NO05G00820, NO05G00820 (gene) Nannochloropsis oceanica

Overview
NameNO05G00820
Unique NameNO05G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length955
Alignment locationchr5:259671..260625 +

Link to JBrowse

Properties
Property NameValue
Descriptionzinc knuckle (CCHC-type) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:259671..260625 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0048478replication fork protection
GO:0007049cell cycle
GO:0006974cellular response to DNA damage stimulus
GO:0048478replication fork protection
GO:0006974cellular response to DNA damage stimulus
GO:0000076DNA replication checkpoint
Vocabulary: INTERPRO
TermDefinition
IPR012923Csm3
Homology
BLAST of NO05G00820 vs. NCBI_GenBank
Match: CBJ29350.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 2.600e-16
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 0
Query:   88 PRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLREKERERYLATNFGHDYEDKM--VEYRREKAKEE--ARLDADRARRREE 213
            P F+EN ++   G+ ++Y  F   C ++G G EAE L  L+  YKEW YQL+P +AFEDL  R +KL G+AR R  L  LR+ ER+R L   +G +  D +   E  R  AKE   A  + DR   RE+
Sbjct:   63 PAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEERED 191          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: KFV69921.1 (TIMELESS-interacting protein, partial [Picoides pubescens])

HSP 1 Score: 72.4 bits (176), Expect = 2.300e-9
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   85 KHRPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLR 169
            +H P+   + +I   G+  +   F ++  F+G GHEAEDL  L+R  + WA++LFP L FED +DR++ L  K  V+ CL+ +R
Sbjct:   69 RHMPKLDASRLISERGLPALRHMFDNV-KFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVEMLGNKKEVQTCLKRIR 151          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_009902241.1 (PREDICTED: TIMELESS-interacting protein [Picoides pubescens])

HSP 1 Score: 72.4 bits (176), Expect = 2.300e-9
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   85 KHRPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLR 169
            +H P+   + +I   G+  +   F ++  F+G GHEAEDL  L+R  + WA++LFP L FED +DR++ L  K  V+ CL+ +R
Sbjct:   67 RHMPKLDASRLISERGLPALRHMFDNV-KFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVEMLGNKKEVQTCLKRIR 149          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_024579744.1 (timeless-interacting protein isoform x3 [Plasmopara halstedii] >CEG43375.1 timeless-interacting protein isoform x3 [Plasmopara halstedii])

HSP 1 Score: 72.0 bits (175), Expect = 3.000e-9
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 0
Query:   85 KHRPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLREKERERYLATNFGHDYEDKMVEYRREKA 197
            + R    E+ +I   G ++V+ TF        +G EA+ L  L++ YK+WA+ L+P L FED V+R + L    +V+  +  LREKER +YL T    D +D+  +   E+A
Sbjct:   48 RQRNLLRESHLISAEGFQKVHRTFPYQVSADVSGREAQALASLVKMYKQWAFDLYPGLNFEDFVERTETLGKGRQVQALMMELREKERLKYLKTIIDQDEKDEKADSEGEEA 159          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_002518811.1 (PREDICTED: TIMELESS-interacting protein [Ricinus communis] >EEF43736.1 nucleic acid binding protein, putative [Ricinus communis])

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-9
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   85 KHRPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLREK 171
            + RP+ T + ++G +G+  V   F     +RG GHE  DL  L+R Y EW  +L PY ++++ V ++++++   RVR CL  LRE+
Sbjct:   66 RSRPKLTPDILLGDDGLGYVLRHFPRNFKYRGRGHEVSDLGNLIRLYSEWHSRLLPYYSYDEFVHKVEQVASTKRVRVCLRDLRER 151          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_008401347.1 (PREDICTED: TIMELESS-interacting protein [Poecilia reticulata])

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-9
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   87 RPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLR 169
            +P+     +I   G+  +   FS+   F+G GHEAEDL  L++  + WA++LFP L FED +DR++KL  K  V+ CL+ +R
Sbjct:   65 QPKLDSQRLISDRGLPALRTLFSN-ARFKGKGHEAEDLRLLMQKMENWAHRLFPKLQFEDFIDRVEKLGSKKEVQTCLKRIR 145          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_002199204.3 (PREDICTED: TIMELESS-interacting protein-like [Taeniopygia guttata])

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-9
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   87 RPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLR 169
            RPR     +I   GI  +   F ++  F+G GHEAEDL  L++  + WA++LFP L FED +DR++ L  K  V+ CL+ +R
Sbjct:   69 RPRLDAQRLISERGIPALRHMFDNV-KFKGKGHEAEDLKTLIQHMEHWAHRLFPQLRFEDFIDRVESLGNKKEVQTCLKRIR 149          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_012433279.1 (PREDICTED: TIMELESS-interacting protein [Taeniopygia guttata])

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-9
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   87 RPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLR 169
            RPR     +I   GI  +   F ++  F+G GHEAEDL  L++  + WA++LFP L FED +DR++ L  K  V+ CL+ +R
Sbjct:   69 RPRLDAQRLISERGIPALRHMFDNV-KFKGKGHEAEDLKTLIQHMEHWAHRLFPQLRFEDFIDRVESLGNKKEVQTCLKRIR 149          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_021408266.1 (TIMELESS-interacting protein isoform X1 [Lonchura striata domestica] >XP_021408267.1 TIMELESS-interacting protein isoform X1 [Lonchura striata domestica])

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-9
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 0
Query:   85 KHRPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLR 169
            + RP+     +I   GI  +   F ++  F+G GHEAEDL  L++  + WA++LFP L FED VDR++ L  K  V+ CL+ +R
Sbjct:   67 RQRPKLDAQRLISERGIPALRHMFDNV-KFKGKGHEAEDLKTLIQHMEHWAHRLFPQLRFEDFVDRVESLGNKKEVQTCLKRIR 149          
BLAST of NO05G00820 vs. NCBI_GenBank
Match: XP_016193124.1 (TIMELESS-interacting protein [Arachis ipaensis])

HSP 1 Score: 71.2 bits (173), Expect = 5.200e-9
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   85 KHRPRFTENDVIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDRMQKLSGKARVRQCLEGLREK 171
            + RP+ T + ++  +G+  V   F     +RG GHE +DL  LLR Y EW  +L PY +F++ V +++K++   RV+ CL  LRE+
Sbjct:   74 RSRPKLTPDLLLSDDGLGYVLRYFPREFKYRGRGHEVQDLGNLLRMYTEWHSRLIPYYSFDEFVLKVEKVAATKRVKMCLRDLRER 159          
The following BLAST results are available for this feature:
BLAST of NO05G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29350.12.600e-1641.86conserved unknown protein [Ectocarpus siliculosus][more]
KFV69921.12.300e-939.29TIMELESS-interacting protein, partial [Picoides pu... [more]
XP_009902241.12.300e-939.29PREDICTED: TIMELESS-interacting protein [Picoides ... [more]
XP_024579744.13.000e-934.82timeless-interacting protein isoform x3 [Plasmopar... [more]
XP_002518811.14.000e-936.05PREDICTED: TIMELESS-interacting protein [Ricinus c... [more]
XP_008401347.14.000e-940.24PREDICTED: TIMELESS-interacting protein [Poecilia ... [more]
XP_002199204.34.000e-941.46PREDICTED: TIMELESS-interacting protein-like [Taen... [more]
XP_012433279.14.000e-941.46PREDICTED: TIMELESS-interacting protein [Taeniopyg... [more]
XP_021408266.14.000e-940.48TIMELESS-interacting protein isoform X1 [Lonchura ... [more]
XP_016193124.15.200e-937.21TIMELESS-interacting protein [Arachis ipaensis][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003792NSK003792Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00820.1NO05G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526065gene_2872Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00820.1NO05G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00820 ID=NO05G00820|Name=NO05G00820|organism=Nannochloropsis oceanica|type=gene|length=955bp
ATGGCACGATTGGACGACAACCTGTACAGCGACGAGTCCGATGAGGAGGC
CGTGCGCCCCCACACCGGGGCTGGACCGCGCGGGCGGACAAGTGTCGAGT
CGGACAAGGGAGGGGATGGCCGAGATGGAGACATGGACCAAGAGGATGGA
AGCAAGGTCGATGAGGAGGATGAAGACAAGGCCTTGTCGTCGCTTGCGGA
CGAGGCGGCGGCTGATGCAGCAGCCGCGGCAGCGGCAGGGGGAAAGCCTA
AGAAACACCGGCCTCGGTTCACGGAGAATGATGTGATAGGGTTTAACGGC
ATTGAGCGTGTGTATGCGACTTTCTCGAGTTTATGTCCTTTTCGAGGGGC
GGGCCACGAGGCGGAGGACTTGCATCGGTTGCTGCGTTGTTACAAGGAGT
GGGCGTATCAGTTGTTCCCGTATTTGGCGTTTGAGGACTTGGTGGACAGG
ATGCAGAAGTTGAGTGGCAAGGCGAGGGTGAGGCAATGCTTGGAAGGGCT
GAGGGAGAAGGAGAGGGAACGGTACTTGgtacgtttttagaggataagag
agggagggatgcatggtagatggctgttgtttgttgctcagtctcttggc
gatttgttgtgtctgtccgtcttcgggcgtacgtcctcctcacggcacct
ccctccctccgtccctccgtccctcccttcccccctttccttttcaaaat
cagGCGACTAATTTCGGACACGACTACGAGGATAAAATGGTGGAGTACAG
ACGCGAGAAGGCCAAGGAGGAAGCACGGCTGGATGCCGACCGGGCCCGAC
GGCGGGAGGAGCTGTATGGGCGGGCGAGGAAGGAGGGAGGGGGGAGGGTG
GGGGGGAGGTTGAGGTGGAGGATTTGGGGGCAGTGGAGGACATGGAAGAG
AAGGAGAGGGAGAGGAAGGAAAGGAGGGAGAGGGTGGCGGCGGAGCTTGC
AGTGA
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protein sequence of NO05G00820.1

>NO05G00820.1-protein ID=NO05G00820.1-protein|Name=NO05G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MARLDDNLYSDESDEEAVRPHTGAGPRGRTSVESDKGGDGRDGDMDQEDG
SKVDEEDEDKALSSLADEAAADAAAAAAAGGKPKKHRPRFTENDVIGFNG
IERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAFEDLVDR
MQKLSGKARVRQCLEGLREKERERYLATNFGHDYEDKMVEYRREKAKEEA
RLDADRARRREELYGRARKEGGGRVGGRLRWRIWGQWRTWKRRRGRGRKG
GRGWRRSLQ*
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Synonyms
Publications