NO05G01280, NO05G01280 (gene) Nannochloropsis oceanica

Overview
NameNO05G01280
Unique NameNO05G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length761
Alignment locationchr5:365206..365966 +

Link to JBrowse

Properties
Property NameValue
DescriptionArginine serine-rich splicing factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:365206..365966 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
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BLAST of NO05G01280 vs. NCBI_GenBank
Match: XP_005852762.1 (arginine serine-rich splicing factor [Nannochloropsis gaditana CCMP526] >EKU23070.1 arginine serine-rich splicing factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.1 bits (401), Expect = 1.600e-35
Identity = 85/128 (66.41%), Postives = 103/128 (80.47%), Query Frame = 0 
Query:   83 LKAECDQFLQSLTGGLGSSSSGNAAPSSSLPASQSLTPGASASTSSRIWLNSGNAAKYACYDAALNLIKELLTPHYRAQVIDKNGFKRLAEEVTLLLVQQLLEHRLEGRVDVPAHYKRVAENLVREAL 211
            LKAEC+QFLQ+LTGG+ S+ +  + PSS         P  S+STSSRIWLNS NAA YACY+AALNL+K+LLTPHYRAQVIDK+ FKR+AEE TLLLVQQLL+HRLE + +VPA++K VA +LVR AL
Sbjct: 1016 LKAECEQFLQTLTGGVSSTGTNASFPSS--------PPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTAL 1135
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BLAST of NO05G01280 vs. NCBI_GenBank
Match: EWM28200.1 (arginine serine-rich splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 159.1 bits (401), Expect = 1.600e-35
Identity = 85/128 (66.41%), Postives = 103/128 (80.47%), Query Frame = 0 
Query:   83 LKAECDQFLQSLTGGLGSSSSGNAAPSSSLPASQSLTPGASASTSSRIWLNSGNAAKYACYDAALNLIKELLTPHYRAQVIDKNGFKRLAEEVTLLLVQQLLEHRLEGRVDVPAHYKRVAENLVREAL 211
            LKAEC+QFLQ+LTGG+ S+ +  + PSS         P  S+STSSRIWLNS NAA YACY+AALNL+K+LLTPHYRAQVIDK+ FKR+AEE TLLLVQQLL+HRLE + +VPA++K VA +LVR AL
Sbjct: 1016 LKAECEQFLQTLTGGVSSTGTNASFPSS--------PPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTAL 1135
The following BLAST results are available for this feature:
BLAST of NO05G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852762.11.600e-3566.41arginine serine-rich splicing factor [Nannochlorop... [more]
EWM28200.11.600e-3566.41arginine serine-rich splicing factor [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01280.1NO05G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01280.1NO05G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01280 ID=NO05G01280|Name=NO05G01280|organism=Nannochloropsis oceanica|type=gene|length=761bp
ATGGTGGCCGACGGCGTTCTCGCTCCCGCTCACCTCCACGTGGAGTGGTT
CCTCCGCCGCTCCCTCCCTACCCTGGCGATCAAGGCCGCAAACGCTCCCG
TGATCGTCCCAGGGGCAGCCTGGGCCGTTCGCGTTCTCGTTCTCCGTCAA
ACCGGAGGCACCGTGCCGAGGGTGgtgtggacccgcgagcggctatgcag
ctccctcccggccctccttctcaaggacgggacacctaccctcccatgca
caatcatctgcctcctcccatgtcacagAACCCTCCGCGCTCTCACCGAG
GTGGTGCTGTGGCTTCAAGTGCTGCTTTTGGTGGAGGAGCGCCTCCGCCT
CTCAAGGCCGAGTGTGACCAGTTTCTGCAATCCTTGACGGGCGGCTTGGG
CAGTAGTAGTAGTGGAAATGCTGCGCCATCGTCCTCCTTGCCTGCTTCTC
AATCCTTGACTCCTGGTGCGTCTGCATCCACCTCATCTCGGATTTGGCTT
AATTCGGGCAATGCAGCTAAATATGCATGCTACGACGCGGCACTGAACCT
TATCAAAGAGCTGCTCACACCGCATTACCGTGCCCAAGTTATTGACAAAA
ATGGTTTCAAACGCCTCGCGGAAGAAGTTACCTTGCTATTAGTCCAGCAG
TTGCTGGAGCATCGTTTGGAAGGGCGGGTGGACGTGCCAGCGCATTACAA
GAGGGTGGCGGAAAATTTGGTGAGAGAGGCCTTGCGGGGGCAGGGGGCAG
GGATCATGTAA
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protein sequence of NO05G01280.1

>NO05G01280.1-protein ID=NO05G01280.1-protein|Name=NO05G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MVADGVLAPAHLHVEWFLRRSLPTLAIKAANAPVIVPGAAWAVRVLVLRQ
TGGTVPRVNPPRSHRGGAVASSAAFGGGAPPPLKAECDQFLQSLTGGLGS
SSSGNAAPSSSLPASQSLTPGASASTSSRIWLNSGNAAKYACYDAALNLI
KELLTPHYRAQVIDKNGFKRLAEEVTLLLVQQLLEHRLEGRVDVPAHYKR
VAENLVREALRGQGAGIM*
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Synonyms
Publications