NO05G01550, NO05G01550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO05G01550 vs. NCBI_GenBank
Match: EWM28147.1 (hypothetical protein Naga_100004g78 [Nannochloropsis gaditana]) HSP 1 Score: 354.4 bits (908), Expect = 2.800e-94 Identity = 175/228 (76.75%), Postives = 194/228 (85.09%), Query Frame = 0 Query: 13 VAVAL---NQATAFFLPASTPILTMRSRSEAPGQEQQGIQRTERTRGLASAQLQEGMHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGDHDIEAMVLVDRGDRFFQATKFYAFGAPDGSVVIRWFDKIPEGWALLGKVHYITLPWTEKTGKFKSGWMEVDEDD 238 VAVAL NQA AF PA T S A Q ++ RT RTRGL+SAQLQ+GMHGTGSRFLSIQQLKGDELMPRIIP+AGVYPGIT E MAP STPSPSYGRWAY+FSDP+GPQVGTVA+PAS LVHAC DPVV+IA+NDALGIDLAG+HDIEAMVLVDRGDRFFQ KFYAF APDGSVV+RWF+++P GW LLG+VHY+TLP+TEKTG+FKSGWMEVDEDD Sbjct: 16 VAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD 243
BLAST of NO05G01550 vs. NCBI_GenBank
Match: XP_002178124.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50938.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 148.3 bits (373), Expect = 3.100e-32 Identity = 75/175 (42.86%), Postives = 105/175 (60.00%), Query Frame = 0 Query: 66 MHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGD--HDIEAMVLVDRGDRFFQATKFYAFGAPDGSVVIRWFD---KIPEGWALLGKVHYITLPWTEKTGKFKSGWMEVDE 236 +HG S FL ++QL D PRI+ IAG YPG+T +EF S + G+W+YDFSDPEGPQVGTVA S LV C DPV +IA + ++G+DL + ++ +VLVDR + F F P+ V+IR + +IP+G +LG+V + +PW K+G+ME DE Sbjct: 19 IHGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPKEITEPVDLIVLVDRSRKGFSERTFLVVDTPEEGVLIRAYGAKVEIPDGSEILGQVLLVQIPWLPSMAPTKTGFMEADE 193
BLAST of NO05G01550 vs. NCBI_GenBank
Match: XP_002287530.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94973.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 141.7 bits (356), Expect = 2.900e-30 Identity = 74/177 (41.81%), Postives = 103/177 (58.19%), Query Frame = 0 Query: 66 MHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGD--HDIEAMVLVDRGDRFFQATKFYAF--GAPDGSVVIRWF---DKIPEGWALLGKVHYITLPWTEKTGKFKSGWMEVDE 236 +HG S FL + Q + + PR++ IAG YPG+T +EF+A S P G+WAYDF+DP GPQ+GTVA P V+ DPVV+IA + LG+ L ++ +VL DR R F KF+ F G G + I F D+IPE +LG+V ++ +PW K KSG+ E D+ Sbjct: 63 LHGESSCFLPLLQNDDEYIAPRVVQIAGAYPGVTAEEFLAVTSEPPAELGQWAYDFTDPNGPQMGTVALPGMTSVYETDDPVVIIAEHPTLGVTLHEKVVDPVDLVVLCDRSKRTFAERKFFVFDDGNKGGELTIGAFTSKDEIPESVTILGQVTFVQIPWLPMMQKKKSGFSEDDD 239
BLAST of NO05G01550 vs. NCBI_GenBank
Match: OEU15326.1 (hypothetical protein FRACYDRAFT_240009 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 133.3 bits (334), Expect = 1.000e-27 Identity = 72/175 (41.14%), Postives = 98/175 (56.00%), Query Frame = 0 Query: 66 MHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGD--HDIEAMVLVDRGDRFFQATKFYAFGAPDGSVVIRWF---DKIPEGWALLGKVHYITLPWTEKTGKFKSGWMEVDE 236 +HG S +L ++QL D PRI+ IAG YPGIT +EF A S P P G+W YDFSDP+GPQ+GTVA S +V C DPVV+IA + +L I L ++ +VLVDR F KF + +++I F +P +LG+ +PW KSG++E DE Sbjct: 40 LHGDNSCYLPLKQLDQDYYGPRIVQIAGAYPGITREEFYATQSEPPPEPGQWNYDFSDPDGPQLGTVAIEGSNVVAVCEDPVVIIAEHTSLSIPLPESIKEPVDIVVLVDRDLNRFAERKFLVLDVGEDALIIAAFPFKTDLPPNCEILGQAVLCQVPWLPSMKPTKSGFLEADE 214
BLAST of NO05G01550 vs. NCBI_GenBank
Match: KOO32998.1 (hypothetical protein Ctob_014310 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 115.5 bits (288), Expect = 2.200e-22 Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 0 Query: 12 LVAVALNQATAFFLPASTPILTMRS---RSEAPGQ------------EQQGIQRTERTRGLASAQLQEGMHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGDHDIEAMVLVDRGD------RFFQATKFYAFGAPDGSVVIRWFDKIPEGWALLGKVHYITLPWTEKTGKFKSGWMEVDED 237 ++++A A L STP+ T + R+ P E+ G+ +T + EG H TG RF+ + + D P ++ +AG +PG++ + + P P P G W Y E G V P SAL+ + D V ++ ++ ALGI+ + E + L+DRGD R F FYAFG +G V IRW ++P GW +LG++ Y +P+ + G G+ E D++ Sbjct: 54 MLSLAACSLLALVLDGSTPVCTQAAAARRAATPAMNVFDIDPTTYNPEKGGLSQT--IANTLRSPRPEGSHSTGYRFMPLSTVSKDS-APALVCLAGFFPGLSTDDLLRPQPLPFPPPGTWNYHVLTGEACSSGVVCLPGSALLDSHPDTVGVVCASTALGIEFPDRSEHEVIALIDRGDVATLDRREFDNQAFYAFGDEEGRVQIRWIAEVPAGWRILGRLLYAQMPFVSRAGT-NRGFAENDDE 295
BLAST of NO05G01550 vs. NCBI_GenBank
Match: CBJ33396.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 109.4 bits (272), Expect = 1.600e-20 Identity = 58/130 (44.62%), Postives = 73/130 (56.15%), Query Frame = 0 Query: 38 SEAPGQEQQGIQRTERTRGLASAQLQEGMHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGDHDIE 168 S APG G+ + RT L+ A EG HG SRFL + Q+ + PRI+ +AG P ITV + MA TP+P G W YDFSDPEGPQ+GTVA P V +PV ++ ND L I + D E Sbjct: 32 SRAPG----GVGASGRTGSLSMAAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTE 157
BLAST of NO05G01550 vs. NCBI_GenBank
Match: CBJ33398.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 97.4 bits (241), Expect = 6.200e-17 Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 0 Query: 87 RIIPIAGVYPGITVQEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLIASNDALGIDLAGDHDIEAMVLVDRGDRFFQATKFYAFGAPDGSVVIRWFDKIP-EGWALLGKVHYITLPW 220 R+ +AG P ITV MA TP+P G W YDFSDPEGPQ+GTVA P V +PV ++ ND L I + D E +R F+ KF+ + P +V+R+F+ P G+A +G+V + P+ Sbjct: 6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM-------NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGIVLAPF 132
BLAST of NO05G01550 vs. NCBI_GenBank
Match: XP_005711030.1 (unnamed protein product [Chondrus crispus] >CDF40736.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 82.0 bits (201), Expect = 2.700e-12 Identity = 61/178 (34.27%), Postives = 88/178 (49.44%), Query Frame = 0 Query: 65 GMHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITVQEFM--APASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPV-VLIASNDALGIDLAGDHDIEAMVLVDR--GDRFFQATKFYAFGAPDGSVVIRWFDKI--PEGWALLGKVHYITLPWTEKTGKFKSGWMEVDE 236 G HG GSRFLS+ ++ +E PRI+ +AG P +TV+EFM P P + P G Q +A ++ C DPV VLI + + L+ D + V+V+R F TKFYA+ A G V + W ++ P+ LG+V + L E+ K KS W E +E Sbjct: 103 GKHGEGSRFLSMSAVEAEEHFPRILTVAGRVPELTVKEFMETPPVLQNRPPNAGNMFVTMLPPGYQGQIIAMQGLEVIAKCMDPVAVLIPAEELSAAQLSISDDADIAVVVERNVSKLDFDKTKFYAW-AVGGRVKVGWVKEMPSPDNAKCLGQVVFGMLEEKEELRKKKSCWEEENE 279 The following BLAST results are available for this feature:
BLAST of NO05G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 8
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G01550 ID=NO05G01550|Name=NO05G01550|organism=Nannochloropsis oceanica|type=gene|length=4438bpback to top protein sequence of NO05G01550.1 >NO05G01550.1-protein ID=NO05G01550.1-protein|Name=NO05G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bpback to top Synonyms
Publications
|