NO05G01530, NO05G01530 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G01530 vs. NCBI_GenBank
Match: EWM28290.1 (ribosomal large subunit pseudouridine synthase a [Nannochloropsis gaditana]) HSP 1 Score: 368.2 bits (944), Expect = 3.600e-98 Identity = 219/464 (47.20%), Postives = 280/464 (60.34%), Query Frame = 0 Query: 1 MHVASTPKTIHDLDALGAQVDLSLLYVDDHLIVVNKQVGLSTIPGNTLVKGEGTDEASSIEVKPPVPLESSTADAVMLPSLLALDEDLKQYSAVSAQPALAQGNDTTSSSPPLAAXXXXXXXXXXXXXXXXXXXXKRTHQELWMDMLTEDPVTLQHTLNLSADPYLARTLASLLAHKSSVPRKRHIFVEWGVRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKER-----------TLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 M P + L AL A+ +L +LYVD +I+VNK GL+TIPGN+LVK E + S + S + A ND SS+ + +RTHQELWMDMLT+D ++L+ ++N+ AD +LA+ ASL+AHKSSVPRKR F++WG+R LKA + + +YE L +AFEA+EG R DSVQTRLL VFQ +KTVHRLDCETSG VLART++AARSLS QFREK+V KRY+ALV WPQ +GE+ LPIR DRETRPKQ++D + GK+ +TLFR +GT D + + RVELTPLTGRTHQLRVHMAALGHPI+GDSIYS+ D+ S+M F+KP+ +E++ GCV E++E+ T ARLHLHAE+L F HP SGER+ F A A F Sbjct: 1 MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGS--------------------------------GSSSTRGAAQDTNDIRSSTEQFMS-----------------KKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRV--LGTQRMGD---KEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPF--------QENI----------GCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_076716452.1 (RNA pseudouridine synthase [Motiliproteus sp. MSK22-1] >OMH38764.1 RNA pseudouridine synthase [Motiliproteus sp. MSK22-1]) HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34 Identity = 98/262 (37.40%), Postives = 131/262 (50.00%), Query Frame = 0 Query: 192 VRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 + I+ A S ++ L + + N QDSV RL + F ++ VHRLDC TSG +VLA + R+LS QF+E+K KRY+A + G P G V LP+R D E RPKQ++D E+GK + T ++ + E TRV LTP+TGR+HQLRVHM A+GHPI GD Y+ G+ T +D RLHLHAE L HP+SGE++ F A PF Sbjct: 2 IEIIYADSQIVLINKPHDLLSVPGRGPNNQDSVLLRLQQQFPTIRIVHRLDCATSGVMVLALDADSHRALSIQFQERKTAKRYIARIYGQP--NNDSGSVDLPLRCDWENRPKQMVDFEQGKSALTHWQVIEYS---------EDCTRVALTPVTGRSHQLRVHMLAMGHPIAGDRFYASGEALTAAD----------------------------------------------RLHLHAESLELFHPLSGEKVCFTAPCPF 206
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_067868322.1 (RNA pseudouridine synthase [Neptuniibacter marinus]) HSP 1 Score: 147.1 bits (370), Expect = 1.300e-31 Identity = 91/235 (38.72%), Postives = 125/235 (53.19%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R+ +F + VHRLD TSG +VLA T++A RSL+ F+E++ KRY A++ G P Q G V LP+R D E RP Q++D E+GK + T ++ + ++ E+ TRVELTP+TGR+HQLRVHM A+GHPILGD Y+ D EG + + RL LHAE LSF HPI+GE + F PF Sbjct: 29 DKQDCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISGTP--EQSEGSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESS-------EQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYA---------------------------DTEG-------------------QAKSDRLLLHAEQLSFPHPITGEFVEFFVPCPF 208
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_017404835.1 (RluA family pseudouridine synthase [Delftia tsuruhatensis] >SFB55137.1 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [Delftia tsuruhatensis]) HSP 1 Score: 143.3 bits (360), Expect = 1.900e-30 Identity = 88/237 (37.13%), Postives = 126/237 (53.16%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R L+ + VHRLD TSG +++AR++ + R LS F +++V KRYVA+V G P Q + LPI +D E RP +++D +GK S+TL+R + AA + TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+ + ++ RL LHA++L HP+SGE +RFE+ APF Sbjct: 45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPTARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQAAEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233
BLAST of NO05G01530 vs. NCBI_GenBank
Match: OJX26189.1 (RNA pseudouridine synthase [Delftia sp. 67-8]) HSP 1 Score: 143.3 bits (360), Expect = 1.900e-30 Identity = 88/237 (37.13%), Postives = 126/237 (53.16%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R L+ + VHRLD TSG +++AR++ + R LS F +++V KRYVA+V G P Q + LPI +D E RP +++D +GK S+TL+R + AA + TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+ + ++ RL LHA++L HP+SGE +RFE+ APF Sbjct: 45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPTARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQAAEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233
BLAST of NO05G01530 vs. NCBI_GenBank
Match: PKO35414.1 (RNA pseudouridine synthase [Betaproteobacteria bacterium HGW-Betaproteobacteria-7]) HSP 1 Score: 142.9 bits (359), Expect = 2.400e-30 Identity = 95/263 (36.12%), Postives = 128/263 (48.67%), Query Frame = 0 Query: 191 GVRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 G+ IL A ++ L + + ++ D + +RL F VHRLD TSG L++AR +LS FRE++VGKRY+A V+GC GE+ LP+ D RP+Q +D E GK S T +R V + + +RVEL P+TGR+HQLRVHMAALGHPILGD +Y G+ T G RLHLHA L+F HP+S E ++F +APF Sbjct: 11 GLEILYADDALLVVDKPAGLLSVPGRGADKADCLISRLQAKFADALAVHRLDMSTSGLLLVARGAAMHSALSRLFRERQVGKRYLAEVEGC--LATTAGEIELPLICDWPNRPRQKVDFEIGKHSLTRYRLVSIDAE-------RQTSRVELEPVTGRSHQLRVHMAALGHPILGDELYGSGNPET-----------------------------------------------GERLHLHATDLAFVHPLSAEYLQFHCKAPF 217
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_043791159.1 (RluA family pseudouridine synthase [Delftia tsuruhatensis] >KEH08354.1 pseudouridine synthase [Delftia tsuruhatensis]) HSP 1 Score: 142.5 bits (358), Expect = 3.200e-30 Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R L+ + VHRLD TSG +++AR++ + R LS F +++V KRYVA+V G P+ Q + LPI +D E RP +++D +GK S+TL+R + A + TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+ + ++ RL LHA++L HP+SGE +RFE+ APF Sbjct: 45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPVARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_047216906.1 (RluA family pseudouridine synthase [Delftia lacustris]) HSP 1 Score: 142.1 bits (357), Expect = 4.200e-30 Identity = 87/237 (36.71%), Postives = 125/237 (52.74%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R L+ + VHRLD TSG +++AR++ + R LS F +++V KRYVA+V G P Q + LPI +D E RP +++D +GK S+TL+R + A + TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+ + ++ RL LHA++L HP+SGE +RFE+ APF Sbjct: 45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPAARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPSAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_016446332.1 (MULTISPECIES: RluA family pseudouridine synthase [Delftia] >EPD42763.1 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase [Delftia acidovorans CCUG 274B] >SDZ19999.1 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [Delftia lacustris]) HSP 1 Score: 141.7 bits (356), Expect = 5.500e-30 Identity = 87/237 (36.71%), Postives = 125/237 (52.74%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R L+ + VHRLD TSG +++AR++ + R LS F +++V KRYVA+V G P Q + LPI +D E RP +++D +GK S+TL+R + A + TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+ + ++ RL LHA++L HP+SGE +RFE+ APF Sbjct: 45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPTARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_046240204.1 (MULTISPECIES: RluA family pseudouridine synthase [Delftia] >AOV01215.1 RNA pseudouridine synthase [Delftia tsuruhatensis]) HSP 1 Score: 141.7 bits (356), Expect = 5.500e-30 Identity = 87/237 (36.71%), Postives = 125/237 (52.74%), Query Frame = 0 Query: 219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454 ++QD + R L+ + VHRLD TSG +++AR++ + R LS F +++V KRYVA+V G P Q + LPI +D E RP +++D +GK S+TL+R + A + TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+ + ++ RL LHA++L HP+SGE +RFE+ APF Sbjct: 45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPAARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233 The following BLAST results are available for this feature:
BLAST of NO05G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G01530 ID=NO05G01530|Name=NO05G01530|organism=Nannochloropsis oceanica|type=gene|length=1869bpback to top protein sequence of NO05G01530.1 >NO05G01530.1-protein ID=NO05G01530.1-protein|Name=NO05G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bpback to top Synonyms
Publications
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