NO05G00810, NO05G00810 (gene) Nannochloropsis oceanica

Overview
NameNO05G00810
Unique NameNO05G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3383
Alignment locationchr5:255883..259265 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:255883..259265 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO05G00810 vs. NCBI_GenBank
Match: XP_005854388.1 (hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana CCMP526] >EKU21971.1 hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.2 bits (570), Expect = 2.000e-54
Identity = 106/132 (80.30%), Postives = 121/132 (91.67%), Query Frame = 0 
Query:  912 IEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLLTCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWKEMATVFGEAQARFQKGQLPPREFSRVEATFREKGGYFMREGEE 1044
            +E RRAKRVLQ+YDTMRRSAG G GLE+ PDEATYTVLLTCLL FPK L  EVYKL+L+DWR+LVP RNRSDRNYQSFI++LAA+GDW+EMATVF EAQARFQKGQL PRE+S+VEATFREKGGY++R+GEE
Sbjct:  333 VEERRAKRVLQVYDTMRRSAGKGGGLEKAPDEATYTVLLTCLLRFPKRLTKEVYKLILEDWRRLVPTRNRSDRNYQSFITVLAAMGDWEEMATVFREAQARFQKGQLSPREYSKVEATFREKGGYYVRDGEE 464
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BLAST of NO05G00810 vs. NCBI_GenBank
Match: EWM28220.1 (pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 2.700e-48
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0 
Query:  912 IEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLLTCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWKEMATVFGEAQARFQKGQLPPREFSRVEATFR 1032
            +E RRAKRVLQ+YDTMRRSAG G GLE+ PDEATYTVLLTCLL FPK L  EVYKL+L+DWR+LVP RNRSDRNYQSFI++LAA+GDW+EMATVF EAQARFQKGQL PRE+S+VEATFR
Sbjct:  845 VEERRAKRVLQVYDTMRRSAGKGGGLEKAPDEATYTVLLTCLLRFPKRLTKEVYKLILEDWRRLVPTRNRSDRNYQSFITILAAMGDWEEMATVFREAQARFQKGQLSPREYSKVEATFR 964
[Close]
BLAST of NO05G00810 vs. NCBI_GenBank
Match: XP_005854389.1 (putative udp-glucosyltransferase, partial [Nannochloropsis gaditana CCMP526] >EKU21972.1 putative udp-glucosyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 161.4 bits (407), Expect = 1.600e-35
Identity = 93/160 (58.13%), Postives = 109/160 (68.12%), Query Frame = 0 
Query:   82 RLHFLHPQSPPSYAPAASRSFTAPAYRTYRIKPLCPAASGNDDSSSTID------ITTATAAPPSPASLPPRKVALVRTKQKEGRASFGRIIPFTRGAITRQKQASPRADPGRPAEDEERRAVCEMSPDLPTFHTVMKAYAEERDPEGAEMVLGWLMTRG 236
            R HFL    PP  AP   R    P+ RT  +    PAA+  DD++  +       I      PP+P+S P    ALVR+  +EGRAS GRIIPFTRGAI R KQASPR++P RPAEDEERRAVC++SPDLPTFHTVMK YA+ERDPEGAEMVLGWL+ RG
Sbjct:   86 RFHFL---PPPRRAP--GRLLAIPSPRTSFV--ALPAATPEDDNAPKVSVGINSGIAATNLIPPAPSSSPKEAKALVRS-PREGRASVGRIIPFTRGAIMRHKQASPRSNPSRPAEDEERRAVCDLSPDLPTFHTVMKVYADERDPEGAEMVLGWLLARG 237
The following BLAST results are available for this feature:
BLAST of NO05G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854388.12.000e-5480.30hypothetical protein NGA_2006000, partial [Nannoch... [more]
EWM28220.12.700e-4880.83pentatricopeptide repeat containing protein [Nanno... [more]
XP_005854389.11.600e-3558.13putative udp-glucosyltransferase, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003793NSK003793Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00810.1NO05G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00810.1NO05G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00810 ID=NO05G00810|Name=NO05G00810|organism=Nannochloropsis oceanica|type=gene|length=3383bp
ATAGGCAGCATCATCATCAGCAGCATCATGGCCATGGCCGGCAGCAACAG
CCACAAGCGGGCCCGCCCGTCATCATCCTTTTCCAATCTCGTAAACACCA
CGCTGCCAAATGACGACAGCAGGAGCAGCAGGATAGCCTTCCCTGTATCA
ACTTCCGACAGTATCAGCAGCAGTACACCGATATTTGTAGCGCGCAAGAC
GCTGCTAGGTGTGGTGGTGCTGGTGACGAGTGTGGTGGCTGCATCCTCCA
AAAGAGCAAGTCCATCAGGCAGGCTCCACTTCCTCCACCCTCAATCCCCC
CCTTCATATGCTCCCGCTGCATCACGGTCTTTTACAGCCCCAGCATACCG
GACATACCGCATCAAACCTCTCTGCCCAGCTGCGTCAGGCAACGACGACA
GCAGCAGCACCATTGACATCACCACTGCTACTGCCGCACCTCCCTCCCCA
GCCTCACTCCCTCCCCGCAAAGTAGCACTTGTCCGGACTAAACAAAAAGA
AGGCCGTGCCTCCTTTGGGCGCATCATCCCTTTTACCCGTGGAGCGATCA
CCCGTCAAAAACAAGCCAGTCCCCGCGCTGATCCAGGACGTCCCGCCGAG
GACGAAGAACGACGGGCGGTGTGCGAAATGTCGCCTGATCTCCCCACGTT
CCACACGGTGATGAAGGCATATGCGGAGGAGAGGGATCCGGAAGGGGCCG
AGATGGTGTTGGGGTGGTTAATGACACGGGGGTTGCTGCCGGACGTGGTG
ACATACACGACTCTGATGCATGCGTATGCAGGAAGGGGGGACGCGAGGGG
GGCCGAGGAAGTGATGACGAGGATGACAGGGAGCGAGCGGCTTGGGAAGG
ACGAGGCGGTGGTGCCGAATGTGATGACGTACACGACGTTGATGAGCGCG
TATGCGGCGGGGGGCGATGTTGAACGGAGTGAGGAGGTGTTGGAGCGGAT
GGAAGAGGCATGTGTTGCCCCCAACGTGATGACGTTCACAACCCTCATGA
CCGCTTATACGTTACGAGGTGACGCCCTCGGAGCGGAAGAAGTGCTTAAA
AGAATGTTATCGGCCTTTGTCGCGCCCAATGCCAACACGTATACGACGTT
GTTGCATGCGTACACCGTGAATGGGGATGCGGCGGGGGCTGAGAAGGTGC
TGGCGAGAATGATTGCTGCTGACGTGGCTCCAACGAGCATGACTTACGCC
ACATTAATGACAGTGTATGCGGCCAAGGGTGAGGTGGATGCCGCGGAAGG
GGTATTGATCAGGATGGAGGCGGCGGGTGTGGAGAGCACTGCTATGGCGT
ACGATACACTTCTGAATGCGTATGCGGTCCGAAAGGACGTGCAAGGCGCG
GAGATGGTCTTGACCCGGAGAGAGGCGAGGGGCTTTCACCCTTTCCCTCT
GACGTACAACACCTTGATGAATGCGTATGCGGAGGAGGGGGATGTGAAGG
GGGCGGAGGAAGTATTGAGGCGGATGGGGGAGGAGGGGGTGCGGCCCGAT
GGAACGACGTTGTCTACCCTCCTGCATGCTTACGCCGAGGCCGGAGACCC
CTTGGGAGCTGAGGCGGTGCTGCTTCGGGCGCAGGGCAAGGGCGGCGGGA
GGGAGGGGGAGTTTGAGGGGGTGGATCTAACGGTGTTGATGTACAACACT
TTGATCAGCGCGTATGCAGCGCGGAGGGATATAAAGGGTGCTGAGCAGGT
GCTTGCCCGCTTGCTCGAGAAAAACAGCGATGACGACGGGGAGGAGGAGG
GAAAGGGGCAGCAGCAAGAGCAGGAGAAGAAGGTGAAGAATAAACTCAAG
CCCAATTCCATCACGTACAATGCGCTTTTGACGGCATATACGAACGCTGG
TGATATGCCTGGTGCCCAGCAAGTGCTCAAGCGGATGATCGGGCAAGGCC
TGGCACCGGACACATTCACTTTCAACACCTTGATTGGTGCCTTTGTGGCA
CGTCGGGACGTGCGTGCGGCAGAGAAGATGGTGAACTACATGGTGGAGCA
CGGGGTTTTGGCGGATGTGGTTACGTACAGTCAGTTGCTCGACGGGTACG
CCACGAAGGTCAATGACATGGAATCCGCCGAGGGAGTGTTGGAGAGGATG
GAGGCGGAGGGGGTGAGGCCGAATCTGTACACCTACAATTATCTTATCGA
GGGATATGTGAAAGCTGGGGAGATGGAGGTGGCGGAAGGGGTGCTTGGGC
GAATGAGGTCTGGAGGGCTGAAGCCGACGAGCATGAATTACTGTGTGTTG
ATGGATGCGTACACGCGACGGAGGGACACGAGGGGGGCGGAGAGGATTCT
GGAGAAAATGAGGGGGGACAGGGTCAAGCCCAACGTGCAGGTATTCACGA
CGCTGATGAATGCATACGCCAAGAGGGGGGACGTGGAGGGGGCGGAGGGG
GTGTTGGCGCGGATGGTGGCCGGGGGGGGTGGGGAGGCACGGGAGGGAGG
GAGGGAAGGAGGGGGAAGCGTGAATGTGTGTGAACCGAATGTGCACACAT
GGAGTACCTTGATGAATGTCTATGCCCGTGCAGGTCTCACCAATGGAGCG
GAAGGCGTGTTGGCGCGAATGACGGCTGCGGGGCTGAACCCTAATGTAGT
GACTTTCACGACGCTCATGACTGCGTATAGCCGGGCGGGGGACCCGGATG
GCGCCGAGCTAGTCTTGAAAAGGATGGAGGCGGCAGGGGCATCACCGAAT
GTCTTGACCTACAACACATTGTTGTCGGCGACGTCGCGGATGGGGTTGAG
GGAGGGGGAGATAGAGGGGAGGAGGGCTAAGCGGGTGCTGCAGATCTACG
ACACCATGCGTCGGAGCGCAGGGACGGGCCAAGGACTAGAACGAACGCCA
GACGAAGCTACCTACACCGTGCTTTTGACCTGCTTGCTCAATTTTCCAAA
AGCTTTAGCGCTGGAAGTGTATAAACTCGTCCTGCAGGACTGGCGGAAGT
TGGTTCCTGTTCGAAATCGCTCCGACAGAAATTACCAAAGTTTTATTAGT
TTGCTAGCTGCCGTTGGGGATTGGAAAGAAATGGCGACGGTGTTTGGGGA
GGCGCAGGCCAGGTTTCAGAAGGGGCAGTTGCCTCCGCGGGAGTTTTCGA
GGGTGGAGGCGACGTTTCGGGAAAAAGGGGGGTATTTTATGAGGGAGGGG
GAGGAAGAAGGGAAGAAGGGGGGCGGCGGTACGGAGGGTGCTGGAGGGGA
AATGAGGAGAGAGTCGTAAGGGAGGTGGCTGGAACGATATTGGCTTCAAG
GTTGTTGTAAAGATGGAAAGGAGGAGACGTTAGGAGAAAGGATTGTTCAT
TGGGAGTATATAGTTCCTTTGGAGATGAATCAAGAGCTTTTTTGTCGAAA
TAGTGCCAGAGCACAAAGAAAGAACAGTTATCG
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protein sequence of NO05G00810.1

>NO05G00810.1-protein ID=NO05G00810.1-protein|Name=NO05G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1064bp
MAMAGSNSHKRARPSSSFSNLVNTTLPNDDSRSSRIAFPVSTSDSISSST
PIFVARKTLLGVVVLVTSVVAASSKRASPSGRLHFLHPQSPPSYAPAASR
SFTAPAYRTYRIKPLCPAASGNDDSSSTIDITTATAAPPSPASLPPRKVA
LVRTKQKEGRASFGRIIPFTRGAITRQKQASPRADPGRPAEDEERRAVCE
MSPDLPTFHTVMKAYAEERDPEGAEMVLGWLMTRGLLPDVVTYTTLMHAY
AGRGDARGAEEVMTRMTGSERLGKDEAVVPNVMTYTTLMSAYAAGGDVER
SEEVLERMEEACVAPNVMTFTTLMTAYTLRGDALGAEEVLKRMLSAFVAP
NANTYTTLLHAYTVNGDAAGAEKVLARMIAADVAPTSMTYATLMTVYAAK
GEVDAAEGVLIRMEAAGVESTAMAYDTLLNAYAVRKDVQGAEMVLTRREA
RGFHPFPLTYNTLMNAYAEEGDVKGAEEVLRRMGEEGVRPDGTTLSTLLH
AYAEAGDPLGAEAVLLRAQGKGGGREGEFEGVDLTVLMYNTLISAYAARR
DIKGAEQVLARLLEKNSDDDGEEEGKGQQQEQEKKVKNKLKPNSITYNAL
LTAYTNAGDMPGAQQVLKRMIGQGLAPDTFTFNTLIGAFVARRDVRAAEK
MVNYMVEHGVLADVVTYSQLLDGYATKVNDMESAEGVLERMEAEGVRPNL
YTYNYLIEGYVKAGEMEVAEGVLGRMRSGGLKPTSMNYCVLMDAYTRRRD
TRGAERILEKMRGDRVKPNVQVFTTLMNAYAKRGDVEGAEGVLARMVAGG
GGEAREGGREGGGSVNVCEPNVHTWSTLMNVYARAGLTNGAEGVLARMTA
AGLNPNVVTFTTLMTAYSRAGDPDGAELVLKRMEAAGASPNVLTYNTLLS
ATSRMGLREGEIEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLL
TCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWK
EMATVFGEAQARFQKGQLPPREFSRVEATFREKGGYFMREGEEEGKKGGG
GTEGAGGEMRRES*
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Synonyms
Publications