NO05G00960, NO05G00960 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G00960 vs. NCBI_GenBank
Match: EWM28253.1 (dimethyl-8-ribityllumazine synthase [Nannochloropsis gaditana]) HSP 1 Score: 367.5 bits (942), Expect = 3.200e-98 Identity = 186/234 (79.49%), Postives = 206/234 (88.03%), Query Frame = 0 Query: 1 MLRFPSLVATTLLLLACVLRQATAFVMPRPALPTMSSNSRMLIAPLSMSKDLVGFGEDLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAMAKGPNRATLPLTEKPGDTPDEKKQERQFGF 235 M+R P++VA +AC+L+ AFV PRP L + + S M + PL MSKDLVGFG+DLDGS CRIGIVKTRWNPEIVDSLYEGVRAAL ETGVKD N+YDTTVPGSFELPLAARFLA+SRQCDVVITIGCLIKG+TMHFEYIAEAVTKGLMDIQLQTTIPVIFG+LTVL ++QA+ RSKGENNHGISWGKTAVEMALLR AA+AKGPNRATLPLTEK DTP+EKKQ +QFGF Sbjct: 28 MVRLPTIVA-----VACLLQGIAAFVTPRPVLLSPARPS-MRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF 255
BLAST of NO05G00960 vs. NCBI_GenBank
Match: CBN77125.1 (6,7-dimethyl-8-ribityllumazine synthase [Ectocarpus siliculosus]) HSP 1 Score: 206.5 bits (524), Expect = 9.300e-50 Identity = 107/207 (51.69%), Postives = 143/207 (69.08%), Query Frame = 0 Query: 14 LLACVLRQATAFVMPRPALPTMSS-------------NSRMLIAPLSMSKDLVGFGEDLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAMAKG 208 L AC R A+AFV P ++ + + +SR A M+ + V FGE LDG+ R+GI+ TRWN EIV+ L +GV+ +LKE V ++NI++T VPG+FELPLAARFL++S+ D V+ +GCLIKGDTMHFEYIAE+ KGLMD+ +QT+ PV+ G+LT ++QAI RS G+NNHG+ WGKTAVEM LLR +A G Sbjct: 14 LFAC--RTASAFVAPAASIRALRNAPAGGASTTSTYGSSRGAPATRMMAAEGVTFGE-LDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTESNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVG 217
BLAST of NO05G00960 vs. NCBI_GenBank
Match: GAX17980.1 (6,7-dimethyl-8-ribityllumazine synthase [Fistulifera solaris]) HSP 1 Score: 203.0 bits (515), Expect = 1.000e-48 Identity = 104/181 (57.46%), Postives = 131/181 (72.38%), Query Frame = 0 Query: 24 AFVMPRPALPTMSSNSRMLIAPLSMSKDLVGFGEDLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAM 205 AFV+ P L SS + + A +S D +LDGS RIGI+KTRWN E V++L G++ LKE V D NI++T+VPGSFELP+AARFLA++ CD +IT G LIKGDTMHFE+IA+AV KG+M+I LQT+ PV+FG+LT N+ Q RS G+NNHG WGKTAVEMALLRT A+ Sbjct: 7 AFVVQTPLL---SSKTALQAADSDVSFD------NLDGSQMRIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEAL 178
BLAST of NO05G00960 vs. NCBI_GenBank
Match: GAX17543.1 (6,7-dimethyl-8-ribityllumazine synthase [Fistulifera solaris]) HSP 1 Score: 193.4 bits (490), Expect = 8.200e-46 Identity = 90/140 (64.29%), Postives = 112/140 (80.00%), Query Frame = 0 Query: 65 RIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAM 205 RIGI+KTRWN E V++L G++ LKE V D NI++T+VPGSFELP+AARFLA++ CD +IT G LIKGDTMHFE+IA+AV KG+M+I LQT+ PV+FG+LT N+ Q RS G+NNHG WGKTAVEMALLRT A+ Sbjct: 2 RIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEAL 141
BLAST of NO05G00960 vs. NCBI_GenBank
Match: OEU22250.1 (Lumazine synthase, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 188.3 bits (477), Expect = 2.600e-44 Identity = 85/141 (60.28%), Postives = 112/141 (79.43%), Query Frame = 0 Query: 58 DLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMAL 199 DLDGS RIGI++TRWN E V +L +G R ALKE VK+ NI++T++PG++ELPL+ARFLA+S D ++T G LIKG+TMHFEYI++AV+ GLM +QLQTT P+++G+L L++ Q RS G+NNHG WGKTAVEMAL Sbjct: 1 DLDGSDIRIGIIRTRWNDEHVTNLVDGCRKALKECNVKEENIFETSIPGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYISDAVSSGLMSVQLQTTCPIVYGVLNCLDEGQVKSRSSGDNNHGEDWGKTAVEMAL 141
BLAST of NO05G00960 vs. NCBI_GenBank
Match: XP_002179359.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49182.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 187.6 bits (475), Expect = 4.500e-44 Identity = 86/141 (60.99%), Postives = 114/141 (80.85%), Query Frame = 0 Query: 58 DLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMAL 199 DLDGSA RIGI++TRWN E V +L +G++ L+ V++ NI++T+VPG+FELP+AARFLA+S D +IT G LIKG+TMHFEYI++AV KG+M+I LQT+ PVIFG+LT L++ Q RS G++NHG+ WGKTAVEMAL Sbjct: 3 DLDGSAMRIGIIRTRWNDEHVTNLVDGIKEGLRACQVEEDNIFETSVPGAFELPMAARFLALSGTVDAIITTGVLIKGETMHFEYISDAVAKGIMNIGLQTSTPVIFGVLTCLDEAQVQARSSGDSNHGVDWGKTAVEMAL 143
BLAST of NO05G00960 vs. NCBI_GenBank
Match: CEM26950.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 187.6 bits (475), Expect = 4.500e-44 Identity = 113/255 (44.31%), Postives = 149/255 (58.43%), Query Frame = 0 Query: 7 LVATTLLLLACVLRQATAFVMPR-PALPTMSSN---------SRMLIAPLSMSKDLVG--------FGED---LDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAMAK-------------GPNRATLPLTEKPGDTPDEKK 228 L++++ LLL L A +F P P LP S L P + +D+ G D L+GS +IGI+KTRWN +IVD+L +GV+ L E V NI + VPGS+ELPLA RFLA+S Q D +++IG LIKGDT+HFEYIAE+V+ GLM++QLQT P +FG+LT LN +QA RS G +NHGISWGKTAVEM++LR A+ + P L P TPD+K+ Sbjct: 4 LLSSSALLLLHALPSAVSFYSPTLPPLPASSVRRLRAGTRHVRASLFMPSAWQRDVASKLRMVAPREGVDFPPLNGSDVKIGIIKTRWNKDIVDNLVKGVKEGLTECSVPAENILEIEVPGSYELPLATRFLALSNQVDAIVSIGVLIKGDTLHFEYIAESVSNGLMNVQLQTMTPTVFGVLTCLNLNQAKERSSGPDNHGISWGKTAVEMSVLRRYALGRYRKGSLGFVPTEESPEGEPNNLPATPWPTPDKKR 258
BLAST of NO05G00960 vs. NCBI_GenBank
Match: XP_005772319.1 (hypothetical protein EMIHUDRAFT_444779 [Emiliania huxleyi CCMP1516] >XP_005783542.1 hypothetical protein EMIHUDRAFT_434395 [Emiliania huxleyi CCMP1516] >EOD19890.1 hypothetical protein EMIHUDRAFT_444779 [Emiliania huxleyi CCMP1516] >EOD31113.1 hypothetical protein EMIHUDRAFT_434395 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 187.2 bits (474), Expect = 5.900e-44 Identity = 93/179 (51.96%), Postives = 128/179 (71.51%), Query Frame = 0 Query: 30 PALPTMSSNSRMLIAPLSMSKDLVGFGEDLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAMAKGP 209 P++P S +R A + M+ D FG DLDGS RIGI+K RW+PE+ DSL G + AL GVK+ NI +T VPGS+ELPLAAR++A+S D ++ +G LIKGDT HFE I+++V+ GLM + +QT +P++FG+LT ++++QA VRS G NHG WG+ AVEMALLR +A+ GP Sbjct: 16 PSVPATGSRAR--AAAVRMAGDGPSFG-DLDGSTARIGIIKARWHPEMSDSLIAGAKEALAACGVKEENIVETEVPGSYELPLAARYMALSGSVDAILPVGILIKGDTYHFEAISDSVSSGLMSVGMQTGVPILFGVLTCMSEEQARVRSIGPGNHGPDWGRAAVEMALLRQSAVG-GP 190
BLAST of NO05G00960 vs. NCBI_GenBank
Match: XP_005827094.1 (hypothetical protein GUITHDRAFT_154245 [Guillardia theta CCMP2712] >EKX40114.1 hypothetical protein GUITHDRAFT_154245 [Guillardia theta CCMP2712]) HSP 1 Score: 168.3 bits (425), Expect = 2.800e-38 Identity = 78/154 (50.65%), Postives = 108/154 (70.13%), Query Frame = 0 Query: 59 LDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLRTAAMAKGPNRAT 213 LDG R+GIV TRWN E+V+ L +G RA LKE V+D+N+ + VPGS+ELPLA R++A +++ D +I IG L+KG+T H++ I +A T LM + L+T IPV+ G+L +QA R+ G+NNHG+ WGKTA+EMA LR M KGP A+ Sbjct: 68 LDGKGMRVGIVSTRWNAEVVNKLKDGARAGLKECQVEDSNVVEFEVPGSWELPLACRYMAQTQKVDAIIAIGVLVKGETDHYDMIKDAATDALMMLGLETGIPVLNGILGCHTMEQAEARATGDNNHGVWWGKTAIEMATLRATQMGKGPIAAS 221
BLAST of NO05G00960 vs. NCBI_GenBank
Match: XP_004365556.1 (6,7-dimethyl-8-ribityllumazine synthase subunit [Capsaspora owczarzaki ATCC 30864] >KJE89156.1 6,7-dimethyl-8-ribityllumazine synthase subunit [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 164.5 bits (415), Expect = 4.100e-37 Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 0 Query: 59 LDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIYDTTVPGSFELPLAARFLAMS--RQCDVVITIGCLIKGDTMHFEYIAEAVTKGLMDIQLQTTIPVIFGLLTVLNKDQAIVR-----SKGENNHGISWGKTAVEMALLRT 202 L+G RIGIV+ RWNP ++D+L G RAAL E+GV +++I + VPGS+ELP AA L S + D V+ +GCLIKG+TMHFEYI EAVT+G+M + L + PV+FG+L L DQA+ R S ++NHGI WGK AVEMALLRT Sbjct: 13 LNGRGLRIGIVRARWNPTVIDALNAGCRAALLESGVAESDIVEVMVPGSYELPFAASVLLNSADAKVDAVVCLGCLIKGETMHFEYICEAVTQGIMRLNLDSGKPVMFGVLACLTMDQALARAGLGDSPSKHNHGIDWGKGAVEMALLRT 162 The following BLAST results are available for this feature:
BLAST of NO05G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G00960 ID=NO05G00960|Name=NO05G00960|organism=Nannochloropsis oceanica|type=gene|length=1025bpback to top protein sequence of NO05G00960.1 >NO05G00960.1-protein ID=NO05G00960.1-protein|Name=NO05G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bpback to top Synonyms
Publications
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