NO05G00840, NO05G00840 (gene) Nannochloropsis oceanica

Overview
NameNO05G00840
Unique NameNO05G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1699
Alignment locationchr5:262995..264693 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:262995..264693 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO05G00840 vs. NCBI_GenBank
Match: EWM28288.1 (hypothetical protein Naga_100004g21 [Nannochloropsis gaditana])

HSP 1 Score: 255.4 bits (651), Expect = 3.200e-64
Identity = 143/314 (45.54%), Postives = 196/314 (62.42%), Query Frame = 0 
Query:  119 QDVAFPWRTAPRMHLSFLQAA-SKWLSDVFPQAFIRGLFYMSVGKLMEAPAEDLREILFRSTRFAFIQAVRGIFEGQCKTPPPAWEYTNDELNPPSSEWELGYPPLSEMMEPKLLEMYQDVVARFRANNREVRLELESIHPISMHDFKLVIGPPRGTPLPPGATKHTRGGVTVIVPQMPEGGEEMEGRGGGQEMGMGNNGQSFMAAVR-GSKNHMI-FQMAVTFKCRELFCVKDVETDEAVQGQEEMRETEHVCRFEIDFDNRAQLSQEWRLVDIDDW---MNGNVYLTGMPDDGEMSTE-RSGEGAHGRRKDD 426
            Q+VAFPWR APR   +   A+  +W + +  QA +RG F   + K ME     ++E LFR  RFAFIQ VRGIF+GQCKTP P  E++ ++  PPSS W++GYPPLS MM+  L+  Y+DV+ARF+AN REVRLELESI P++MHD+++ +GPPRG+P      KH   G+T    Q  +    M                +  A VR  S+N  I F +AVTF+CRELFCV++ +T E +QG++ +RE +HV RF+++ D +AQ++Q+WR+VDID W     G V      + GE S + R G GA  R KDD
Sbjct:  135 QEVAFPWRPAPRRPAAPRYASYGEWFTQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMT--------------DTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVE-EDEEEKGEPSGDRREGGGAQERGKDD 433
[Close]
BLAST of NO05G00840 vs. NCBI_GenBank
Match: EWM28221.1 (hypothetical protein Naga_100004g22 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 1.600e-44
Identity = 112/290 (38.62%), Postives = 149/290 (51.38%), Query Frame = 0 
Query:  123 FPWRTAPRMHLSFLQAASK----WLSDVFPQAFIRGLFYMSVGKLMEAPAEDLREILFRSTRFAFIQAVRGIFEGQCKTPPPAWEYTNDELNPPSSEWELGYPPLSEMMEPKLLEMYQDVVARFRANNREVRLELESIHPISMHDFKLVIGPPRGTPLPPGATKHTRG-----GVTVIVPQMPEGGEEMEGRGGGQEMGMGNNGQSFMAAVRGSKNHMIFQMAVTFKCRELFCVKDVETDEAVQGQEEMRETEHVCRFEIDFDNRAQLSQEWRLVDIDDWMNGNVYLTGM 404
            FPW +AP   +S      K     L        +R +    V     A   D+   L  STRFAFIQAVR IFEG CKTP P W+ T  +   PSSEWELGYPPLS MMEPKL  +Y+++V+ FRA + EVR ELESI  +S+  F+ ++G       P  ++ +        G  V VP   E  E +                            ++++MAVTF+CRELF V++  T E +QG++ M+E +HV RFE+  D   +   EW LVDIDD + GN Y   M
Sbjct:  127 FPWGSAPEAEVSAFGPQEKSMFQRLRYYLSTLVVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSVNIGALSLVFGKPVTVPSESERKEPV-------------------------PISILYRMAVTFRCRELFTVRNSGTGEVLQGEDRMKEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNEYFKDM 391
The following BLAST results are available for this feature:
BLAST of NO05G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28288.13.200e-6445.54hypothetical protein Naga_100004g21 [Nannochlorops... [more]
EWM28221.11.600e-4438.62hypothetical protein Naga_100004g22 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL084nonsL084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR122ngnoR122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003772NSK003772Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00840.1NO05G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583644gene_2874Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g21gene2284Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00840.1NO05G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00840 ID=NO05G00840|Name=NO05G00840|organism=Nannochloropsis oceanica|type=gene|length=1699bp
CAGACACAGGCGGTTAGCCATCTTCTGCTCCCCGCCGGCATATCACACCA
GCGCAGGGCAGCACTCAAAGCAAGCAAGCATGATGCGTAGCATGGCACAC
TCTGCGCGGCGAGGGCCGCTTGTCAATATGGGTTTGAGAGGTATTCGTAG
GAGCGGCAGCTGCAGCGACAAAAGCAACTGTGCCATCAGTCAGGCATTGG
GCCGCTCCGCAGCACCATCATCTCCTCCATCGCTGTGCCCCACCACCCTC
TCCGCTGCATGGAAGCAGCATCAGCACCTATTGCTCTACAATTCGCGACG
GGGCATGTCGTCTGATTCAGCCCCTCCCTCGTCGTTTGCCAATCCCAGGG
CAAGCACATCGTCACCGCAGGAGGGCGTCGCACCAGGAAGCGTAGCAGCT
GAGGAGGAAGAGAAGGAGAAGCCGCCTCCTTTCCAGGACGTGGCATTTCC
TTGGCGCACCGCCCCACGCATGCATCTCTCCTTCCTTCAAGCTGCCAGCA
AATGGCTCTCCGATGTATTTCCGCAGGCCTTCATCCGTGGACTGTTTTAC
ATGTCTGTTGGAAAGCTGATGGAGGCCCCTGCTGAAGACCTTCGTGAAAT
TCTCTTCCGGTCCACCCGCTTCGCCTTCATCCAAGCCGTCCGTGGGATCT
TTGAGGGGCAATGCAAGACCCCTCCTCCTGCGTGGGAGTATACCAACGAT
GAGCTCAACCCTCCTTCCTCCGAATGGGAATTGGGGTACCCGCCTCTGTC
TGAAATGATGGAGCCGAAGCTTTTAGAGATGTACCAAGACGTCGTTGCGC
GTTTCCGGGCCAACAATCGAGAGGTTCGGTTAGAATTGGAGAGCATCCAT
CCAATTTCAATGCATGATTTCAAGTTGGTCATTGGCCCTCCGCGGGGCAC
GCCCTTACCGCCGGGCGCGACGAAGCACACAAGGGGAGGCGTGACGGTGA
TTGTACCGCAAATGCCCGAGGGAGGGGAGGAGATGGAAGGGAGAGGAGGA
GGACAGGAGATGGGCATGGGAAACAATGGCCAGTCGTTCATGGCGGCGGT
GAGGGGGTCCAAAAACCATATGATTTTCCAGATGGCCGTGACTTTTAAGT
GCAGAGAGCTGTTCTGTGTGAAGGATGTAGAGACGGATGAGGCGGTTCAA
GGACAGGAAGAAATGCGGGAAACGGAGCATGTTTGTCGGTTTGAGATCGA
CTTTGATAATCGCGCGCAGgtaaggcatttggaggggaggatgcagagat
ctacgccgtaacagggagggagagagagggaatgaaacggaagcggtagg
gatagatggaatactgtttgggaagttcctggttgaagtgtgattctttc
tatgcacacgaatctcacgatttccccctaattttgaaatcatatgcaca
tacacttcgaacaactcacagTTGAGCCAAGAATGGCGGTTGGTGGACAT
CGACGACTGGATGAATGGGAATGTCTACCTCACCGGCATGCCCGACGATG
GAGAGATGTCAACCGAGAGAAGTGGGGAGGGTGCGCATGGTCGGCGGAAA
GATGACTGAGTCCTATCGGAAGAAGAGAAGATTATTAGAGCGGAGGGATT
GTACATTGAGGACCGAGGGTGAGAGAGAAATAGAGCGCCAAAGAAAAACC
AAGAGGGCAAAAATGTTGCAGACATATGACAAGATATAAGCTAAAAACT
back to top

protein sequence of NO05G00840.1

>NO05G00840.1-protein ID=NO05G00840.1-protein|Name=NO05G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MMRSMAHSARRGPLVNMGLRGIRRSGSCSDKSNCAISQALGRSAAPSSPP
SLCPTTLSAAWKQHQHLLLYNSRRGMSSDSAPPSSFANPRASTSSPQEGV
APGSVAAEEEEKEKPPPFQDVAFPWRTAPRMHLSFLQAASKWLSDVFPQA
FIRGLFYMSVGKLMEAPAEDLREILFRSTRFAFIQAVRGIFEGQCKTPPP
AWEYTNDELNPPSSEWELGYPPLSEMMEPKLLEMYQDVVARFRANNREVR
LELESIHPISMHDFKLVIGPPRGTPLPPGATKHTRGGVTVIVPQMPEGGE
EMEGRGGGQEMGMGNNGQSFMAAVRGSKNHMIFQMAVTFKCRELFCVKDV
ETDEAVQGQEEMRETEHVCRFEIDFDNRAQLSQEWRLVDIDDWMNGNVYL
TGMPDDGEMSTERSGEGAHGRRKDD*
back to top
Synonyms
Publications