NO05G01110, NO05G01110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G01110 vs. NCBI_GenBank
Match: EWM28277.1 (50s ribosomal protein l20 [Nannochloropsis gaditana]) HSP 1 Score: 229.6 bits (584), Expect = 7.000e-57 Identity = 119/158 (75.32%), Postives = 130/158 (82.28%), Query Frame = 0 Query: 1 MAPSWLGILSFRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSRGLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRSQ 159 M SWLG L RRA ++ A P + S+ L PF+Q SR LANHRHKKI+KMAKGYRGRTNCFR+AVQRVEKALQYAYRDRKVKKREFRS+WIQRIGAAVQQYGMNYSRFIPGL+RANITLNRKVLAD+AV+EPYSFKAVVETVRSQ Sbjct: 1 MMSSWLGSLVLRRAATVATIRAGSQPD-AVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
BLAST of NO05G01110 vs. NCBI_GenBank
Match: CBJ48761.1 (50S ribosomal protein L20P [Ectocarpus siliculosus]) HSP 1 Score: 148.3 bits (373), Expect = 2.000e-32 Identity = 72/106 (67.92%), Postives = 93/106 (87.74%), Query Frame = 0 Query: 54 NHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRSQ 159 NHRHKKI+K+AKGYRGR+ + F++A+QRVEKALQ AYRDRK KKREFR +WI+RI A V+Q+GM YS F+ ++A++ LNRKVLA+MAVTEPYSF+AVVETV+++ Sbjct: 5 NHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 110
BLAST of NO05G01110 vs. NCBI_GenBank
Match: PIZ32582.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium CG_4_10_14_0_8_um_filter_37_21]) HSP 1 Score: 145.2 bits (365), Expect = 1.700e-31 Identity = 71/103 (68.93%), Postives = 89/103 (86.41%), Query Frame = 0 Query: 53 ANHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVET 155 A+ RHKKIIK+AKGYRGR+ NCFR+A+QRVEKALQYAYRDR+ KKREFR++WIQRI AAV++YGM YS FI GL +A + L+RKV+ADMA+ P +FK +V+T Sbjct: 10 AHKRHKKIIKLAKGYRGRSKNCFRIALQRVEKALQYAYRDRRNKKREFRALWIQRINAAVREYGMKYSTFINGLNKAGVELDRKVMADMAMNTPKAFKDLVKT 112
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OFW80991.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_34] >OFW85575.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_40_8] >OFW95008.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26] >OFX10544.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_40_19] >OFX12091.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_11]) HSP 1 Score: 143.7 bits (361), Expect = 5.000e-31 Identity = 68/103 (66.02%), Postives = 89/103 (86.41%), Query Frame = 0 Query: 56 RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RHKKI+KMAKGYRGR NCFR+A+++VEKA+QYAYRDRKV+KR+FRS+WIQRI AAV+++G+ YSRFI GLK A I L+RKVL+D+A+ EP +F +VE ++ Sbjct: 13 RHKKILKMAKGYRGRAKNCFRVAIEKVEKAMQYAYRDRKVRKRDFRSLWIQRINAAVREHGLIYSRFISGLKAAQIDLDRKVLSDLAIREPETFGKIVEKAKA 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_010302273.1 (50S ribosomal protein L20 [Candidatus Odyssella thessalonicensis]) HSP 1 Score: 143.3 bits (360), Expect = 6.600e-31 Identity = 70/109 (64.22%), Postives = 92/109 (84.40%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157 RG+ H RHKKIIKMAKGYRGR++ CFR A+QRVEK LQYAYRDR+VKKR FR++WIQRI A V++YG+NYS F+ GL +A I ++RK+LA +A++ P +FK++VETV+ Sbjct: 6 RGVTTHARHKKIIKMAKGYRGRSSTCFRPAIQRVEKGLQYAYRDRRVKKRNFRALWIQRINAGVREYGLNYSTFMGGLIKAGINVDRKILAGLAMSYPETFKSIVETVQ 114
BLAST of NO05G01110 vs. NCBI_GenBank
Match: XP_009035407.1 (hypothetical protein AURANDRAFT_8683, partial [Aureococcus anophagefferens] >EGB09885.1 hypothetical protein AURANDRAFT_8683, partial [Aureococcus anophagefferens]) HSP 1 Score: 142.5 bits (358), Expect = 1.100e-30 Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 0 Query: 50 RGLANHRHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RG A+ +HKK IK+AKGYRGR N CFR+AVQRVEKA QYAYRDRKVKKRE R WI+ I A+ + YG+ Y+RFI G++ A+I LNRKVLAD+AV EP SF +V+E R+ Sbjct: 1 RGFASRKHKKFIKLAKGYRGRANRCFRIAVQRVEKAWQYAYRDRKVKKREMRKSWIRSINASSRAYGVPYNRFIAGMRSADIDLNRKVLADLAVNEPLSFLSVLEVTRA 109
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_038465301.1 (50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae] >AIK96685.1 50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae]) HSP 1 Score: 142.1 bits (357), Expect = 1.500e-30 Identity = 70/109 (64.22%), Postives = 90/109 (82.57%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157 RG+ H RHKKIIKMAKGYRGR+ CFR A+QRVEK LQYAYRDR+ KKR FR++WIQRI A V++YG+NYS F+ GL +A I ++RKVLA +A++ P +FK++VETV+ Sbjct: 6 RGVTTHARHKKIIKMAKGYRGRSGTCFRPAIQRVEKGLQYAYRDRRAKKRTFRALWIQRINAGVREYGLNYSTFMGGLIKAGIDMDRKVLAGLAMSNPETFKSIVETVQ 114
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_038602345.1 (50S ribosomal protein L20 [Rickettsiales bacterium Ac37b] >AIL64909.1 Ribosomal protein L20 [Rickettsiales bacterium Ac37b]) HSP 1 Score: 142.1 bits (357), Expect = 1.500e-30 Identity = 65/103 (63.11%), Postives = 92/103 (89.32%), Query Frame = 0 Query: 56 RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RHKKI+K+AKGYRGR+ NC+R+A+++VEKAL+YAYRDR+ +KR+FR++WIQRI AAV++YG+ YSRFI G+ ++ IT++RKVLAD+AV EP +FK+VVE ++ Sbjct: 13 RHKKILKLAKGYRGRSKNCYRIAIEKVEKALRYAYRDRRNRKRDFRALWIQRINAAVREYGLVYSRFIDGINKSGITMDRKVLADLAVREPEAFKSVVEQAKA 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OYZ36605.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium 16-39-46] >OZA42148.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium 17-39-52]) HSP 1 Score: 141.4 bits (355), Expect = 2.500e-30 Identity = 69/110 (62.73%), Postives = 94/110 (85.45%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RG+ H RHKKI+K+AKGYRGR++ CFR+AV++VEK L YAYRDRK KKREFR++WIQRI AAV++YGM YS+FI GLK+A I ++RKVL+++A++E +FK +V+ VR+ Sbjct: 6 RGVTTHNRHKKILKLAKGYRGRSSTCFRVAVEKVEKGLLYAYRDRKAKKREFRALWIQRINAAVREYGMIYSQFIFGLKKAGIEMDRKVLSELAISEKETFKGLVDEVRN 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_045797523.1 (50S ribosomal protein L20 [Orientia chuto] >KJV55200.1 ribosomal protein L20 [Orientia chuto str. Dubai]) HSP 1 Score: 141.0 bits (354), Expect = 3.300e-30 Identity = 68/110 (61.82%), Postives = 93/110 (84.55%), Query Frame = 0 Query: 48 QSRGLANHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157 +S ++ +RHKKI+K+AKGYRGR NCFR+A+Q+VEKALQY+YRDR+ +KR+FR++WIQRI AAV+QYG+ YS+FI GLK+ANIT++RKV+AD+AV SF +VE + Sbjct: 5 KSGKVSKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYGITYSQFISGLKQANITIDRKVMADLAVHNSDSFLHLVELTK 114 The following BLAST results are available for this feature:
BLAST of NO05G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G01110 ID=NO05G01110|Name=NO05G01110|organism=Nannochloropsis oceanica|type=gene|length=741bpback to top protein sequence of NO05G01110.1 >NO05G01110.1-protein ID=NO05G01110.1-protein|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bpback to top Synonyms
Publications
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