Properties
Property Name Value
Description Pentatricopeptide repeat containing protein
Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr5 genome chr5:255883..259265 -
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
Vocabulary: INTERPRO
Term Definition
IPR011990 TPR-like_helical_dom
IPR002885 Pentatricopeptide_repeat
Homology
BLAST of NO05G00810 vs. NCBI_GenBank
Match:
XP_005854388.1 (hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana CCMP526] >EKU21971.1 hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 224.2 bits (570), Expect = 2.000e-54
Identity = 106/132 (80.30%), Postives = 121/132 (91.67%), Query Frame = 0
Query: 912 IEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLLTCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWKEMATVFGEAQARFQKGQLPPREFSRVEATFREKGGYFMREGEE 1044
+E RRAKRVLQ+YDTMRRSAG G GLE+ PDEATYTVLLTCLL FPK L EVYKL+L+DWR+LVP RNRSDRNYQSFI++LAA+GDW+EMATVF EAQARFQKGQL PRE+S+VEATFREKGGY++R+GEE
Sbjct: 333 VEERRAKRVLQVYDTMRRSAGKGGGLEKAPDEATYTVLLTCLLRFPKRLTKEVYKLILEDWRRLVPTRNRSDRNYQSFITVLAAMGDWEEMATVFREAQARFQKGQLSPREYSKVEATFREKGGYYVRDGEE 464
BLAST of NO05G00810 vs. NCBI_GenBank
Match:
EWM28220.1 (pentatricopeptide repeat containing protein [Nannochloropsis gaditana])
HSP 1 Score: 203.8 bits (517), Expect = 2.700e-48
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0
Query: 912 IEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLLTCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWKEMATVFGEAQARFQKGQLPPREFSRVEATFR 1032
+E RRAKRVLQ+YDTMRRSAG G GLE+ PDEATYTVLLTCLL FPK L EVYKL+L+DWR+LVP RNRSDRNYQSFI++LAA+GDW+EMATVF EAQARFQKGQL PRE+S+VEATFR
Sbjct: 845 VEERRAKRVLQVYDTMRRSAGKGGGLEKAPDEATYTVLLTCLLRFPKRLTKEVYKLILEDWRRLVPTRNRSDRNYQSFITILAAMGDWEEMATVFREAQARFQKGQLSPREYSKVEATFR 964
BLAST of NO05G00810 vs. NCBI_GenBank
Match:
XP_005854389.1 (putative udp-glucosyltransferase, partial [Nannochloropsis gaditana CCMP526] >EKU21972.1 putative udp-glucosyltransferase, partial [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 161.4 bits (407), Expect = 1.600e-35
Identity = 93/160 (58.13%), Postives = 109/160 (68.12%), Query Frame = 0
Query: 82 RLHFLHPQSPPSYAPAASRSFTAPAYRTYRIKPLCPAASGNDDSSSTID------ITTATAAPPSPASLPPRKVALVRTKQKEGRASFGRIIPFTRGAITRQKQASPRADPGRPAEDEERRAVCEMSPDLPTFHTVMKAYAEERDPEGAEMVLGWLMTRG 236
R HFL PP AP R P+ RT + PAA+ DD++ + I PP+P+S P ALVR+ +EGRAS GRIIPFTRGAI R KQASPR++P RPAEDEERRAVC++SPDLPTFHTVMK YA+ERDPEGAEMVLGWL+ RG
Sbjct: 86 RFHFL---PPPRRAP--GRLLAIPSPRTSFV--ALPAATPEDDNAPKVSVGINSGIAATNLIPPAPSSSPKEAKALVRS-PREGRASVGRIIPFTRGAIMRHKQASPRSNPSRPAEDEERRAVCDLSPDLPTFHTVMKVYADERDPEGAEMVLGWLLARG 237
The following BLAST results are available for this feature:
BLAST of NO05G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (
BLASTP analysis of N. oceanica IMET1 genes )
Total hits: 3
500 1000 1500 2000 2500 3000 Expect = 2.00e-54 / Id = 80.30 Expect = 2.70e-48 / Id = 80.83 Expect = 1.60e-35 / Id = 58.13 Sequence XP_005854388.1 EWM28220.1 XP_005854389.1
Match Name E-value Identity Description
XP_005854388.1 2.000e-54 80.30 hypothetical protein NGA_2006000, partial [Nannoch... [more]
EWM28220.1 2.700e-48 80.83 pentatricopeptide repeat containing protein [Nanno... [more]
XP_005854389.1 1.600e-35 58.13 putative udp-glucosyltransferase, partial [Nannoch... [more]
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Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence
>NO05G00810 ID=NO05G00810|Name=NO05G00810|organism=Nannochloropsis oceanica|type=gene|length=3383bp ATAGGCAGCATCATCATCAGCAGCATCATGGCCATGGCCGGCAGCAACAG CCACAAGCGGGCCCGCCCGTCATCATCCTTTTCCAATCTCGTAAACACCA CGCTGCCAAATGACGACAGCAGGAGCAGCAGGATAGCCTTCCCTGTATCA ACTTCCGACAGTATCAGCAGCAGTACACCGATATTTGTAGCGCGCAAGAC GCTGCTAGGTGTGGTGGTGCTGGTGACGAGTGTGGTGGCTGCATCCTCCA AAAGAGCAAGTCCATCAGGCAGGCTCCACTTCCTCCACCCTCAATCCCCC CCTTCATATGCTCCCGCTGCATCACGGTCTTTTACAGCCCCAGCATACCG GACATACCGCATCAAACCTCTCTGCCCAGCTGCGTCAGGCAACGACGACA GCAGCAGCACCATTGACATCACCACTGCTACTGCCGCACCTCCCTCCCCA GCCTCACTCCCTCCCCGCAAAGTAGCACTTGTCCGGACTAAACAAAAAGA AGGCCGTGCCTCCTTTGGGCGCATCATCCCTTTTACCCGTGGAGCGATCA CCCGTCAAAAACAAGCCAGTCCCCGCGCTGATCCAGGACGTCCCGCCGAG GACGAAGAACGACGGGCGGTGTGCGAAATGTCGCCTGATCTCCCCACGTT CCACACGGTGATGAAGGCATATGCGGAGGAGAGGGATCCGGAAGGGGCCG AGATGGTGTTGGGGTGGTTAATGACACGGGGGTTGCTGCCGGACGTGGTG ACATACACGACTCTGATGCATGCGTATGCAGGAAGGGGGGACGCGAGGGG GGCCGAGGAAGTGATGACGAGGATGACAGGGAGCGAGCGGCTTGGGAAGG ACGAGGCGGTGGTGCCGAATGTGATGACGTACACGACGTTGATGAGCGCG TATGCGGCGGGGGGCGATGTTGAACGGAGTGAGGAGGTGTTGGAGCGGAT GGAAGAGGCATGTGTTGCCCCCAACGTGATGACGTTCACAACCCTCATGA CCGCTTATACGTTACGAGGTGACGCCCTCGGAGCGGAAGAAGTGCTTAAA AGAATGTTATCGGCCTTTGTCGCGCCCAATGCCAACACGTATACGACGTT GTTGCATGCGTACACCGTGAATGGGGATGCGGCGGGGGCTGAGAAGGTGC TGGCGAGAATGATTGCTGCTGACGTGGCTCCAACGAGCATGACTTACGCC ACATTAATGACAGTGTATGCGGCCAAGGGTGAGGTGGATGCCGCGGAAGG GGTATTGATCAGGATGGAGGCGGCGGGTGTGGAGAGCACTGCTATGGCGT ACGATACACTTCTGAATGCGTATGCGGTCCGAAAGGACGTGCAAGGCGCG GAGATGGTCTTGACCCGGAGAGAGGCGAGGGGCTTTCACCCTTTCCCTCT GACGTACAACACCTTGATGAATGCGTATGCGGAGGAGGGGGATGTGAAGG GGGCGGAGGAAGTATTGAGGCGGATGGGGGAGGAGGGGGTGCGGCCCGAT GGAACGACGTTGTCTACCCTCCTGCATGCTTACGCCGAGGCCGGAGACCC CTTGGGAGCTGAGGCGGTGCTGCTTCGGGCGCAGGGCAAGGGCGGCGGGA GGGAGGGGGAGTTTGAGGGGGTGGATCTAACGGTGTTGATGTACAACACT TTGATCAGCGCGTATGCAGCGCGGAGGGATATAAAGGGTGCTGAGCAGGT GCTTGCCCGCTTGCTCGAGAAAAACAGCGATGACGACGGGGAGGAGGAGG GAAAGGGGCAGCAGCAAGAGCAGGAGAAGAAGGTGAAGAATAAACTCAAG CCCAATTCCATCACGTACAATGCGCTTTTGACGGCATATACGAACGCTGG TGATATGCCTGGTGCCCAGCAAGTGCTCAAGCGGATGATCGGGCAAGGCC TGGCACCGGACACATTCACTTTCAACACCTTGATTGGTGCCTTTGTGGCA CGTCGGGACGTGCGTGCGGCAGAGAAGATGGTGAACTACATGGTGGAGCA CGGGGTTTTGGCGGATGTGGTTACGTACAGTCAGTTGCTCGACGGGTACG CCACGAAGGTCAATGACATGGAATCCGCCGAGGGAGTGTTGGAGAGGATG GAGGCGGAGGGGGTGAGGCCGAATCTGTACACCTACAATTATCTTATCGA GGGATATGTGAAAGCTGGGGAGATGGAGGTGGCGGAAGGGGTGCTTGGGC GAATGAGGTCTGGAGGGCTGAAGCCGACGAGCATGAATTACTGTGTGTTG ATGGATGCGTACACGCGACGGAGGGACACGAGGGGGGCGGAGAGGATTCT GGAGAAAATGAGGGGGGACAGGGTCAAGCCCAACGTGCAGGTATTCACGA CGCTGATGAATGCATACGCCAAGAGGGGGGACGTGGAGGGGGCGGAGGGG GTGTTGGCGCGGATGGTGGCCGGGGGGGGTGGGGAGGCACGGGAGGGAGG GAGGGAAGGAGGGGGAAGCGTGAATGTGTGTGAACCGAATGTGCACACAT GGAGTACCTTGATGAATGTCTATGCCCGTGCAGGTCTCACCAATGGAGCG GAAGGCGTGTTGGCGCGAATGACGGCTGCGGGGCTGAACCCTAATGTAGT GACTTTCACGACGCTCATGACTGCGTATAGCCGGGCGGGGGACCCGGATG GCGCCGAGCTAGTCTTGAAAAGGATGGAGGCGGCAGGGGCATCACCGAAT GTCTTGACCTACAACACATTGTTGTCGGCGACGTCGCGGATGGGGTTGAG GGAGGGGGAGATAGAGGGGAGGAGGGCTAAGCGGGTGCTGCAGATCTACG ACACCATGCGTCGGAGCGCAGGGACGGGCCAAGGACTAGAACGAACGCCA GACGAAGCTACCTACACCGTGCTTTTGACCTGCTTGCTCAATTTTCCAAA AGCTTTAGCGCTGGAAGTGTATAAACTCGTCCTGCAGGACTGGCGGAAGT TGGTTCCTGTTCGAAATCGCTCCGACAGAAATTACCAAAGTTTTATTAGT TTGCTAGCTGCCGTTGGGGATTGGAAAGAAATGGCGACGGTGTTTGGGGA GGCGCAGGCCAGGTTTCAGAAGGGGCAGTTGCCTCCGCGGGAGTTTTCGA GGGTGGAGGCGACGTTTCGGGAAAAAGGGGGGTATTTTATGAGGGAGGGG GAGGAAGAAGGGAAGAAGGGGGGCGGCGGTACGGAGGGTGCTGGAGGGGA AATGAGGAGAGAGTCGTAAGGGAGGTGGCTGGAACGATATTGGCTTCAAG GTTGTTGTAAAGATGGAAAGGAGGAGACGTTAGGAGAAAGGATTGTTCAT TGGGAGTATATAGTTCCTTTGGAGATGAATCAAGAGCTTTTTTGTCGAAA TAGTGCCAGAGCACAAAGAAAGAACAGTTATCG back to top protein sequence of NO05G00810.1
>NO05G00810.1-protein ID=NO05G00810.1-protein|Name=NO05G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1064bp MAMAGSNSHKRARPSSSFSNLVNTTLPNDDSRSSRIAFPVSTSDSISSST PIFVARKTLLGVVVLVTSVVAASSKRASPSGRLHFLHPQSPPSYAPAASR SFTAPAYRTYRIKPLCPAASGNDDSSSTIDITTATAAPPSPASLPPRKVA LVRTKQKEGRASFGRIIPFTRGAITRQKQASPRADPGRPAEDEERRAVCE MSPDLPTFHTVMKAYAEERDPEGAEMVLGWLMTRGLLPDVVTYTTLMHAY AGRGDARGAEEVMTRMTGSERLGKDEAVVPNVMTYTTLMSAYAAGGDVER SEEVLERMEEACVAPNVMTFTTLMTAYTLRGDALGAEEVLKRMLSAFVAP NANTYTTLLHAYTVNGDAAGAEKVLARMIAADVAPTSMTYATLMTVYAAK GEVDAAEGVLIRMEAAGVESTAMAYDTLLNAYAVRKDVQGAEMVLTRREA RGFHPFPLTYNTLMNAYAEEGDVKGAEEVLRRMGEEGVRPDGTTLSTLLH AYAEAGDPLGAEAVLLRAQGKGGGREGEFEGVDLTVLMYNTLISAYAARR DIKGAEQVLARLLEKNSDDDGEEEGKGQQQEQEKKVKNKLKPNSITYNAL LTAYTNAGDMPGAQQVLKRMIGQGLAPDTFTFNTLIGAFVARRDVRAAEK MVNYMVEHGVLADVVTYSQLLDGYATKVNDMESAEGVLERMEAEGVRPNL YTYNYLIEGYVKAGEMEVAEGVLGRMRSGGLKPTSMNYCVLMDAYTRRRD TRGAERILEKMRGDRVKPNVQVFTTLMNAYAKRGDVEGAEGVLARMVAGG GGEAREGGREGGGSVNVCEPNVHTWSTLMNVYARAGLTNGAEGVLARMTA AGLNPNVVTFTTLMTAYSRAGDPDGAELVLKRMEAAGASPNVLTYNTLLS ATSRMGLREGEIEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLL TCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWK EMATVFGEAQARFQKGQLPPREFSRVEATFREKGGYFMREGEEEGKKGGG GTEGAGGEMRRES* back to top