NO05G00950, NO05G00950 (gene) Nannochloropsis oceanica

Overview
NameNO05G00950
Unique NameNO05G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2166
Alignment locationchr5:289999..292164 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:289999..292164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00950 vs. NCBI_GenBank
Match: EWM28283.1 (hypothetical protein Naga_100004g10 [Nannochloropsis gaditana])

HSP 1 Score: 263.5 bits (672), Expect = 2.000e-66
Identity = 186/384 (48.44%), Postives = 215/384 (55.99%), Query Frame = 0 
Query:  335 WWVLRWWPFPSVSSWDMRKWVVPQDCAFKRGWDMLTVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAIWFLVDLALSFRTEVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRDPRAIAIQYLSRDFWLDLCLSFPWLAIAALLLTPKRKKRNAMRRALGHVGRGLGGFLGKLKNGVGSKIPRFLRPDNVKRFFVWTRLLEVKKVDGVKHVVKYRKEYRGLRMCIRGIKWLCRFPVASFIWRVHRKLEAHLVVAVEEVWGDDREEERKAKVWRAGQSRRGGMALSPSLLMVEEEWGGYKGEENRSFHGGE-DGERGGG 718
            WW+LRW P PS      R WV+ QD  +KR WDMLTV+                                  XXXXXXXXXXXXXXXXXXXXXXXXX           E  WFL DLAL+FRTEVE                                                  LL DP AIA+QYL+RDFWLDLC SFPWLAI+ALLL PK+KKRN +RRA+GHVGRG+GG L         KIPR LRP NVKRF  WT++L+VKKVDGVKHVVKYR  YRGLR+ IR ++WLCRFPV SF+WRV+RKLEAHLVVA+ +  G + E +   KVWRA  +R  G   S      E+    ++ + NR FH GE D E  GG
Sbjct:  346 WWLLRWRPLPSWFGRHSRPWVLRQDSPWKRAWDMLTVL--------VALLVLCYDAASLVHLHPGPFPPGPIXXXXXXXXXXXXXXXXXXXXXXXXXDATSLYHLLLLETFWFLADLALAFRTEVE-------------------------------------AGVDSEAETETLVLLTDPHAIAVQYLTRDFWLDLCFSFPWLAISALLLAPKQKKRNLLRRAIGHVGRGVGGLLXXXXXXXXXKIPRMLRPGNVKRFLEWTKVLDVKKVDGVKHVVKYRSGYRGLRLFIRALRWLCRFPVVSFLWRVYRKLEAHLVVALPDGEGGEEERKTPGKVWRARHTRSRGTHAS---TRQEDYEVKFREKANRKFHTGEVDREAIGG 681
The following BLAST results are available for this feature:
BLAST of NO05G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28283.12.000e-6648.44hypothetical protein Naga_100004g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL084nonsL084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR122ngnoR122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003786NSK003786Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00950.1NO05G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583700gene_2886Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g10gene2275Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00950.1NO05G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00950 ID=NO05G00950|Name=NO05G00950|organism=Nannochloropsis oceanica|type=gene|length=2166bp
ATGGACTTCACAACATTCACAGGCTTTTCTGATACGCCACCCGCGAGCGG
GTGCGACCGGGGAGGCCTGTTTGTCAACTGCCAATCGGAAGCGATGCCCC
ACTATACTCCACCTCCGCCCGGCACCATGAGTAATTATATGGCCAACAAA
AAGCGCAGGCGCGATCGACGTGCTTATCCAATCCCCACCGCCCAGCTTGA
CCACATCAACTCCGGGGGGGTGTCGGTCGCCTCCTCCCCCTCCTCGTCCT
CCCCATCTGCAGCGCAACAAGCGCAAATGCACAAAGAGGGCAGGTGCACG
CACTGCACTTACCGCATCGCACATCGATCTGATAGCAACAAGACCAAGGT
AAAAAGTCGTTTGCCAGATGCGGCTTTTACATTTGATGATGACAAGGAAG
AGGAGAAGGAAGAGATGGAGGACGAAGAAGAGGACGAGGTGCGACGACCT
GTTTCTAAAGTACCCCGACGACAGCGCCTCACGGCCGGCCTTTCCTTGCC
CTTGGTAACAAGAATACAGCCCCAACATCTCGAAGGACGACAAAAAGAGG
ACGAAGAGGAGGAGGAGGGGGAGGAGGCGGCAGCGGTGGAAAGCGGGGAA
GGGGAGGAGGAGGAGTCGATAATTACAGACACGGAGATTCTGGCCGCGAC
GACCGCAACGCGGCAACAATCTCCGCTGCAAGCACTCCGACGGCGTCGAG
CCGTCAATGGTGATGGCACTGGCAGTAACAGGAGCGACCACTCCTTTGGC
ACCACCAGCACCAGCACCAGCACCAGCACCAGAATGGGAGCACCAACGAC
AATGCCATCCAAAAGGCCACCTTCTTCCTCCCTCCGCCTCCCGCACGCTC
ATCCTGTCCGCAACAGCCGACTTAACAGCCATTCTTTCCATTCATCGTCC
TCCTTCACCTCCTCCAACATGCCCAACCCTACCCCCTTCCCCTCCTCCCT
CTACAGCAGCAAGCTCGTCTCTGTCCGCCAAAAGCAACGAGGGCGTGGTC
GATGGTGGGTATTGCGGTGGTGGCCCTTCCCATCGGTTTCATCTTGGGAC
ATGAGGAAGTGGGTCGTGCCACAAGACTGCGCCTTCAAGAGAGGGTGGGA
CATGCTGACGGTGGTTCTGGCAACTGTCGTCTTGTGTAGTGACGCGGCCT
CCCTGATACAGCAACACCAAAACCCGCCCTCCCACCCTTCCTCCTCCTCG
TCTTCCTCGCCGTCAACCTTCCTGTCCAGTGACAATAATTTGGGCGACAG
TTCCAACCCATCTTTCTCCTCGTCCTCCTCCTCGTCCTCCCTCGATCCTT
CCTCTCTCTATCACCTTCTCCTCCTGGAAGCGATTTGGTTTTTGGTCGAC
TTGGCCCTCTCTTTCCGTACCGAAGTGGAAATCGTGCTCGATGATGATGA
TGCTGCTGCTGCGGCTATTGCTGCCGGTCACGTGATGGGGAGACAGGCAG
GGGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGGGGAGAGTGAAACCGAAACAATCCTCCTCCTCCGCGACCCCCGCGC
CATCGCTATTCAATACCTGAGTCGGGATTTTTGGTTGGACTTGTGCCTTT
CCTTCCCGTGGTTGGCGATTGCTGCCTTACTGCTTACGCCAAAGCGGAAG
AAGCGGAATGCAATGAGGCGGGCCTTGGGACACGTGGGCAGAGGGTTAGG
TGGATTTCTAGGGAAGTTGAAAAATGGGGTCGGCTCGAAGATACCGCGAT
TCTTGCGGCCCGACAATGTGAAGAGGTTCTTCGTGTGGACTAGGCTGTTG
GAGGTGAAGAAGGTGGATGGCGTGAAGCATGTGGTGAAGTATAGGAAGGA
ATATAGAGGATTGAGGATGTGTATTCGGGGAATTAAGTGGTTGTGTCGTT
TCCCGGTCGCCTCGTTTATTTGGCGCGTACATCGAAAATTGGAGGCTCAC
TTGGTGGTGGCGGTGGAGGAAGTTTGGGGGGATGACCGGGAGGAAGAGAG
GAAGGCAAAGGTTTGGAGGGCGGGGCAGTCGAGGAGGGGAGGGATGGCAT
TGTCGCCGTCCTTGTTGATGGTGGAGGAGGAGTGGGGAGGTTACAAAGGA
GAGGAGAATAGATCATTCCATGGTGGGGAGGACGGGGAGAGAGGGGGGGG
GGAGGCGGAGGGATAG
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protein sequence of NO05G00950.1

>NO05G00950.1-protein ID=NO05G00950.1-protein|Name=NO05G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MDFTTFTGFSDTPPASGCDRGGLFVNCQSEAMPHYTPPPPGTMSNYMANK
KRRRDRRAYPIPTAQLDHINSGGVSVASSPSSSSPSAAQQAQMHKEGRCT
HCTYRIAHRSDSNKTKVKSRLPDAAFTFDDDKEEEKEEMEDEEEDEVRRP
VSKVPRRQRLTAGLSLPLVTRIQPQHLEGRQKEDEEEEEGEEAAAVESGE
GEEEESIITDTEILAATTATRQQSPLQALRRRRAVNGDGTGSNRSDHSFG
TTSTSTSTSTRMGAPTTMPSKRPPSSSLRLPHAHPVRNSRLNSHSFHSSS
SFTSSNMPNPTPFPSSLYSSKLVSVRQKQRGRGRWWVLRWWPFPSVSSWD
MRKWVVPQDCAFKRGWDMLTVVLATVVLCSDAASLIQQHQNPPSHPSSSS
SSSPSTFLSSDNNLGDSSNPSFSSSSSSSSLDPSSLYHLLLLEAIWFLVD
LALSFRTEVEIVLDDDDAAAAAIAAGHVMGRQAGGGGGGGGAAAAAAAAA
AGESETETILLLRDPRAIAIQYLSRDFWLDLCLSFPWLAIAALLLTPKRK
KRNAMRRALGHVGRGLGGFLGKLKNGVGSKIPRFLRPDNVKRFFVWTRLL
EVKKVDGVKHVVKYRKEYRGLRMCIRGIKWLCRFPVASFIWRVHRKLEAH
LVVAVEEVWGDDREEERKAKVWRAGQSRRGGMALSPSLLMVEEEWGGYKG
EENRSFHGGEDGERGGGEAEG*
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Synonyms
Publications