NO05G01740, NO05G01740 (gene) Nannochloropsis oceanica

Overview
NameNO05G01740
Unique NameNO05G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2182
Alignment locationchr5:474473..476654 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:474473..476654 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003694NSK003694Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01740.1NO05G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583996gene_2962Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01740.1NO05G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01740 ID=NO05G01740|Name=NO05G01740|organism=Nannochloropsis oceanica|type=gene|length=2182bp
ATGAACTCCCTAATCACACAGCGCAGCGACATTGGACCCTGCCACACCAG
TGACCAGTCCCACAGGCCTACCGAAGCGCTTGAGAGGGTGGCACATGGAG
CCGGGGTCGTGATCTCACCCAAGGGGGCACAAGTCTCGCCGCCCCAAGCC
CCCATGAAAGCACGCCCGCCCTTCCAAATGACACTTGCGGGGGGCAGCGG
CAACCATACATTTACTGCCAATAGGAGCGATTATAGGAGAAGCACCAATC
CCGATATGGGTGGCGATGGAGTGGCTTCAACGCGCCTGCGCTTAGAGTAC
GCTGAGGCTAGTAACAGCAGCACGGACCCCATCTGGAACTCCTCCTACTC
TCTCGACTCCTTGCTCACGGCTGCCTCCTTTTCGAGAACCGCCACTTCAT
CCAAGCTCATGCACAACCATTCTTCTATCTCGCTTGAGCCTACCACGACA
GATTTGTCCATGGCGTTGACGGCGAGAGAGAGGGAGGAAGACGCAGACAT
GGCAGCAGCGGCGGCCACTCTGCTCTCCGTCCGACCCTCCACCGAGCCCC
TCCTACCTTACACGCCGCCTGCTGAATCAGAGAAACGGCTGAATAAATAC
CACGAGCACCAGCAGATCCTGCCTCAGCAGCTCCAGCAGCAGCCTCCGGA
GCAACGACAGCAACAGCAGCCTCCGGCCAAGGCGCATCGCCGCGGACCCC
CGCGTAAGTCTGCGGTACAAGCTCAGGCGTTGGTGGCAGCTGCCGTTAAG
AATGGAGCTATTATCGACGACGAGGACGACAACGAAGAGGGGTACAATGA
AACGGTGCATGGAGGGTGGGCCAGGGGGAGGAAGGGAGGGAGAGAAAACA
TGGCTATGGATATGGAGATAATAGAGGAGTGGGAAGAGGAGGACGACGAT
GATTCGATACTTGAGGCTTCATATACCGCGAGCAAGAAAAAGAAGAAGAG
TATGAAGGGCTCCATTGGgtacgtattggtgattccacgggcgggagagg
cagaatgaatgattgtggggggtggccatgttgttgctttttagttgtcg
ttgattgagttgctaataattagttgtcgtccggatgatggacagacgat
tgagtaaccgtcctctctccctttcttcctcctcctttcttcgcccccac
cacagCCGCCGTGTCCCTGACGAAAAACTGGTTGTTATGGCGGACTTCTG
GCGTTCCAAGGGCCTCTCCTCTAAATCCCAACTTGACAAGCTCGTCGCCC
TAGCTCACAGCCGCAAGCTCTTTTCTGACCCCCCCCGAATCGACCTGAAA
CTCCAGCAACTCCGCTCCATGCTCCCCGGCGCCGACGTTGTGAAAATCGT
CAGCAACGCCCCCAACATCCTCGTATACGACCTCATACTCTCCATCCCCC
CCAAACTCCACGCCCTCCAACGCCTCCTTCCCGGCTGCGACGTTGTCAAG
GTCATCGTCTCCTCCCCCCATCTCCTCACCTTCAACATCGAATCAAACAT
CGCCCCCAAGGTCCAGCAGCTCCGCCGCCTTCTCCCCGGGGCAAACATTG
TCAAAATCATCTCCTCCGCGCCCAACCTTCTTTCCTACGACATCGACGGC
TCTCTTTCTCACAAGGTGCACGCACTCTTTCATCTACTTCCGGGCGCAGA
TGTGGTCAAGCTCATCTCCTACGCCCCTACCTTACTCTATCACGACACGG
AGGCAAGCATTGCGCCGAAGCTACGAGCGCTTGCTCTGCTGCTGCCGGGG
TGCGACGTTGTTAAGATGGTGTGTGCAGCTCCTCCCCTCCTGTGCTCCGA
TATTGAGGGGAGTATCGCGCGGAAATTGCTTTGGATGTGCGAGATGGTGA
ATGGGACAGAAAAGGAGTTGCACGAAAAGATCGAGAGTAACCCTCGACTG
CTAACGTGCGGGTATGGCGTCGTCTTCGGGCGGTTGGAGTTCATCGCCCA
GGACAAGGAGGAGAATGTGGCAGTGAAGGAGCTGAGGTCTGTGCTGTTGG
CGCCGGTGTCAAAGTTTGTGAAAATGTGGCCGGGATATCCGATCTATCTG
GCGCAGCAGTTGGTGAATGCTGAGTGGGCGCTGGCGAGGGGGCGGGATGT
GCAAGAGGTGCTCAGGAGAGGGGCGAAGCACCTGGAGAAAGAGTACGGAA
ACTGTTTGAGGAGCGTCGTCAACAAAGATTAG
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protein sequence of NO05G01740.1

>NO05G01740.1-protein ID=NO05G01740.1-protein|Name=NO05G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MNSLITQRSDIGPCHTSDQSHRPTEALERVAHGAGVVISPKGAQVSPPQA
PMKARPPFQMTLAGGSGNHTFTANRSDYRRSTNPDMGGDGVASTRLRLEY
AEASNSSTDPIWNSSYSLDSLLTAASFSRTATSSKLMHNHSSISLEPTTT
DLSMALTAREREEDADMAAAAATLLSVRPSTEPLLPYTPPAESEKRLNKY
HEHQQILPQQLQQQPPEQRQQQQPPAKAHRRGPPRKSAVQAQALVAAAVK
NGAIIDDEDDNEEGYNETVHGGWARGRKGGRENMAMDMEIIEEWEEEDDD
DSILEASYTASKKKKKSMKGSIGRRVPDEKLVVMADFWRSKGLSSKSQLD
KLVALAHSRKLFSDPPRIDLKLQQLRSMLPGADVVKIVSNAPNILVYDLI
LSIPPKLHALQRLLPGCDVVKVIVSSPHLLTFNIESNIAPKVQQLRRLLP
GANIVKIISSAPNLLSYDIDGSLSHKVHALFHLLPGADVVKLISYAPTLL
YHDTEASIAPKLRALALLLPGCDVVKMVCAAPPLLCSDIEGSIARKLLWM
CEMVNGTEKELHEKIESNPRLLTCGYGVVFGRLEFIAQDKEENVAVKELR
SVLLAPVSKFVKMWPGYPIYLAQQLVNAEWALARGRDVQEVLRRGAKHLE
KEYGNCLRSVVNKD*
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Synonyms
Publications