NO05G00990, NO05G00990 (gene) Nannochloropsis oceanica

Overview
NameNO05G00990
Unique NameNO05G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1033
Alignment locationchr5:297415..298447 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:297415..298447 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO05G00990 vs. NCBI_GenBank
Match: XP_005853633.1 (hypothetical protein NGA_2085600, partial [Nannochloropsis gaditana CCMP526] >EKU22727.1 hypothetical protein NGA_2085600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 242.7 bits (618), Expect = 9.000e-61
Identity = 130/175 (74.29%), Postives = 149/175 (85.14%), Query Frame = 0
Query:    1 MMGILLLLALVATSATTTLGFIMPAAHPIASPVRTLVTAVAAAPSAVVVETFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGPAPREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQCQLSALVDALKLYKQTYKIKMEASNA 176
            M  +L LLA +AT+A +T+ F++PA H + S V+T   AV  A  AVVVETFILPMGDDSRLKIRC+ ETFKDLALRVNALLASFR IKAANAAEDK GPAPREPSLEFL  +FET LEMECNPNIYPDAFHA VFVKV+N+VLEVTSQCQLSALVDALKLYK TYK++++A+ +
Sbjct:   10 MRSVLFLLA-IATAARSTVSFVLPAKHQV-SHVQTSAAAVVGASPAVVVETFILPMGDDSRLKIRCKPETFKDLALRVNALLASFRAIKAANAAEDKTGPAPREPSLEFLVTDFETRLEMECNPNIYPDAFHAAVFVKVQNDVLEVTSQCQLSALVDALKLYKSTYKVELDANKS 182          
BLAST of NO05G00990 vs. NCBI_GenBank
Match: OSX76720.1 (hypothetical protein BU14_0177s0002 [Porphyra umbilicalis])

HSP 1 Score: 70.9 bits (172), Expect = 4.700e-9
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   41 AAAPSAVVVETFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGPAPREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQCQLSALVDALKLYKQTYK 168
            +AAP         L  GDD+ + +         +   +NALLASF+ +  A AA    G    +P++EF+ +     + +ECNPN++  AF ATV+VKV +  + V +Q  L+ LVD +K +K   K
Sbjct:   60 SAAPRTSAPPVLTLNTGDDTTITVALPVGAVAPMGAALNALLASFKAVATAAAA----GKRDVQPAMEFVHEEEGLRVALECNPNLHASAFKATVYVKVASGGVVVATQALLTRLVDNVKEFKAAVK 182          
BLAST of NO05G00990 vs. NCBI_GenBank
Match: CBJ29163.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 61/179 (34.08%), Postives = 92/179 (51.40%), Query Frame = 0
Query:    1 MMGI-LLLLALVATSATTTLGFIMP----------AAHPIASPVRTLVTAVAAAPS-AVVVETFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGPAPREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQCQLSALVDALKLYKQTYK 168
            M GI  L  AL A    T  GF+ P           A   ++P  +   A A     A  +  F + + DD+R+    + +  + LA  VN +L SF+ +K ANAAE   G   +E S+E+       ++ +ECNPNI+PD F A VFV+V ++ +EV+SQ  L+ L DA+K +   +K
Sbjct:    1 MRGIGALCCALAAVHGVT--GFVAPLSPRGFGQQQTARAFSAPSSSQQPAAARLRMVATDLPKFTVSLMDDTRVSFHMDEKDVRKLADVVNNILRSFKRLK-ANAAEG--GKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRVYDDKMEVSSQAMLTKLTDAIKQHLALFK 174          
BLAST of NO05G00990 vs. NCBI_GenBank
Match: XP_005708867.1 (hypothetical protein isoform 1 [Galdieria sulphuraria] >EME32347.1 hypothetical protein isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 67.4 bits (163), Expect = 5.200e-8
Identity = 36/120 (30.00%), Postives = 62/120 (51.67%), Query Frame = 0
Query:   45 SAVVVETFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGPAPREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQCQLSALVDALKLYKQ 165
            +  V     +P+ DD++L           L  ++N L+ SFRN   A A   K      +P+ E+  +     + MECNPN++  AF A V+++V ++ + V SQ  L+ L+D L+ +K+
Sbjct:   54 NVAVTRPLTIPLQDDTQLTFMFSYADMLQLVEKLNQLVLSFRNAAEATAQRKK----TVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQASLTTLMDVLRKWKR 169          
The following BLAST results are available for this feature:
BLAST of NO05G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005853633.19.000e-6174.29hypothetical protein NGA_2085600, partial [Nannoch... [more]
OSX76720.14.700e-933.86hypothetical protein BU14_0177s0002 [Porphyra umbi... [more]
CBJ29163.11.400e-834.08conserved unknown protein [Ectocarpus siliculosus][more]
XP_005708867.15.200e-830.00hypothetical protein isoform 1 [Galdieria sulphura... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003770NSK003770Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00990.1NO05G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583715gene_2891Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00990.1NO05G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00990 ID=NO05G00990|Name=NO05G00990|organism=Nannochloropsis oceanica|type=gene|length=1033bp
CTTCATTCCTACTCTCTCGACCCTTCTTGTAAAAGTTCGAGCGTGCTTCA
GTCAACCAACCCCCGCACAGGAGCTGTCTTGTCGTTATTTATTCCACTTT
TTCCTCCTTGCTTCTGACTTCATGCCACGCTCGCGCTTGCACCGCACGCA
TCCCCGTGAGAAACGACGGCAACATCAACAACCGCAGGATACACTGCCGT
CGTGCTCGTGTTTGTTCCGTGCACAGGCAAATCAGGAAGAACGCACGTCA
GACACGCATTGATCCCATTTAAGCACCATTCTTACAATGCTCTTGCTCGC
TTTCTCTTCCTGTTCCACTCCCTGGCTCACGTAAATCGCCTTTCCTCCAC
TATCCACCACACGCACAGACCTCCTCCCTCCCTCCTCTCTTCAAGCCAAG
CATGATGGGCATTCTCCTCCTCCTCGCATTGGTCGCCACAAGCGCAACCA
CCACCCTGGGCTTCATAATGCCTGCTGCACATCCCATAGCCTCACCCGTC
CGCACGCTCGTCACCGCCGTCGCTGCCGCCCCCAGTGCGGTGGTAGTGGA
GACGTTCATATTGCCCATGGGTGACGACTCACGCTTGAAAATCCGCTGCG
AGTCAGAAACTTTCAAAGACCTGGCTTTACGCGTGAATGCACTATTGGCT
TCTTTCCGCAATATTAAGGCCGCCAATGCAGCAGAGGACAAGAAGGGACC
AGCACCTCGCGAGCCGTCTTTGGAATTCTTGACGAAGAACTTTGAGACGC
ATTTGGAGATGGAATGCAACCCCAATATTTACCCCGATGCGTTCCATGCG
ACGGTATTTGTGAAGGTCAAAAATGAAGTGTTGGAGGTTACGTCGCAGTG
TCAGTTGAGTGCGTTAGTGGATGCTTTAAAGCTCTACAAGCAGACTTACA
AGATCAAGATGGAGGCGAGCAATGCAGAGCCGAGCAACTAGGCCAGCAAG
TCGAGGAATGGGACATATGTGGGTCAGTGATATGCAGAATTGGAAATTAT
GGGACTTTGGAAGAAAAATACGTGAACTGATTA
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protein sequence of NO05G00990.1

>NO05G00990.1-protein ID=NO05G00990.1-protein|Name=NO05G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MMGILLLLALVATSATTTLGFIMPAAHPIASPVRTLVTAVAAAPSAVVVE
TFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGP
APREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQC
QLSALVDALKLYKQTYKIKMEASNAEPSN*
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Synonyms
Publications