NO05G01300, NO05G01300 (gene) Nannochloropsis oceanica

Overview
NameNO05G01300
Unique NameNO05G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length323
Alignment locationchr5:372598..372920 +

Link to JBrowse

Properties
Property NameValue
DescriptionTransmembrane protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:372598..372920 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G01300 vs. NCBI_GenBank
Match: EWM28229.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-15
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0 
Query:    2 WVFSYKDMEIIVKPEDMKARTPWTAWVDILPWDMVSDFQEIVLNGFGICTKMQKKSTPALSPKKGATPV 71
            +VFSYKDMEIIV+P  MK    W AW+DILPWD++SDF+E V NGFG+  KMQKK+    SPK G   V
Sbjct:  380 YVFSYKDMEIIVEPNKMKPHPSWAAWIDILPWDVISDFREQVFNGFGLRRKMQKKNR---SPKSGVGAV 445
The following BLAST results are available for this feature:
BLAST of NO05G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28229.11.400e-1560.87transmembrane protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003741NSK003741Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01300.1NO05G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100004g53gene2313Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01300.1NO05G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01300 ID=NO05G01300|Name=NO05G01300|organism=Nannochloropsis oceanica|type=gene|length=323bp
ATGTGGGTTTTCTCGTACAAGGACATGGAAATTATCGTCAgtaagtaaaa
ggaagggagacagcggagggaggagtcgatagcaaggtgtaaatcaacta
gaataacgtcacacttacacacatgaccttactaacagAACCCGAAGATA
TGAAGGCCCGTACCCCATGGACGGCATGGGTTGACATTTTGCCCTGGGAT
ATGGTGAGCGATTTCCAGGAGATCGTTCTCAACGGCTTTGGCATCTGCAC
CAAGATGCAAAAAAAGTCTACGCCGGCTTTGAGCCCTAAAAAGGGTGCTA
CACCGGTGATTGTAACTCCATGA
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protein sequence of NO05G01300.1

>NO05G01300.1-protein ID=NO05G01300.1-protein|Name=NO05G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MWVFSYKDMEIIVKPEDMKARTPWTAWVDILPWDMVSDFQEIVLNGFGIC
TKMQKKSTPALSPKKGATPVIVTP*
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Synonyms
Publications