NO05G01270, NO05G01270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G01270 vs. NCBI_GenBank
Match: EWM28200.1 (arginine serine-rich splicing factor [Nannochloropsis gaditana]) HSP 1 Score: 501.5 bits (1290), Expect = 4.300e-138 Identity = 320/532 (60.15%), Postives = 356/532 (66.92%), Query Frame = 0 Query: 6 GSSSTSIANPASLATATASAPSGLQALLVSSPTNQPQPRSGPPVAEDQIQNTLKCPICIDWFTDPILLDCSHSLCLDCARRLALHDGGTNTAEVTCPLCKEVTAVTGGDKAREMEDALIADALKRFDVVPPRKSRARIEDLRTCYEAFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTEEALGEKRPES----------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXDPMKQLRFKKNILLANLVAHFREQQEQRTGSPVAGITTSTRGLQEEEEAYDDDVFMEEGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQFQSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRAMARWHDNVWRGRHFFIDYALRENISKEDPYPRGD 510 G+S+T+ A+PASL S AL + RS PPVAEDQI+NTLKCPICIDWF +PILLDCSHSLCLDCARRLALHD G+NTAEVTCPLCKEVTA++GGDKAREME+ALIA+ALKRFDV+PPRKSRARIEDLR CYE FIKNGLVAIGPNDAKPTALHMWRAVVARMESQT+E LGE + ES XXXXXXXXXXXXXXXXXXXXXXXXXXX + G V G + E+ D +E+ XXXXXXXXXXXX +GSRHV+VGNLPNGVKEEHLRE FK YGG+ESVR+LRRT Q MTGFLHFK+ AEAIRAKKELD KPFV G LP+ MKIQ+QSRG N+P RSIRVHNLP DL ELF FGRV + V+N NSNI FL+LE VEQA++AMARWHD WRGRH F+DYALRE ISKEDP+ RG+ Sbjct: 19 GTSATT-AHPASLPIPPLPLSSPAAAL-----SQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTKDGQEVEGKEEGYGSPEGEKGEAAADPSVEQXXXXXXXXXXXXXXXXSSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGE 544
BLAST of NO05G01270 vs. NCBI_GenBank
Match: XP_005852762.1 (arginine serine-rich splicing factor [Nannochloropsis gaditana CCMP526] >EKU23070.1 arginine serine-rich splicing factor [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 493.8 bits (1270), Expect = 8.900e-136 Identity = 318/532 (59.77%), Postives = 350/532 (65.79%), Query Frame = 0 Query: 6 GSSSTSIANPASLATATASAPSGLQALLVSSPTNQPQPRSGPPVAEDQIQNTLKCPICIDWFTDPILLDCSHSLCLDCARRLALHDGGTNTAEVTCPLCKEVTAVTGGDKAREMEDALIADALKRFDVVPPRKSRARIEDLRTCYEAFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTEEALGEKRPES----------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXDPMKQLRFKKNILLANLVAHFREQQEQRTGSPVAGITTSTRGLQEEEEAYDDDVFMEEGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQFQSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRAMARWHDNVWRGRHFFIDYALRENISKEDPYPRGD 510 G+S+T+ A+PASL S AL + RS PPVAEDQI+NTLKCPICIDWF +PILLDCSHSLCLDCARRLALHD G+NTAEVTCPLCKEVTA++GGDKAREME+ALIA+ALKRFDV+PPRKSRARIEDLR CYE FIKNGLVAIGPNDAKPTALHMWRAVVARMESQT+E LGE + ES XXXXXXXXXXXXXXXXXXXXXXXXXXX + G V G XXXXXXXXXXXXX +GSRHV+VGNLPNGVKEEHLRE FK YGG+ESVR+LRRT Q MTGFLHFK+ AEAIRAKKELD KPFV G LP+ MKIQ+QSRG N+P RSIRVHNLP DL ELF FGRV + V+N NSNI FL+LE VEQA++AMARWHD WRGRH F+DYALRE ISKEDP+ RG+ Sbjct: 19 GTSATT-AHPASLPIPPLPLSSPAAAL-----SQHAGSRSSPPVAEDQIENTLKCPICIDWFVEPILLDCSHSLCLDCARRLALHDSGSNTAEVTCPLCKEVTAISGGDKAREMEEALIAEALKRFDVIPPRKSRARIEDLRACYEGFIKNGLVAIGPNDAKPTALHMWRAVVARMESQTQETLGEAKNESSPSSSTVIETTAIHPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTKDGQEVEGKEEGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPKVEQGGPGRSPGERGPSRWDAGHGKVAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQYQSRGNNKPCRSIRVHNLPVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKEDPHLRGE 544
BLAST of NO05G01270 vs. NCBI_GenBank
Match: XP_018287932.1 (hypothetical protein PHYBLDRAFT_188184 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD69892.1 hypothetical protein PHYBLDRAFT_188184 [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 90.5 bits (223), Expect = 2.300e-14 Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 0 Query: 336 SRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQA 473 SR +W+GN+ + E+L F YG +ESVR+L + F++F ET +AI AK E+ G+ + GK+ Q ++I + ++RP R++ + NLPP TTS L +LFS FG VE V N F+ E ++ A Sbjct: 247 SRSLWIGNIDRSITTEYLTHTFIAYGPIESVRLLM---EKECAFVNFFETEDAIHAKDEVLGR--LNGKIGQCTVRIGYGRADAVSSEANVSRPTRALWLGNLPPDTTSGSLEQLFSTFGFVESVRVLSYKNCAFINFEKIDNA 385
BLAST of NO05G01270 vs. NCBI_GenBank
Match: EPB81089.1 (hypothetical protein HMPREF1544_12216 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 86.7 bits (213), Expect = 3.300e-13 Identity = 47/147 (31.97%), Postives = 86/147 (58.50%), Query Frame = 0 Query: 336 SRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRA 476 +R +WVGN+ + V + L ++F +G +ESVR+L + GF++F +T +A+RAK+E+ G+ +GG++ Q ++I + + +P R++ + N+P TT L +F+ FG++E V + N GF+ E+V A +A Sbjct: 354 TRSLWVGNIDHTVTIDLLTQVFSNFGAIESVRLL---VEKECGFVNFFQTEDAVRAKEEVLGR--MGGRIGQCIVRIGYGKADAAVTETNVLQPTRALWLGNIPGNTTPTSLQSIFAVFGQIESVRVLSHKNCGFINFESVNSAVKA 495
BLAST of NO05G01270 vs. NCBI_GenBank
Match: EIE81332.1 (hypothetical protein RO3G_06037 [Rhizopus delemar RA 99-880]) HSP 1 Score: 85.5 bits (210), Expect = 7.300e-13 Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 0 Query: 336 SRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRAMARWHDNVWRGRHFFIDY-ALRENISKEDPYP 507 SR +WVGN+ +GV E L ++F +G +ESVR+L + F++F +AIRAK+ D +GG++ ++I F +++P R++ + N+P TT A L +FS FG +E V + N GF+ N E AD A+A D + + + F + A R +K P P Sbjct: 310 SRSLWVGNIDSGVTIEMLTQVFSMFGPIESVRLLL---EKECAFINFFHVEDAIRAKE--DVLTHMGGRIGNCIVRIGFGKADAVVTETNVSQPTRALWLGNIPGNTTPASLQSIFSTFGTIESVRVLSHKNCGFI---NFESADDAVAA-RDALLQNKIFAPGFSAARVGFAKIPPTP 479
BLAST of NO05G01270 vs. NCBI_GenBank
Match: OBZ85194.1 (Pumilio domain-containing protein C56F2.08c [Choanephora cucurbitarum]) HSP 1 Score: 85.1 bits (209), Expect = 9.600e-13 Identity = 49/147 (33.33%), Postives = 83/147 (56.46%), Query Frame = 0 Query: 336 SRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRA 476 SR +WVGN+ + + L ++F +G +ESVR+L + GF++F + +AIRAK+E+ G +GG++ ++I F + +P R++ + N+P TT L ++FSE+G +E V + N GF+ E VE A +A Sbjct: 340 SRSLWVGNIDQTITIDLLTQVFSAFGPIESVRLL---VEKECGFVNFFQVEDAIRAKEEILG--HMGGRIGHCIVRIGFGKADAAVTETTVLQPTRALWLGNIPGNTTPTCLQDVFSEYGTIESVRVLSHKNCGFINFETVESAIKA 481
BLAST of NO05G01270 vs. NCBI_GenBank
Match: CEP14734.1 (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 84.3 bits (207), Expect = 1.600e-12 Identity = 47/146 (32.19%), Postives = 83/146 (56.85%), Query Frame = 0 Query: 337 RHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRA 476 R +WVGN+ N + + L ++F +G +ESVR+L + GF++F + +AIRAK+E+ G+ +GG++ Q ++I + + +P R++ + N+P TT L +F+ FG +E V + N GF+ E+V A +A Sbjct: 334 RSLWVGNIDNTITIDLLTQVFSNFGAIESVRLL---VEKECGFVNFFQIEDAIRAKEEVLGR--MGGRIGQCIVRIGYGKADAAVTETNVLQPTRALWLGNIPGNTTPTSLQGIFAVFGEIESVRVLSHKNCGFINFESVSSAVKA 474
BLAST of NO05G01270 vs. NCBI_GenBank
Match: GAN00707.1 (hypothetical protein MAM1_0001c00129 [Mucor ambiguus]) HSP 1 Score: 82.8 bits (203), Expect = 4.800e-12 Identity = 46/146 (31.51%), Postives = 83/146 (56.85%), Query Frame = 0 Query: 337 RHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRA 476 R +WVGN+ + V + L ++F +G +ESVR+L + GF++F + +A+RAK E+ G+ +GG++ Q ++I + + +P R++ + N+P TT L +F+ FG++E V + N GF+ E+V A +A Sbjct: 360 RSLWVGNIDHTVTIDILTQVFSNFGAIESVRLL---VEKECGFVNFFQIEDAVRAKDEVLGR--MGGRIGQCIVRIGYGKADAAVTETNVLQPTRALWLGNIPGNTTPTSLQSIFAVFGQIESVRVLSHKNCGFINFESVNSAVKA 500
BLAST of NO05G01270 vs. NCBI_GenBank
Match: OAD07165.1 (hypothetical protein MUCCIDRAFT_77839 [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 82.8 bits (203), Expect = 4.800e-12 Identity = 47/146 (32.19%), Postives = 83/146 (56.85%), Query Frame = 0 Query: 337 RHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQADRA 476 R +WVGN+ V + L ++F +G +ESVR+L + GF++F + +AIRAK+E+ G+ +GG++ Q ++I + + +P R++ + N+P TT L +F+ FG++E V + N GF+ E+V A +A Sbjct: 358 RSLWVGNIDPTVTIDLLTQVFSNFGAIESVRLL---VEKECGFVNFFQIEDAIRAKEEVLGR--MGGRIGQCIVRIGYGKADAAVTETNVLQPTRALWLGNIPGNTTPTSLQSIFAVFGQIESVRVLSHKNCGFINFESVNSAVKA 498
BLAST of NO05G01270 vs. NCBI_GenBank
Match: CEG66422.1 (hypothetical protein RMATCC62417_03009 [Rhizopus microsporus]) HSP 1 Score: 82.4 bits (202), Expect = 6.200e-12 Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 0 Query: 336 SRHVWVGNLPNGVKEEHLREIFKGYGGVESVRMLRRTPQSMTGFLHFKETAEAIRAKKELDGKPFVGGKLPQNAMKIQF-------QSRGINRPLRSIRVHNLPPKTTSADLVELFSEFGRVEVAVVNVNSNIGFLALENVEQA 473 SR +WVGN+ N + E L ++F +G +ESVR+L + F++F +A+RAK+ D +GG++ ++I F +++P R++ + N+P TT A L +F FG +E V + N GF+ E VE A Sbjct: 365 SRSLWVGNIDNSITIETLTQVFSMFGPIESVRLLL---EKECAFINFFHVEDAVRAKE--DVLTHMGGRIGNCIVRIGFGKADAAVTETNVSQPTRALWLGNIPGNTTPASLQSIFGTFGTIESVRVLSHKNCGFINFETVEDA 503 The following BLAST results are available for this feature:
BLAST of NO05G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G01270 ID=NO05G01270|Name=NO05G01270|organism=Nannochloropsis oceanica|type=gene|length=2819bpback to top protein sequence of NO05G01270.1 >NO05G01270.1-protein ID=NO05G01270.1-protein|Name=NO05G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=718bpback to top Synonyms
Publications
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