NO05G00750, NO05G00750 (gene) Nannochloropsis oceanica

Overview
NameNO05G00750
Unique NameNO05G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr5:243035..243637 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:243035..243637 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00750 vs. NCBI_GenBank
Match: EWM28248.1 (hypothetical protein Naga_100004g2 [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 5.900e-29
Identity = 87/174 (50.00%), Postives = 103/174 (59.20%), Query Frame = 0 
Query:    1 MRLPPRTAKRFGWDWWAWNMVLAATPATILWYGLSRTREGMKGEMGQLKAAIAEQKEHMHRQ---DRQQQGRGGLTVKSDISTSPVVVVAG----VVKGGTPEERIAHLESRLAVLEGHL-----RGRDWNDGSESSNSSVGSSAMGEELLSGVKRRMLGQFEEGVLEALTKIR 163
            MR P   AKRFGWDWWAWNM+LAATPAT+LWYGLS TREG+K E+GQLKAA+AEQ+  M      D     R GL  K     +P    AG       G  PEERIA LE RLA LE        R +      + S++S G  +  E  LSGV+RRML Q EEG +EA  K++
Sbjct:    7 MRAPAHAAKRFGWDWWAWNMLLAATPATMLWYGLSCTREGIKHEVGQLKAAMAEQRGDMQYNTPTDFPMDNR-GLRDKKSEEVTPTPGQAGREDMSAAGARPEERIARLEVRLAALERLSESQCERRQSLEKNMKGSDASEGGGS-EEPFLSGVRRRMLSQLEEGTMEAFLKMK 178
The following BLAST results are available for this feature:
BLAST of NO05G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28248.15.900e-2950.00hypothetical protein Naga_100004g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003798NSK003798Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00750.1NO05G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583630gene_2867Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g2gene2267Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00750.1NO05G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00750 ID=NO05G00750|Name=NO05G00750|organism=Nannochloropsis oceanica|type=gene|length=603bp
ATGCGTCTTCCCCCCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGC
CTGGAACATGGTGCTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGC
TATCCCGGACACGGGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCC
GCGATTGCCGAGCAAAAGGAGCACATGCATCGACAGGACAGACAGCAGCA
AGGGAGGGGAGGATTGACCGTTAAAAGTGACATATCAACATCACCTGTTG
TGGTGGTGGCGGGGGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCG
CATCTGGAGTCCAGACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGA
TTGGAATGATGGATCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTA
TGGGAGAAGAATTGTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTT
GAGGAAGGAGTATTAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGC
CGCTGCTGCTTCTTCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTG
AGGAGAAGGGGAATGGAAAGAAAACGGTAGGGATGGAGCAATCAGCGCAA
TAA
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protein sequence of NO05G00750.1

>NO05G00750.1-protein ID=NO05G00750.1-protein|Name=NO05G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MRLPPRTAKRFGWDWWAWNMVLAATPATILWYGLSRTREGMKGEMGQLKA
AIAEQKEHMHRQDRQQQGRGGLTVKSDISTSPVVVVAGVVKGGTPEERIA
HLESRLAVLEGHLRGRDWNDGSESSNSSVGSSAMGEELLSGVKRRMLGQF
EEGVLEALTKIRRGGSAAAASSTAAASVAAAAAEEKGNGKKTVGMEQSAQ
*
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Synonyms
Publications