NO05G01640, NO05G01640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G01640 vs. NCBI_GenBank
Match: EWM28223.1 (splicing factor 3b subunit 5 [Nannochloropsis gaditana]) HSP 1 Score: 192.6 bits (488), Expect = 5.400e-46 Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDEDE 90 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQ+LEKMLQPCGPPPAAKDDED+ Sbjct: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89
BLAST of NO05G01640 vs. NCBI_GenBank
Match: CBJ32239.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 151.4 bits (381), Expect = 1.400e-33 Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDED 89 MAADRFN+NRSW+H+QNKYVGTGH D TK EW TNQHRD+ A+H+GH D L Y AVA+N+AVGRVRYQ+LEKMLQPCGPPP AKDD+D Sbjct: 35 MAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPP-AKDDDD 121
BLAST of NO05G01640 vs. NCBI_GenBank
Match: XP_024585640.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG49271.1 Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 147.5 bits (371), Expect = 2.000e-32 Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDE 88 MAADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP +D++ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDEQ 87
BLAST of NO05G01640 vs. NCBI_GenBank
Match: XP_009530587.1 (hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae] >EGZ13158.1 hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae]) HSP 1 Score: 147.1 bits (370), Expect = 2.600e-32 Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 MAADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP +D+ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDE 86
BLAST of NO05G01640 vs. NCBI_GenBank
Match: OQS07034.1 (hypothetical protein THRCLA_20235 [Thraustotheca clavata]) HSP 1 Score: 144.1 bits (362), Expect = 2.200e-31 Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 MAADRFNINR WEHLQ KYVGTGH D +K EW NQHRDT A+H+GH D LAY AVA+N+++GRVRY MLEKM+QPCGPPP ++D Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86
BLAST of NO05G01640 vs. NCBI_GenBank
Match: OQR80818.1 (hypothetical protein ACHHYP_17189 [Achlya hypogyna]) HSP 1 Score: 143.3 bits (360), Expect = 3.800e-31 Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 MAADRFN+NR WEHLQ KYVGTGH D +K EW NQHRDT A+H+GH+D LAY AVA+N+++GRVRY MLEKMLQPCGPPP +++ Sbjct: 1 MAADRFNVNRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLAYFAVAENESLGRVRYTMLEKMLQPCGPPPIKEEE 86
BLAST of NO05G01640 vs. NCBI_GenBank
Match: POM70473.1 (Splicing factor 3B subunit 5, partial [Phytophthora palmivora var. palmivora]) HSP 1 Score: 143.3 bits (360), Expect = 3.800e-31 Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0 Query: 2 AADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 AADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP +++ Sbjct: 17 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 101
BLAST of NO05G01640 vs. NCBI_GenBank
Match: ETO71221.1 (hypothetical protein F444_12391 [Phytophthora parasitica P1976] >ETP12341.1 hypothetical protein F441_12279 [Phytophthora parasitica CJ01A1] >KUF79058.1 hypothetical protein AM587_10013184 [Phytophthora nicotianae]) HSP 1 Score: 142.5 bits (358), Expect = 6.400e-31 Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 MAADRFNINR WEHLQ KYVGTGH D TK EW NQ RDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP +++ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQQRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 86
BLAST of NO05G01640 vs. NCBI_GenBank
Match: OWZ20177.1 (hypothetical protein PHMEG_0005437 [Phytophthora megakarya]) HSP 1 Score: 141.4 bits (355), Expect = 1.400e-30 Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 MAADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D +AY AVA+N+++GRVR MLEKMLQPCGPPP +++ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRSNMLEKMLQPCGPPPQKEEE 86
BLAST of NO05G01640 vs. NCBI_GenBank
Match: XP_008618163.1 (splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >XP_012208861.1 splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65] >EQC28515.1 splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >KDO20404.1 splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 140.6 bits (353), Expect = 2.400e-30 Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87 MAADR+NINR WEHLQ KYVGTGH D +K EW NQHRDT A+H+GH+D L Y AVA+N+++GRVRY MLEKMLQPCGPPP +++ Sbjct: 1 MAADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLTYFAVAENESLGRVRYTMLEKMLQPCGPPPFKEEE 86 The following BLAST results are available for this feature:
BLAST of NO05G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G01640 ID=NO05G01640|Name=NO05G01640|organism=Nannochloropsis oceanica|type=gene|length=651bpback to top protein sequence of NO05G01640.1 >NO05G01640.1-protein ID=NO05G01640.1-protein|Name=NO05G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bpback to top Synonyms
Publications
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