NO05G01640, NO05G01640 (gene) Nannochloropsis oceanica

Overview
NameNO05G01640
Unique NameNO05G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length651
Alignment locationchr5:453598..454248 -

Link to JBrowse

Properties
Property NameValue
DescriptionSplicing factor 3b subunit 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:453598..454248 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009846SF3b5/RDS3-10
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
BLAST of NO05G01640 vs. NCBI_GenBank
Match: EWM28223.1 (splicing factor 3b subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 5.400e-46
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDEDE 90
            MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQ+LEKMLQPCGPPPAAKDDED+
Sbjct:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: CBJ32239.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.4 bits (381), Expect = 1.400e-33
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDED 89
            MAADRFN+NRSW+H+QNKYVGTGH D TK EW TNQHRD+ A+H+GH D L Y AVA+N+AVGRVRYQ+LEKMLQPCGPPP AKDD+D
Sbjct:   35 MAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPP-AKDDDD 121          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: XP_024585640.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG49271.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 147.5 bits (371), Expect = 2.000e-32
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDE 88
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP  +D++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDEQ 87          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: XP_009530587.1 (hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae] >EGZ13158.1 hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae])

HSP 1 Score: 147.1 bits (370), Expect = 2.600e-32
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP  +D+
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDE 86          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: OQS07034.1 (hypothetical protein THRCLA_20235 [Thraustotheca clavata])

HSP 1 Score: 144.1 bits (362), Expect = 2.200e-31
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            MAADRFNINR WEHLQ KYVGTGH D +K EW  NQHRDT A+H+GH D LAY AVA+N+++GRVRY MLEKM+QPCGPPP  ++D
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: OQR80818.1 (hypothetical protein ACHHYP_17189 [Achlya hypogyna])

HSP 1 Score: 143.3 bits (360), Expect = 3.800e-31
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            MAADRFN+NR WEHLQ KYVGTGH D +K EW  NQHRDT A+H+GH+D LAY AVA+N+++GRVRY MLEKMLQPCGPPP  +++
Sbjct:    1 MAADRFNVNRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLAYFAVAENESLGRVRYTMLEKMLQPCGPPPIKEEE 86          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: POM70473.1 (Splicing factor 3B subunit 5, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 143.3 bits (360), Expect = 3.800e-31
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    2 AADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            AADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP  +++
Sbjct:   17 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 101          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: ETO71221.1 (hypothetical protein F444_12391 [Phytophthora parasitica P1976] >ETP12341.1 hypothetical protein F441_12279 [Phytophthora parasitica CJ01A1] >KUF79058.1 hypothetical protein AM587_10013184 [Phytophthora nicotianae])

HSP 1 Score: 142.5 bits (358), Expect = 6.400e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQ RDT A+HLGH D LAY AVA+N+++GRVRY MLEKMLQPCGPPP  +++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQQRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 86          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: OWZ20177.1 (hypothetical protein PHMEG_0005437 [Phytophthora megakarya])

HSP 1 Score: 141.4 bits (355), Expect = 1.400e-30
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D +AY AVA+N+++GRVR  MLEKMLQPCGPPP  +++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRSNMLEKMLQPCGPPPQKEEE 86          
BLAST of NO05G01640 vs. NCBI_GenBank
Match: XP_008618163.1 (splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >XP_012208861.1 splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65] >EQC28515.1 splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >KDO20404.1 splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 140.6 bits (353), Expect = 2.400e-30
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDD 87
            MAADR+NINR WEHLQ KYVGTGH D +K EW  NQHRDT A+H+GH+D L Y AVA+N+++GRVRY MLEKMLQPCGPPP  +++
Sbjct:    1 MAADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLTYFAVAENESLGRVRYTMLEKMLQPCGPPPFKEEE 86          
The following BLAST results are available for this feature:
BLAST of NO05G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28223.15.400e-4697.75splicing factor 3b subunit 5 [Nannochloropsis gadi... [more]
CBJ32239.11.400e-3377.27conserved unknown protein [Ectocarpus siliculosus][more]
XP_024585640.12.000e-3274.71Uncharacterized conserved protein [Plasmopara hals... [more]
XP_009530587.12.600e-3275.58hypothetical protein PHYSODRAFT_259151 [Phytophtho... [more]
OQS07034.12.200e-3172.09hypothetical protein THRCLA_20235 [Thraustotheca c... [more]
OQR80818.13.800e-3170.93hypothetical protein ACHHYP_17189 [Achlya hypogyna... [more]
POM70473.13.800e-3174.12Splicing factor 3B subunit 5, partial [Phytophthor... [more]
ETO71221.16.400e-3173.26hypothetical protein F444_12391 [Phytophthora para... [more]
OWZ20177.11.400e-3072.09hypothetical protein PHMEG_0005437 [Phytophthora m... [more]
XP_008618163.12.400e-3069.77splicing factor 3B subunit 5 [Saprolegnia diclina ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003705NSK003705Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01640.1NO05G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100004g88gene2345Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01640.1NO05G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01640 ID=NO05G01640|Name=NO05G01640|organism=Nannochloropsis oceanica|type=gene|length=651bp
ATGgtaagtcttcagtcttccctcccccttcctacgaagggaccgtcatc
acggctttccgtcatcacgatgcagccactcacccacgcctcatgtcgac
gtacagGCGGCCGACCGATTTAACATAAACCGTAGTTGGGAGCATTTGCA
AAATAAGTATGTGGGCACAGGTCACCCAGACCTGACCAAACAgtaagtgc
tcgcgggcagggagtaagagagggcttcggggtcgatgataatgcgggga
gcgtggttgagaggcacacgtgagctcatttccagccgcccataatccta
agcgtatttatgcatcgagagcagtcttattggccttatcgtaggcgtat
catgtggtatactttattaaagaggcgttggttgtctggcggtgttctca
tccctcctcttgttctgcgtgccatgtccctttcccactcgtctgtccca
ctttccgctcccaacagTGAATGGCTGACAAATCAGCACCGAGACACCTA
CGCCACCCATCTGGGCCACCACGACCAGCTGGCTTACATTGCCGTCGCGC
AAAATGACGCCGTGGGGCGTGTCCGCTACCAGATGCTCGAGAAGATGTTA
CAGCCTTGCGGGCCACCACCTGCGGCAAAGGATGACGAAGATGAGGATTA
A
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protein sequence of NO05G01640.1

>NO05G01640.1-protein ID=NO05G01640.1-protein|Name=NO05G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQ
LAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDEDED*
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Synonyms
Publications