NO05G00720, NO05G00720 (gene) Nannochloropsis oceanica

Overview
NameNO05G00720
Unique NameNO05G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4359
Alignment locationchr5:233532..237890 -

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Properties
Property NameValue
Descriptionpre-mRNA processing ribonucleoprotein binding region-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:233532..237890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000244spliceosomal tri-snRNP complex assembly
GO:0000398mRNA splicing, via spliceosome
GO:0000244spliceosomal tri-snRNP complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0046540U4/U6 x U5 tri-snRNP complex
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR036070Nop_dom_sf
IPR027105Prp31
IPR002687Nop_dom
IPR012976NOSIC
Homology
BLAST of NO05G00720 vs. NCBI_GenBank
Match: CDP00180.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 247.3 bits (630), Expect = 8.400e-62
Identity = 133/268 (49.63%), Postives = 185/268 (69.03%), Query Frame = 0
Query:  133 LDVVATLSKTRRYQEHLEKVKDAI----SIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            LD V+ L KT+RY + ++KV+DA+     I N    S+ LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MV+SVTAS+TSGKPLP  +L + +  CD  L+L  A+  VL +VE RM  +APN  A+VG+ +AA+LMG AGGL +L+++PA ++Q++G ++K L G + A    H G L  +++  S PP LR++A RL+A+K  L  R+D+ + +  G
Sbjct:   73 LDSVSKLHKTQRYNDIMQKVEDALEKGSDISN---QSIVLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVISVTASTTSGKPLPDEVLQKTIDACDRALTLDSAKKKVLDFVESRMGYIAPNVSAIVGTAVAAKLMGTAGGLSALAKMPACNVQLLGAKRKTLAGFSTANSQIHVGYLEQTEIFQSTPPTLRKRACRLLAAKSTLAARIDSIKGDSTG 337          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_016569560.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Capsicum annuum])

HSP 1 Score: 247.3 bits (630), Expect = 8.400e-62
Identity = 135/265 (50.94%), Postives = 184/265 (69.43%), Query Frame = 0
Query:  133 LDVVATLSKTRRYQEHLEKVKDAISIENP-PPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            LD V+ L K+RRY + ++KV+DA+  E+      V LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+  VL +VE RM  +APN  A+VGS +AA+LMG AGGL SL+++PA ++Q++G ++K+L G + A    H G +  +++  S PP+LR +A RLVA+K  L  R+D+   +  G
Sbjct:   50 LDNVSKLQKSRRYIDIMQKVEDALERESDVTDKGVVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPVDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTVEACDRALALDSAKKKVLDFVESRMGYIAPNLSAVVGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKRKNLAGFSTATSQFHIGYIEQTELFQSTPPSLRMRACRLVAAKSTLAARVDSINGDPSG 314          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: PHT92768.1 (hypothetical protein T459_00650, partial [Capsicum annuum])

HSP 1 Score: 247.3 bits (630), Expect = 8.400e-62
Identity = 135/265 (50.94%), Postives = 184/265 (69.43%), Query Frame = 0
Query:  133 LDVVATLSKTRRYQEHLEKVKDAISIENP-PPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            LD V+ L K+RRY + ++KV+DA+  E+      V LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+  VL +VE RM  +APN  A+VGS +AA+LMG AGGL SL+++PA ++Q++G ++K+L G + A    H G +  +++  S PP+LR +A RLVA+K  L  R+D+   +  G
Sbjct:   50 LDNVSKLQKSRRYIDIMQKVEDALERESDVTDKGVVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPVDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTVEACDRALALDSAKKKVLDFVESRMGYIAPNLSAVVGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKRKNLAGFSTATSQFHIGYIEQTELFQSTPPSLRMRACRLVAAKSTLAARVDSINGDPSG 314          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_024539451.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 [Selaginella moellendorffii] >EFJ20298.1 hypothetical protein SELMODRAFT_152874 [Selaginella moellendorffii] >EFJ23294.1 hypothetical protein SELMODRAFT_150610 [Selaginella moellendorffii])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 131/257 (50.97%), Postives = 180/257 (70.04%), Query Frame = 0
Query:  133 LDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            L+ VA L  T RY + ++KV +AI    P  M+   E DPEYQLIV  N L  DID EI  +H ++ D Y LKFPELESLV + +DY R V++IGNEMDLT+VDL  +LPSAT+MVVSVTAS+T+GKPL   +L + L  CD  L L E++  VL++VE RM+ +APN  A++GS +AA+LMG AGGL +LS++PA ++Q++G +KK+  G ++A   PH G +  S++V  +PP+LR +A RLV+ K  L  R+DA
Sbjct:   11 LNTVAKLQNTPRYHDLMKKVDEAIESGVPATMAKLSEDDPEYQLIVECNTLSVDIDNEIGVIHNYIRDKYRLKFPELESLVQHPIDYARVVKRIGNEMDLTLVDLEGVLPSATIMVVSVTASTTNGKPLAEEVLQKTLDACDRALDLDESKKKVLNFVESRMAFIAPNLSAILGSAVAAKLMGTAGGLSALSKMPACNVQILGVKKKNSAGFSSATLNPHTGFIFHSEIVQGSPPSLRTRAARLVSGKSTLAARVDA 267          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: CCA22653.1 (U4/U6 small nuclear ribonucleoprotein Prp31 putativ [Albugo laibachii Nc14])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 126/257 (49.03%), Postives = 182/257 (70.82%), Query Frame = 0
Query:  136 VATLSKTRRYQEHLEKVKDAISIENPPPMSVPLESD-PEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQ 392
            +A+L ++ +Y +H+  ++D +S  N    +  ++ D  EY L+V+SN L+  ID+EI  +HRF+V++Y+ KFPEL+SLVPN LDY R V++IGNE D+T+VDL  LLPSATVM VSVT S+TSGKPL P  L  C+ GC  +  L + + ++L +VE RM  LAPN   LVG++IAAQL+GLAGG++ LSRIP+ ++QV+GQ+KK L G ++A  + H G++   D++ + PP LR KA R +A K AL  R+D+ Q
Sbjct:   68 IASLKRSEKYLKHIHTIRDHLSDANEQFQAHSMQKDSEEYHLVVTSNDLMVQIDDEIAAIHRFLVEMYAPKFPELDSLVPNALDYARVVERIGNETDMTLVDLASLLPSATVMSVSVTGSTTSGKPLSPDTLEICIEGCRELFDLEKDKVMILEFVESRMRFLAPNVAQLVGTRIAAQLVGLAGGILELSRIPSCNLQVLGQQKKVLSGFSSAAALRHTGIIFHCDLIQNVPPYLRIKACRALAGKLALCARVDSEQ 324          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: ETK77817.1 (hypothetical protein L915_15983 [Phytophthora parasitica] >ETL31250.1 hypothetical protein L916_15879 [Phytophthora parasitica])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 133/272 (48.90%), Postives = 188/272 (69.12%), Query Frame = 0
Query:  122 EKALPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVPL---ESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIV-DLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            E     +K + + VVATL ++ +Y  H++K+++ + +++    + P    E   EY+L+V+SN L+  ID+EI  +HRF+ D+Y+ KFPEL+SLVPN LDY R V+ IGNEMDLT+V +L  LLPS+ V+ +SVT S TSGKPL    L  C+  CD +LSL + ++++L +VE RM  LAPN   LVG++IAAQL+GLAGG+  L+RIP+ ++QV+GQEKK L G ++A  + H GVL  SD+V S PP LR KA R VA K AL  R+D+
Sbjct:   77 ESLRSSVKQRGIAVVATLKRSPKYLAHVQKIQEYVDVDDASVTAEPKPLEEGSAEYELVVTSNDLMVQIDDEIEAIHRFIADIYAAKFPELDSLVPNALDYARVVKVIGNEMDLTLVEELPKLLPSSAVIGISVTGSGTSGKPLSLEDLKTCMEACDELLSLDKDKNMILRFVESRMKYLAPNVSQLVGTRIAAQLIGLAGGVAQLARIPSCNLQVLGQEKKVLSGFSSAAALKHTGVLFFSDLVQSVPPYLRMKACRAVAGKLALMARVDS 348          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_008446223.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 131/266 (49.25%), Postives = 185/266 (69.55%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIE-NPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            L  L  + LD V+ L KT+RY + ++KV+DA+  + N       LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNE+DLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+ +VL++VE RM  +APN  A+VGS +AA+LMG AGGLV+L+++PA ++Q++G +KK+L G + A      G +  +++  S PP L+ +A RL+++K  L  R+D+
Sbjct:   43 LESLNYEDLDSVSKLQKTQRYNDIMQKVEDALQTDSNISNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEVDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALALDSAKKMVLTFVESRMGHIAPNLSAIVGSAVAAKLMGTAGGLVALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLISAKSTLAARVDS 308          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_016900273.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 131/266 (49.25%), Postives = 185/266 (69.55%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIE-NPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            L  L  + LD V+ L KT+RY + ++KV+DA+  + N       LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNE+DLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+ +VL++VE RM  +APN  A+VGS +AA+LMG AGGLV+L+++PA ++Q++G +KK+L G + A      G +  +++  S PP L+ +A RL+++K  L  R+D+
Sbjct:   12 LESLNYEDLDSVSKLQKTQRYNDIMQKVEDALQTDSNISNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEVDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALALDSAKKMVLTFVESRMGHIAPNLSAIVGSAVAAKLMGTAGGLVALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLISAKSTLAARVDS 277          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_009594918.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 137/273 (50.18%), Postives = 186/273 (68.13%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIENP-PPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            L  L    LD V+ L K+RRY + ++KV+DA+  E+      + LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+  VL +VE RM  +APN  A+VGS +AA+LMG AGGL SL+++PA ++Q++G +KK L G + A    H G +  ++   SAPP+LR +A+RL+A+K  L  R+D+   +  G
Sbjct:   42 LEALNYDDLDNVSKLQKSRRYIDIMQKVEDALEKESDVTNRGIVLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTVEACDRALALDSAKKKVLDFVESRMGYIAPNLSAVVGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKKKTLAGFSTATSQFHVGYIEQTETFQSAPPSLRMRAVRLLAAKSTLAARVDSISGDPTG 314          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_009594919.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 246.9 bits (629), Expect = 1.100e-61
Identity = 137/273 (50.18%), Postives = 186/273 (68.13%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIENP-PPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            L  L    LD V+ L K+RRY + ++KV+DA+  E+      + LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+  VL +VE RM  +APN  A+VGS +AA+LMG AGGL SL+++PA ++Q++G +KK L G + A    H G +  ++   SAPP+LR +A+RL+A+K  L  R+D+   +  G
Sbjct:   10 LEALNYDDLDNVSKLQKSRRYIDIMQKVEDALEKESDVTNRGIVLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTVEACDRALALDSAKKKVLDFVESRMGYIAPNLSAVVGSAVAAKLMGTAGGLSSLAKMPACNVQLLGAKKKTLAGFSTATSQFHVGYIEQTETFQSAPPSLRMRAVRLLAAKSTLAARVDSISGDPTG 282          
The following BLAST results are available for this feature:
BLAST of NO05G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CDP00180.18.400e-6249.63unnamed protein product [Coffea canephora][more]
XP_016569560.18.400e-6250.94PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
PHT92768.18.400e-6250.94hypothetical protein T459_00650, partial [Capsicum... [more]
XP_024539451.11.100e-6150.97U4/U6 small nuclear ribonucleoprotein Prp31 homolo... [more]
CCA22653.11.100e-6149.03U4/U6 small nuclear ribonucleoprotein Prp31 putati... [more]
ETK77817.11.100e-6148.90hypothetical protein L915_15983 [Phytophthora para... [more]
XP_008446223.11.100e-6149.25PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
XP_016900273.11.100e-6149.25PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
XP_009594918.11.100e-6150.18PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
XP_009594919.11.100e-6150.18PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003800NSK003800Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00720.1NO05G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669718gene_2864Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102057g1gene2264Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00720.1NO05G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00720 ID=NO05G00720|Name=NO05G00720|organism=Nannochloropsis oceanica|type=gene|length=4359bp
GTCAGCCATAGTGACTACTCTGTGGTCGTTGTGGGGATTATGTGGGGAGA
GTTTTTGTGAGTGTCCAACACCCCCCATGTCCTTCTTTTGGGTCTAGCGC
TGCGCAAGTTGCCTCAGCTCTCAACCCCGGCATCCTCTTTTTCCACCAGC
CGCTATCCCACTGCAGGCAACATAATCCATGCGTAAGCGTACGTCTCGTC
TTGGTACGTGGGCGCTGTTGGCTGCTGGTGGATGGCCAAAGGCAGGAGTC
GATTAGGCGATGAGGCCTCCTCCCCCTCCTGATGCTCAGACGAATGGCAG
CCACGCTTGTCCACCACAAGGCATCCAAAATCATTCAGCACCACAGACAT
GGAGATTACTTATGTTGTTAGCGTGAGAGTAGGTAAAGATGAGGTGCATG
AAAGCGTTTCGAAGCACGCAAACATAGAGAAGAAGTTTCCTCCTCTGCCT
CTCCGCGGCCACCCGCGTTCGCTTGTGCGGCCTGCCTTCTCCTTCGTCCA
CACAACTGTGCTGCGCGCACCGTGGAGTGGCGTCTCCTTATTCTTCGTGC
TCATTCCTTCCTCATGgtaagctattattgcctgtgtatgagggttggaa
tcatcggtcatgcaatgccttaagactaagacgcccaccaccaaccactt
tttctccggctccccacctcatgcacgcatcccagGAGCAACGAGCAGCA
AGCTGCAGCATAGGCAACAACCGACCTCCTCTCCAGGAAGCAAGCGGCCG
TCTCTGCATCATGgtacgtcccccgacatcgtcttgcttttcatgcgtat
ttatttgtcagattgcatcgctgctactctagtcgccccccgcccccgtc
tctaccttctctctttccctccaacccgtccacttggccgccccctcacc
tttcctcggcctgcccccctctccttcaccacgcgcacacagACAGCACT
TGGGGACGACTCCTTCATCAACGACTTGGATGGGCTCGGGGATGATTCAG
AGGATGAGGAGGAGGAAGAGAAGGAGAGAAGGGAGGGCACGGTTGGCAAC
GGAGGAGGTGGCAAGAGTAGTAATGGAGGCGTGCGTGTCAAGGCGGAAGA
CCTCGACAGTCTCGATGACAGCGAGGACGAAGATGAGGAGGAGGGGAGGG
AAAACGGACGAAAGAAACGAAAAATGAAGGAGGGAGGGGAGGAAGGGATG
GACGTGGAGAGAGGCAGTGAGTTCGAAAAGGCTTTGCCAAAGCTGAAAGG
GAAGACGCTGGATGTCGTCGCTACTTTAAGTAAGACCAGGCGCTACCAAG
AGCACCTGGAGAAGGTCAAGGACGCGATTAGCATAGAGAATCCACCTCCT
ATGAGTGTGCCGCTGGAGAGTGACCCAGAGTATCAGCTGATTGTGTCATC
GAATCGATTGGTGCAAGgtaaaagggacggagggacggagggatgggagg
gacggaggggcggatggactatatgctgatcgactgatgccaccaactcg
ccctttaccccctccctcctttccttcctttccttcctccctagACATCG
ACGAGGAGATACTTACCGTGCACCGGTTTGTGGTTGACCTCTACTCCCTC
AAGTTCCCCGAGCTCGAGTCCCTCGTTCCCAACAAGCTGGACTACGTCCG
AACAGTCCAGAAGATCGGTAACGAGATGgtaggtacgagccctcccatcg
tccctccccctatccctctcagtgtgcctttctgcgccacattcctctca
cccttccccttcctctctcccttcctccctccctccctccctcagGACCT
GACCATTGTCGACCTCAATGATCTCCTCCCATCTGCAACTGTGATGGTGG
TGTCCGTCACGGCCAGTAGCACCAGCGGGAAGCCCCTCCCGCCTTCTCTC
CTTTCGGAATGTCTGGGGGGATGCGACGCCGTCTTATCCCTTATGGAGGC
ACGATCCCTCGTCCTGTCGTACGTTGAACGAAGGATGAGCGTTTTGGCGC
CCAACACCTGTGCCCTTGTTGGGAGTAAGATAGCGGCCCAGCTGATGGGT
CTGGCGGGAGGGTTAGTGTCCCTGTCGCGCATTCCCGCGAGTCACATACA
Ggtagggacggggagggaggaagggaggaagggagggaaggaggggatga
gggagatgtgtctccttagcgcatcccctacaggtagagagtatgaggga
agggagggagggaggaagggagggagggaggaagggccagctacttttca
tttcaagtgaccgaccctctcctcccttccctccctcccccctccctccc
cctgtcagGTGATGGGACAGGAGAAGAAGCACCTGCAGGGCATGGCTGCA
GCCCAAGGCATCCCTCACGCGGGTGTATTAATTGGGAGTGACGTTGTCAT
GAGCGCCCCTCCGGCCTTGAGGCAAAAGGCGCTTCGGTTGGTGGCGAGTA
AGTTCGCCTTGACCACCCGTATGGATGCGTATCAACAGGAAGGAGGGGGG
GAGGGGGGGAGGGCGGGAGGGCGTTTCGGGCGGAGTGCGAAGACAAGATC
ATGAAATGGCAAGAGCCCAGCAAAGGGAAGGAGAAAAAAGCCCTTCCGGT
GCCGGAGATGCAGGCGAGGAAGAAGAGGGCGGGGAAGAGGGTCAGTAAGG
CGAAGGAGCGATTCGCGATGACTGAGATGCGGAAGGAGCATGGACGGCGg
tacgcagctttccctctttgcctcccttcttctctccctcccaccctccc
tctgcatactttaaaaacaccaagctatatcctctcttaccctccctggc
ctccctctctttcccttccctctttccctccccccttatctctttcagGG
CGTTCGGTGGCGCCAGCGCCGGTGCAGAATACGGCGACGAGGCCATGGGT
ATGGACACAGgtgcgtgctttcaagtgctcttccctccctccctctcttc
cttccttccttccccccatcgtaccgctacctttcctcgaacacctgacg
tatgttaccccctccctccctccccgcccgccctccgtccttccctccct
ccactagGTATGCTGGGGTCGCAAGGAGGGAGACTCCGACTGCCAGGCGC
TAAGGAGCAGAAGCAGAATATTGGTAAAAAGAAGAAGGAGGAGATGGCGA
AGATGGCGGGCGGGGGAGGGTCCGGGGGAGGAAGGGTTGTGCTGGACATG
GGAGGAGGCTCTGGGGCGACTGGTGGTATGGCCTCGTCGCTGGTGTTTAC
ACCGACGCAAGGGCTAGAGTTGGTGAATCCGAATGCGATGGAAGAGAAAA
AGAGGCGGCTGGAGGAGGCGAATAAGAGCTGGTTTGACTCGAACAGTGGA
TTTATGAGTGCTAAGCCAAAGTAGACAGGTGGGGGGGGGGCAGAAGGAAG
GGAAAGCAGCAGCAGCAGCAACAACAGCAGCAGCACCACCACCACCAGCA
GCACCACTAGCAGCACCAGCACCAGCACCAGCCTCAGCACCAGCACCAGC
GCAAGCGCAAGCGCCAGCACCAGCACCAGCACCACCCGCAGGAGCAGACG
GGGGGTAGTGACGGAAATAATAGGGGGGGAGAGGGATTAGAGTACGGGCG
ATATGGTATGAAAAAGAAGAAATATAGAGAATGTGCAGACACAAAGATCG
AGATAAGCAGAGAGGCTACAACATATTTTCCTTTGTCTCCCATTTATCAT
GTTTTCCCTTACCTCTTACCCTCTACCTTCCTTTCACCTTCTCCTCTTCC
ATCCATTCCTCCGTCTCAACCTTGCCTTTCTCCTCTTTCTCCCTTCGATC
TCTTCCTCTTTCTCAATTCCGAGCCGCTGGACGGCCGTATTTGCGACGCC
AGGCCTCCACGTCCACGCCCCGCACGCTGCTACTCCTGCTTCTGTCACTA
CCTTTTCTTATCACATTTGCAACAACAGCGCCAAAGTCAGGAGGTGGACA
AGGCGAAGGCGTAGCAGCAGCAGCAGTGGCTCTAGATAGGATCGGTCGCG
CAGTGAAATAAAACGGAGGTGGTAAAGAAGAGCCTGAAGAGGAAAAGGGG
CATGAGGAGAAGGAGGAAGTAGAACAGGGGGCTGGGATCTGGTAGAACCC
CGCACTCCGCAGCTCCGCAATCTCCTTCCTCAAATCCTGGCTTTCGCGCC
GCCATTCCTGCAGCAACCGCATGGCCAATGTCCCCTTTCCACTGTTGATG
TTCCCACTTCTGCTAGTGCTGCTATTGGGTCCCCTGCCTCGTCTCCTCGT
CAATGCTGCACTGTAATTTTCTCCCCCTCCTGCCAACATGTGTCGCGGCA
CAGGCGACACAGGTGCCGGTGGAGACATGAATAAATTCTCCGGTCCATCG
TCCTCCTCC
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protein sequence of NO05G00720.1

>NO05G00720.1-protein ID=NO05G00720.1-protein|Name=NO05G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MEQRAASCSIGNNRPPLQEASGRLCIMTALGDDSFINDLDGLGDDSEDEE
EEEKERREGTVGNGGGGKSSNGGVRVKAEDLDSLDDSEDEDEEEGRENGR
KKRKMKEGGEEGMDVERGSEFEKALPKLKGKTLDVVATLSKTRRYQEHLE
KVKDAISIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVD
LYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVS
VTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPN
TCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGI
PHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGGEGGR
AGGRFGRSAKTRS*
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Synonyms
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