NO05G01120, NO05G01120 (gene) Nannochloropsis oceanica

Overview
NameNO05G01120
Unique NameNO05G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2153
Alignment locationchr5:327449..329601 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:327449..329601 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G01120 vs. NCBI_GenBank
Match: EWM28209.1 (hypothetical protein Naga_100004g37 [Nannochloropsis gaditana])

HSP 1 Score: 788.9 bits (2036), Expect = 1.300e-224
Identity = 400/619 (64.62%), Postives = 482/619 (77.87%), Query Frame = 0 
Query:  105 VGEILHGKGLSSTVSKAIKREGPTLSLAPVLFLGACEDASRTLLSELFEFARPPTTSGAHVTIARFGDSADDEDEEVGERQAIALITTLVSEEEDLSSGAFTAMSHTVAAGFALGNDVVWTVSFSDVLRGELRGGMAVLQAALEQYIGFEGKGLIDTEAPVKTLHLVVTDVGKEEGEELGLGKALEKHVSAMWRKLIKPAGSISEDEEEGDEDGLLTPPGWTRIMNVNVIYLPSKAYASSEHTAVVSSLKASLDKKLEKTNPFILASALQSSI--------STLTSSSSPLPS-------------------------FQQDSRQLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGHDAGPIHTSLQGLDAGQVSAVVKVKKEQLRKALLGLAEAGYARQLLFLKQMAQEEFRKGISSLKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGGKWKATAEKELRSLSKILETQADDVIERTRASGGFVPSKLRRPIGIQVNWLGANFFHFLRDSSVDPLSVRTDSGVALWQNLGETWASRDGKDQRVSARYRQMYGEEVDPMVMDYLSVSPKGVGLNDKDPRVKFGWNRRVAYELVRNHDDMTFQIPHAKAIKDY 691
            + E   G+ + STVS+A+ REGP LSLAP+LF+G  +++SR +LSELFEF  P  ++G+HV ++ FGD+   E +  G+RQAIAL+TTLVS EED  +GAF   +   A  F  GNDVVW+V+ +DVLRG+L GG ++ QA LEQ++ FE  GL+D     KTLHL+VTDVGKEE EELGL K +E+ ++ +WR+LI P GS  ++EE  +E   L+ P WTR++N+NVI+ PSK YA SE    ++SLK +LD+KL  ++PF+ AS L+ SI        S L++S+ P  S                         F+QD+R LLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYG DAGPIH SL GL+AGQV+AVV+ +KE L +ALLGL E GY RQL FLKQMAQEEFRKGIS+LKYQWELIPGFAKAIKAAKALFVDRAGKLACARSG  WK+ A+KELRSLSK+LETQAD+VIERTRASGGFVPSKLRRPIG+QVNWLGANFFHFLRDSSVDPLS+RTDSGVALW+ LGETWASRDGKDQRVSARYR +YGE++D  VMDYL  SPKGVGLND+DPR++FGWN++VAY+LVRNHDDMTFQ+PHAKAI  Y
Sbjct:   72 IRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDL-GGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY 689
The following BLAST results are available for this feature:
BLAST of NO05G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28209.11.300e-22464.62hypothetical protein Naga_100004g37 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003756NSK003756Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01120.1NO05G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583752gene_2903Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g37gene2298Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01120.1NO05G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01120 ID=NO05G01120|Name=NO05G01120|organism=Nannochloropsis oceanica|type=gene|length=2153bp
ATGGAGCGGTGGCAAAGAAGACGGCAGGGCCTGTGCGGGGTGGCCGTGCT
GCTGAGCCTTTTCCTGACCACAACTACGAACGCAGCCATCACAAGCCCAA
CATCACCACCAGTAGCAGCCGCCATCTGCTCCGGCCTCTTCTCCTCCTCG
TCCTCCTTTCCCTCTTCCTTTTCCTCTTCCTCCTCGTCCTCGTCCTCCTC
GTCCTCCTCCTCCTTTTCCTCTTCGTCCTCCTCGTTTTCCTCCCCTTTCA
GTGGAGCTAGCGCTTCCTATTTCTTATCTAAAGCCCGCGGCGGTTCCTCC
TCATCCCAACGCGTGGGCGAAATTCTGCATGGCAAAGGCCTTTCCTCGAC
TGTCTCCAAAGCCATTAAACGTGAAGGCCCCACCCTCTCCCTCGCACCTG
TCCTCTTCCTCGGCGCCTGCGAAGATGCCTCCCGCACCCTCCTCTCTGAG
CTTTTTGAATTCGCCCGACCCCCAACCACGAGCGGTGCACATGTGACGAT
TGCTCGTTTTGGGGACTCGGCAGATGACGAGGACGAGGAAGTGGGGGAGC
GACAGGCCATAGCGCTCATTACCACCTTGGTTTCGGAAGAAGAAGACTTG
TCCTCAGGTGCTTTCACCGCGATGTCCCACACTGTGGCGGCCGGATTTGC
GCTGGGAAACGACGTTGTTTGGACGGTGTCGTTCTCGGATGTGCTGAGGG
GAGAGTTGAGGGGAGGGATGGCGGTGCTCCAGGCAGCGCTGGAGCAGTAC
ATAGGATTTGAAGGAAAGGGTTTAATCGACACGGAAGCACCTGTGAAGAC
ATTGCATTTGGTTGTGACGGATGTTGGGAAAGAGGAGGGCGAGGAGTTGG
GGTTAGGCAAGGCGTTGGAGAAGCACGTGAGTGCGATGTGGCGGAAGTTG
ATCAAACCGGCGGGGAGCATCAGTGAGGACGAAGAAGAAGGAGACGAGGA
CGGATTGTTGACGCCGCCGGGGTGGACGCGGATTATGAATGTGAATGTGA
TTTACTTGCCCAGCAAGGCCTATGCATCTTCTGAGCACACCGCTGTCGTC
TCCTCCCTCAAGGCCAGCCTCGACAAAAAGCTGGAGAAAACCAACCCCTT
CATCCTGGCCTCTGCCCTGCAATCCTCCATTTCTACCCTCACCTCCTCCT
CCTCCCCCCTTCCCTCCgtttttcgtccttgcccaaggccgacactgtcg
tctcgtccttctatctggacaagcttgtggcccgctacgcgtcgcagTTC
CAACAAGATTCCCGCCAACTACTTGAGGAATTGAACACCGGCTACGACGA
AGATTTCGGCCGTACCTTCACCGAGCTCATCGAGAAATACCTCTCCGATT
TCCACCAAGAGGTCTATGGACACGACGCTGGCCCCATCCATACCTCTCTC
CAGGGACTGGACGCCGGGCAGGTTTCGGCGGTCGTCAAGGTGAAAAAGGA
GCAGTTGCGGAAGGCCTTGCTGGGGTTGGCGGAGGCAGGGTACGCGCGGC
AACTGCTGTTTCTGAAACAAATGGCACAGGAAGAGTTCAGGAAAGGCATC
AGTAGCTTGAAATACCAGTGGGAATTAATCCCGGGTTTCGCCAAAGCGAT
CAAGGCGGCGAAGGCCTTATTTGTGGACCGAGCGGGGAAGCTTGCGTGTG
CCAGGAGTGGTGGCAAGTGGAAGGCGACCGCCGAGAAGGAGCTGCGGAGT
TTGTCCAAGATCCTCGAGACGCAGGCGGATGATGTGATTGAGCGCACGCG
GGCATCGGGGGGTTTCGTGCCCTCCAAACTCCGGCGGCCGATTGGGATCC
AGGTCAATTGGCTGGGTGCGAATTTCTTCCATTTCTTGAGGGATAGCTCG
GTGGACCCGCTGAGTGTGAGAACGGACAGCGGGGTGGCGTTATGGCAAAA
TCTGGGGGAGACGTGGGCGAGTCGGGATGGGAAGGACCAGAGGGTCAGTG
CGCGGTACAGGCAGATGTATGGGGAGGAGGTTGATCCGATGGTGATGGAC
TACTTGTCGGTGTCGCCGAAAGGGGTGGGATTGAATGACAAGGATCCGCG
GGTGAAGTTTGGGTGGAACAGGCGGGTGGCATATGAGTTGGTGAGGAACC
ATGACGACATGACGTTTCAGATTCCGCATGCTAAGGCAATCAAGGATTAT
TAA
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protein sequence of NO05G01120.1

>NO05G01120.1-protein ID=NO05G01120.1-protein|Name=NO05G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bp
MERWQRRRQGLCGVAVLLSLFLTTTTNAAITSPTSPPVAAAICSGLFSSS
SSFPSSFSSSSSSSSSSSSSSFSSSSSSFSSPFSGASASYFLSKARGGSS
SSQRVGEILHGKGLSSTVSKAIKREGPTLSLAPVLFLGACEDASRTLLSE
LFEFARPPTTSGAHVTIARFGDSADDEDEEVGERQAIALITTLVSEEEDL
SSGAFTAMSHTVAAGFALGNDVVWTVSFSDVLRGELRGGMAVLQAALEQY
IGFEGKGLIDTEAPVKTLHLVVTDVGKEEGEELGLGKALEKHVSAMWRKL
IKPAGSISEDEEEGDEDGLLTPPGWTRIMNVNVIYLPSKAYASSEHTAVV
SSLKASLDKKLEKTNPFILASALQSSISTLTSSSSPLPSFQQDSRQLLEE
LNTGYDEDFGRTFTELIEKYLSDFHQEVYGHDAGPIHTSLQGLDAGQVSA
VVKVKKEQLRKALLGLAEAGYARQLLFLKQMAQEEFRKGISSLKYQWELI
PGFAKAIKAAKALFVDRAGKLACARSGGKWKATAEKELRSLSKILETQAD
DVIERTRASGGFVPSKLRRPIGIQVNWLGANFFHFLRDSSVDPLSVRTDS
GVALWQNLGETWASRDGKDQRVSARYRQMYGEEVDPMVMDYLSVSPKGVG
LNDKDPRVKFGWNRRVAYELVRNHDDMTFQIPHAKAIKDY*
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Synonyms
Publications