NO05G00870, NO05G00870 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G00870 vs. NCBI_GenBank
Match: EWM28239.1 (endothelial monocyte-activating polypeptide ii precursor pro-emap ii family protein [Nannochloropsis gaditana]) HSP 1 Score: 307.0 bits (785), Expect = 5.800e-80 Identity = 190/361 (52.63%), Postives = 209/361 (57.89%), Query Frame = 0
Query: 1 MKWLVLACVVIMLLRSVSGFTTRTLTPSTRKMTPMASRTAHGFSR--SSSRGRAKNGGIVRVPFLNQGLAKAAHTRLFSTTED-ANP------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXEIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSGMKGSIS 269
MK +VL C ++MLLRS S FTTR L T+K + M +R A +R SS + ++ GI RVPFLNQGLA+AAHTRLFSTTED A P EIRTGKI+E+SRHPEADGLYVEKIDLGE G RTIVSGLVKYQTEE+LLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVV PLSPP GVA+GELITFEGH AAPEPPGNRAGKAFDRVA++L AGEDM+ATYKGIPFMTSKGPV +GM GSIS
Sbjct: 1 MKRIVLMCALVMLLRSASAFTTRALVSGTQK-SRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
BLAST of NO05G00870 vs. NCBI_GenBank
Match: CEL99506.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 190.3 bits (482), Expect = 7.900e-45 Identity = 93/144 (64.58%), Postives = 114/144 (79.17%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTS 256
EIR G+I+EV RHP+AD LYVEK+DLGE RTIVSGLV Y ++E+L GR V+VL NLKPRA++GI S GMLLC+S+ D T V PLSPP G A+GEL+TF+G + P PGN+AGKAFDRVA+DLS GE VAT++ +PF TS
Sbjct: 462 EIRVGRILEVERHPDADSLYVEKVDLGE-GEPRTIVSGLVPYLSQEELQGRNVIVLCNLKPRAMRGIKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRSVPFQTS 604
BLAST of NO05G00870 vs. NCBI_GenBank
Match: CBJ30030.1 (endothelial monocyte-activating polypeptide II precursor pro-EMAP II family protein [Ectocarpus siliculosus]) HSP 1 Score: 185.3 bits (469), Expect = 2.500e-43 Identity = 96/163 (58.90%), Postives = 118/163 (72.39%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDL--GEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKG----IPFMTSKGPVKSGMKGSIS 269
EIR GKIVE++RHP+AD LYVEK+DL GE G RTIVSGLV + E LLGR+VVVL NLKP +KG+TS GMLLC+SNEDH+ V PL PP GV +GEL+TF+GH+ +P GNRAGKA+ R + L+ + A + G FMTSKGP+ S + GSIS
Sbjct: 96 EIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
BLAST of NO05G00870 vs. NCBI_GenBank
Match: XP_005650266.1 (nucleic acid-binding protein [Coccomyxa subellipsoidea C-169] >EIE25722.1 nucleic acid-binding protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 161.4 bits (407), Expect = 3.900e-36 Identity = 83/152 (54.61%), Postives = 106/152 (69.74%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSGM 264
+IR G+IV+V RHP+AD LYVE+ID+GE R IVSGLV + E++LGR V+VLANLKP L+GI S GM+LCASNE H V P+ P GV VGE + FEG APEP N K ++++A +L+ + VA YK IPFMTS GP+ S +
Sbjct: 64 DIRVGQIVKVDRHPDADSLYVEEIDIGEEQ-PRQIVSGLVAFVPVEEMLGRRVLVLANLKPAKLRGILSSGMVLCASNEAHDKVEPVLVPEGVEVGERVMFEGFEGAPEPVLNPKKKLWEKIAPELTTNAEGVAVYKDIPFMTSNGPITSSL 214
BLAST of NO05G00870 vs. NCBI_GenBank
Match: GAQ85976.1 (Nucleic acid-binding OB-fold-like protein [Klebsormidium nitens]) HSP 1 Score: 155.2 bits (391), Expect = 2.800e-34 Identity = 78/156 (50.00%), Postives = 104/156 (66.67%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSGMKGSI 268
+IR G I +V++HP AD LYVE IDLGE R +VSGL K+ TEEQ+ GR+VVVLAN+KP ++ + S G++LCASNEDHT P+ PPAG VG +TF G+ PEP N K +++ DL +D VA ++ +PF TS GP S +K +I
Sbjct: 284 DIRIGVITKVAKHPNADALYVEDIDLGE-GPPRQVVSGLAKFLTEEQMHGRKVVVLANVKPGKVRDVMSSGLVLCASNEDHTQCEPIVPPAGAEVGSKVTFPGYDGEPEPVLNPKKKQLEKILPDLKTDKDGVAKFQAVPFTTSLGPCTSSLKDAI 438
BLAST of NO05G00870 vs. NCBI_GenBank
Match: KDD75141.1 (putative tRNA binding domain-containing protein [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 152.9 bits (385), Expect = 1.400e-33 Identity = 77/148 (52.03%), Postives = 102/148 (68.92%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPV 260
++R G+I +V RHP+AD LYVE IDLGE + R IVSGLVK+ EE++ GR VVV+ NLKP ++ + S+GM+LCASN+ H V P++PP G+ VGE ITFEG+ A P K F+ +A L + + TYKG+PFMTS GPV
Sbjct: 224 DLRVGRITKVERHPDADALYVETIDLGE-AEPRQIVSGLVKFVPEERMQGRMVVVVCNLKPAKMRNVMSYGMVLCASNDAHDAVDPINPPEGLQVGERITFEGYSAEPLAQLPPKKKQFEAIAPHLVTSDKGLCTYKGVPFMTSAGPV 370
BLAST of NO05G00870 vs. NCBI_GenBank
Match: OON09939.1 (tyrosine-tRNA ligase [Batrachochytrium salamandrivorans]) HSP 1 Score: 152.1 bits (383), Expect = 2.400e-33 Identity = 78/148 (52.70%), Postives = 98/148 (66.22%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPV 260
+IR G+++EV+ HPE D LYVEKIDLGE SG RTIVSGL KY T+E+ GR V+V+ANLK G+ S GM+L ASN D ++V L P VGE + FEG +AP+P N K F++ A D ED VA+YKG PF T+ G V
Sbjct: 362 DIRVGRVLEVALHPERDNLYVEKIDLGEASGPRTIVSGLAKYLTKEEFTGRLVLVVANLKASKFAGVLSEGMVLAASNADKSMVELLEPSDDSVVGEKVFFEGFTSAPDPTLNPKQKVFEKCAADFLTTEDCVASYKGTPFQTAHGEV 509
BLAST of NO05G00870 vs. NCBI_GenBank
Match: XP_006682148.1 (hypothetical protein BATDEDRAFT_20842 [Batrachochytrium dendrobatidis JAM81] >EGF77068.1 hypothetical protein BATDEDRAFT_20842 [Batrachochytrium dendrobatidis JAM81]) HSP 1 Score: 150.6 bits (379), Expect = 7.000e-33 Identity = 77/148 (52.03%), Postives = 98/148 (66.22%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPV 260
+IR GK++EV+ HPE D LYVEKIDLGE +G RTIVSGL KY T+E+ GR V+V+ANLK G+ S GM+L ASN D +VV L P +GE +TF+G +P+ N K F++ A D E+ VATYK IPF TS+G V
Sbjct: 359 DIRVGKVIEVTAHPERDNLYVEKIDLGEATGPRTIVSGLAKYLTKEEFTGRLVLVVANLKASKFAGVLSEGMVLAASNADKSVVELLEPNEDSKIGEQVTFDGFTFSPDQTLNPKHKVFEKCAVDFLTTEECVATYKNIPFKTSQGQV 506
BLAST of NO05G00870 vs. NCBI_GenBank
Match: OAJ44828.1 (tyrosine-tRNA ligase [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 150.6 bits (379), Expect = 7.000e-33 Identity = 77/148 (52.03%), Postives = 98/148 (66.22%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPV 260
+IR GK++EV+ HPE D LYVEKIDLGE +G RTIVSGL KY T+E+ GR V+V+ANLK G+ S GM+L ASN D +VV L P +GE +TF+G +P+ N K F++ A D E+ VATYK IPF TS+G V
Sbjct: 389 DIRVGKVIEVTAHPERDNLYVEKIDLGEATGPRTIVSGLAKYLTKEEFTGRLVLVVANLKASKFAGVLSEGMVLAASNADKSVVELLEPNEDSKIGEQVTFDGFTFSPDQTLNPKHKVFEKCAVDFLTTEECVATYKNIPFKTSQGQV 536
BLAST of NO05G00870 vs. NCBI_GenBank
Match: XP_024392592.1 (probable methionine--tRNA ligase [Physcomitrella patens] >PNR42043.1 hypothetical protein PHYPA_016872 [Physcomitrella patens]) HSP 1 Score: 149.8 bits (377), Expect = 1.200e-32 Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 0
Query: 112 EIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKG 258
+IR G I +V +HP+AD LYVE+ID+GE S RT+VSGLVK+ EQ+ R+V VL NLKP A++GI S M+L ASN DHTVV ++PP G AVGE +TF G+ P+ N K ++ V DL G D+VA YK +PF TS G
Sbjct: 654 DIRVGLITDVKKHPDADSLYVEQIDVGE-STPRTVVSGLVKFIPIEQMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNADHTVVELVTPPEGAAVGERVTFPGYTGEPDDVLNPKKKIWESVQPDLHTGSDLVAQYKDVPFTTSSG 798 The following BLAST results are available for this feature:
BLAST of NO05G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G00870 ID=NO05G00870|Name=NO05G00870|organism=Nannochloropsis oceanica|type=gene|length=2433bpback to top protein sequence of NO05G00870.1 >NO05G00870.1-protein ID=NO05G00870.1-protein|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bpback to top protein sequence of NO05G00870.2 >NO05G00870.2-protein ID=NO05G00870.2-protein|Name=NO05G00870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=326bpback to top protein sequence of NO05G00870.3 >NO05G00870.3-protein ID=NO05G00870.3-protein|Name=NO05G00870.3|organism=Nannochloropsis oceanica|type=polypeptide|length=269bpback to top Synonyms
Publications
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