NO05G01020, NO05G01020 (gene) Nannochloropsis oceanica

Overview
NameNO05G01020
Unique NameNO05G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length997
Alignment locationchr5:300900..301896 -

Link to JBrowse

Properties
Property NameValue
DescriptionER membrane protein complex subunit 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:300900..301896 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029615Emc10
Homology
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BLAST of NO05G01020 vs. NCBI_GenBank
Match: EWM28275.1 (hypothetical protein Naga_100004g25 [Nannochloropsis gaditana])

HSP 1 Score: 286.2 bits (731), Expect = 1.100e-73
Identity = 150/225 (66.67%), Postives = 176/225 (78.22%), Query Frame = 0 
Query:   12 LLLAALPLGTTSGMVTYKLQHAFGLTATFQDRGSIDVLVDSGALTLIPPAENQPVLVPEGSLDEIAREMRQPDGGLYRLRAQRSD-APAPVIMTSVHLCDLVRAGFRENITLTLDVDGRLLGLEYTPRMSRLSPTTCLAMKSPLD--------EVNRNTDGTRRDAVADRGPSAFSTLIKASVDQAGQSLPVFVPGQRPPMIQIRYDEQERRPEVEKSFLQKYWI 228
            LLL+   L   S +VTYKLQHAFG+T  FQDRGS++VLVDSGALTLIPP E Q VLVPE SLDEIAREM+  +GG+YRLRAQ SD   +PV+MTSVHLCD+VRAGFRENITLTLDV+GRL+GLEYTPRMSRLSP+TC  +K PLD        EV R T G + D+V+   P AF T +KASVD +G+S+PV VPGQRPP+I IR ++Q  +PE  KSFLQKYWI
Sbjct:   49 LLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVS--SPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWI 271
The following BLAST results are available for this feature:
BLAST of NO05G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28275.11.100e-7366.67hypothetical protein Naga_100004g25 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003768NSK003768Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01020.1NO05G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583719gene_2893Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g25gene2288Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01020.1NO05G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01020 ID=NO05G01020|Name=NO05G01020|organism=Nannochloropsis oceanica|type=gene|length=997bp
ATGCCGCCCCCCCGCTTCATCCTCGCCCTTACCCTCCTCCTGGCGGCCCT
CCCTTTGGGCACCACGAGTGGCATGGTTACCTACAAGCTGCAGCATGCCT
TTGGACTCACAGCCACCTTCCAGGACCGGGGTAGCATTGATGTCTTAGTG
GACAGTGGGGCACTCACCCTCATTCCGCCTGCGGAAAACCAGCCCGTGCT
CGTGCCCGAGGGGTCCTTGGACGAGATAGCCCGTGAAATGAGGCAGCCCG
ACGGCGGGTTGTACCGTTTGCGGGCGCAGCGCAGCGATGCCCCAGCTCCT
GTGATCATGACGAGTGTCCATCTCTGCGACTTGGTCCGTGCGGGGTTCCG
GGAGAATATCACACTGACGCTTGATGTGGATGGACGGCTGTTGGGATTGG
AGTACACGCCGCGCATGAGCCGCTTGTCGCCCACGACATGCCTGGCAATG
AAATCCCCCTTGGACGAAGTCAATCGCAACACCGATGGAACGAGGAGAGA
TGCCGTAGCCGATAGGGGGCCTTCGGCATTCTCTACGCTAATTAAGGCAT
CTGTGGACCAGGCAGGGCAGAGTCTTCCGGTGTTTGTGCCCGGACAGAGG
CCCCCGATGATTCAAATTCGATACGACGAACAGGAACGAAGGCCGGAGGT
GGAGAAGAGTTTTTTACAAAAATATgtaagttgagacgggaagggaagga
ggaagggatgggcaacgagagttgccggcacaggcacagtggcatggcag
tcaacatatacaagatcttccccttttaccaatttattcttacgtttctc
tcattttctttttgttccattttgcacacaataagTGGATTTTTATCGTC
TTGGCTTTCTTACTTCTCAACTCAGGGGCAGCGCCACCGGAAGAAGGAGG
AGCTGGAGGAGGCGCGGGGGGTCAAGTACCACCTCTACAACAAGGACATG
GGCATGGCGTGCCCAGGGATGGTGGAGGAGGGCAAAAACGGGACTGA
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protein sequence of NO05G01020.1

>NO05G01020.1-protein ID=NO05G01020.1-protein|Name=NO05G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MPPPRFILALTLLLAALPLGTTSGMVTYKLQHAFGLTATFQDRGSIDVLV
DSGALTLIPPAENQPVLVPEGSLDEIAREMRQPDGGLYRLRAQRSDAPAP
VIMTSVHLCDLVRAGFRENITLTLDVDGRLLGLEYTPRMSRLSPTTCLAM
KSPLDEVNRNTDGTRRDAVADRGPSAFSTLIKASVDQAGQSLPVFVPGQR
PPMIQIRYDEQERRPEVEKSFLQKYWIFIVLAFLLLNSGAAPPEEGGAGG
GAGGQVPPLQQGHGHGVPRDGGGGQKRD*
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Synonyms
Publications