAGCAGCA
GCAGCCTGTGGTGCTGATGATGGAGGGAGGAGAAGCAGGGATCATCCCCC
CCCGCCGGGAAGGGTTAAACAGAGCCGAGCTTATCGAGCTGTTGGAAGAA
CAATACGAAGAAGCACAGCGGATCGTAAGGCAATCCAAGAAAAGTCGGTA
CTTGCGTTCTTTCCGCGAATTCTTAGGGATGGGTAACCATGAAGACAACG
TCCCCCGAAATATGAACCATTGGACAGACCGCATAGGGGGAGGGTACAAA
AAATGGGTTGGGTCGGGGAGGGCCGGTAGCTCCCATGCACGCACCCGGGG
ATATGTTGGCGCAGCGAGAAGTATGTTGAGGGCAGTGAAGAGGCATGGAT
GGGTGATAGAGGCAGTAGGGGGGAGTATGGTGACGAGGGGGGAGGTTTTG
AGAGCGATCGAAAAGCGTAAGGCGGAGCTGCAACAGGTGTGTGATAAGGC
GGATGAGGAGCGGTTACAGGCTTTTTGTCGGTATTTGAGTGGTGGAGGAG
GAGGGGGAGAAGGGAAGGGAGGGGGGAAAGAGGAGGAAGAGGAGTTTCAT
TTCTCGTCGGGGGCGTCGTCGTTTGGTATGGATGCGGAGGAAGAGGAGGA
AACGGAGAAGGTGCTAGAGGAGATCAAAGAAGGAGGAGCAGGAAAAGCAA
CAGGAAGAGGGGTTGGTGAAATTGCCTCGAAAGTGAGTGCCACTACGATT
TCCTCCGCCGCTGCTGGGCAAATGGTGCTGCCACAGCTGCTGCTGCTGCA
GCATGAGCGAAGGAATGGGTCGGATGGAGGGTTGGTTGGAAGCGTCGACG
TTGCGACCGAAGGAGGGGAGCGAGTGGTGATGTCATCACAGAAGGACGCG
AGTGGAGGGGGGCAATATGTTCAGAGGGCAGTTGTCCATCACCAACAACA
ACAATCACCACTACAGCAACCACAGCAGCACCAACACCAATATCAACAAG
CACCATCATCACAACAACAGCAGCAACAAGAAGAGCCGCACCAGCAGCAG
CAGCAGCAGCCATCCACGTCAAGCCCCAAACCAGCCGTGGGGGAAGGACA
AAAGAGAAAGCGACTGATTGTAGAGAGGGAGAGGGGACTGCAGAAACGAA
TCATGATGCTCGAGCAAGAGGTGGATCGCACGACACGTGAGCGGGACAAG
GCCCAAAGACGCGCGCAGAGACTGGAGGAGGAACTAAAGCACCTGCGAGA
TCGCTTACCGCCATTGCCGCCCGTCATGATCAGCTCCCCATCCACAGGTG
ACTCTCATCTGGCCATGTCGATAAATGTTGTTTCGATGCAGCAGCAGCAG
CAAATGTTTGCTGTCGGTACAGCGGAGGGAGATAGCGGTGGAAAGGCGGA
GGTGCAGCAGAACAGAGTCGCTGTTGAAGGGGAGGGGAGGGAACAAGGAA
GTGAGAGAGATGAAGGACAAGATGCAAGAGTAGAGATTATTTGCCCGGGC
CACAAGAAGCAGAAGCAGCAGCAGGAAAAGCATCACCACGTGGCGCAGAG
GGAGTACCACGACCATCACCACCACCAGGAGCAACAAGAGCAGCTGCATC
AAGGCATTCATATATTGGAGGGGCACAAGCATCAGCTGCACCGGCAGCAC
CAGTCGCACGCAGAGGAGCCGGAGCAGCACCACCTCCTTCACCATAGGCA
TATGGACAACACTCGATTTGACATGTCCCTCCGCCGGCATCCAAACGGGG
AGGAAGAATTAGAGGAGAGGGAGGAGGATGGGGAAGAGGAAGGGGTGCGT
GCTATTCACGAGGATGCGATAGTTGTGATGGGCGGCGGAAGGGCTGATTT
GGATGGACATGTTGAGACGGAGGATGGCAATATGACGCAGCAAGGTTGGG
CGGATCCGCAGGATGATATTTGA
back to top

protein sequence of NO05G02020.1

>NO05G02020.1-protein ID=NO05G02020.1-protein|Name=NO05G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=953bp
MARARGISDTGVWSLTTRDEYVSYLQSKKSLSKASIHSYCWRLETLFRAL
VTGKNMHGDLNRDQIRRLVEHNFDEAERLVAQDDRRSHWRLLKEFLGLSD
VPFVMAGGGGNDVMNLHQRLASSGGGAVESSLDGNGRVIIGNGDGGLVEH
RDDKPPSFPVGVGGGGGARRSGEGGGGGGGGRTKTRTCGSYCTFVHNLLR
ALADARKPLPLFQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPPPPPLHQH
QHHQLPQQHKQQEQDHHMPPPVAEESIVPNNECELQQQNEASKGNGVLLH
HGESPQDIGGRGNGAASAASGGPLIEEQQQPVVLMMEGGEAGIIPPRREG
LNRAELIELLEEQYEEAQRIVRQSKKSRYLRSFREFLGMGNHEDNVPRNM
NHWTDRIGGGYKKWVGSGRAGSSHARTRGYVGAARSMLRAVKRHGWVIEA
VGGSMVTRGEVLRAIEKRKAELQQVCDKADEERLQAFCRYLSGGGGGGEG
KGGGKEEEEEFHFSSGASSFGMDAEEEEETEKVLEEIKEGGAGKATGRGV
GEIASKVSATTISSAAAGQMVLPQLLLLQHERRNGSDGGLVGSVDVATEG
GERVVMSSQKDASGGGQYVQRAVVHHQQQQSPLQQPQQHQHQYQQAPSSQ
QQQQQEEPHQQQQQQPSTSSPKPAVGEGQKRKRLIVERERGLQKRIMMLE
QEVDRTTRERDKAQRRAQRLEEELKHLRDRLPPLPPVMISSPSTGDSHLA
MSINVVSMQQQQQMFAVGTAEGDSGGKAEVQQNRVAVEGEGREQGSERDE
GQDARVEIICPGHKKQKQQQEKHHHVAQREYHDHHHHQEQQEQLHQGIHI
LEGHKHQLHRQHQSHAEEPEQHHLLHHRHMDNTRFDMSLRRHPNGEEELE
EREEDGEEEGVRAIHEDAIVVMGGGRADLDGHVETEDGNMTQQGWADPQD
DI*
back to top
Synonyms
Publications