NO05G00680, NO05G00680 (gene) Nannochloropsis oceanica

Overview
NameNO05G00680
Unique NameNO05G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr5:226191..227393 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:226191..227393 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
Homology
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BLAST of NO05G00680 vs. NCBI_GenBank
Match: XP_005852552.1 (hypothetical protein NGA_0116820 [Nannochloropsis gaditana CCMP526] >EKU23280.1 hypothetical protein NGA_0116820 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.5 bits (519), Expect = 6.000e-49
Identity = 102/169 (60.36%), Postives = 121/169 (71.60%), Query Frame = 0 
Query:  200 DKEMLEELTHMFYRAVNERNSDMLRKIWLEXXXXXXXXXXXXXSAGDGNVTMGYDAVVDWLNVLRKEERRLDPGKKGLMLCPTTDISDLRVCVNGLHAWVTCKEVMARGLLSSNMQAYNLVGNG-GLGGGGMMKEVFCGTNVWRKWNGQWRLLSHFSGRLASVQEELSE 368
            DKE+LEELT M Y+++NER  D+  K+WL              SAGDGNVT+G+  VVDWLNVLRKEER+LDPGKKGLMLCPTT+IS++RVCVNGLHAWVTC EV+ RGLL          G G G GG    KE   GTN++R+WNGQW+L+ HFSGRLA VQ EL +
Sbjct:    2 DKEILEELTRMLYQSLNERQQDVWAKLWLN-DDQGGGGSSVMLSAGDGNVTVGHAGVVDWLNVLRKEERKLDPGKKGLMLCPTTEISNVRVCVNGLHAWVTCHEVLTRGLLKDG-------GEGRGKGGEAGEKEPMWGTNIFRRWNGQWKLMCHFSGRLAGVQGELQD 162
The following BLAST results are available for this feature:
BLAST of NO05G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852552.16.000e-4960.36hypothetical protein NGA_0116820 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003814NSK003814Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00680.1NO05G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|389071gene_2861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00680.1NO05G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00680 ID=NO05G00680|Name=NO05G00680|organism=Nannochloropsis oceanica|type=gene|length=1203bp
ATGAGGACTCCTCATCCTGCGCCGCCACCACCATTACAACTACGGCGGCG
TGTGGTTGGTACCGACGGATACTCCAGCAGCGGCAGCAGCAGCAGCGGCA
GCAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCCGTCTTACC
TTCCTGCTGCTCATCGTTAGCAGCGCCGTGGCCTCCCCATCTGCCTTTTG
GGGCAGTGCGGGCTCCATACCATCACATCCTACGGCATTCCAAGGGAGGA
TGATGCTCTCTCCGTCCTCCACCTCGTCTTCCTCCTTTGGACGTGGTCTT
CCAAGAAGACAGGCTGCCGGCGGGGGTGACAAGAGCACCAAGGCGTCCTC
CTCCTCCTCTTCCACCAGCACCACCTCCCCCTCCCCCGCCACTAGCACAT
CCTCCACCACCAACTCTCCTCGTCCTCCCGTCCAATCCATCCCTTCCCGT
CTCCTCGCCGAGTCTGCCGCTGCAGGCGCTGCCGCTGCTGCCGCGACGGG
GGCCGGAGCTCCTTCCTTCACGCTTTCTGATTTGCTCCAACGCGATCGAC
AAGCAGTGACTTCCCTTCCTCCTGCACCTCCCCAGGATATGAGCCAAGAT
AAAGAGATGCTGGAGGAATTGACGCACATGTTTTACCGCGCCGTGAATGA
ACGGAATTCAGATATGTTGCGAAAAATCTGGTTAGAGGAGGAGATGAGTA
GCAGCAGCAGCAGCAGTGTCGTTTTAAGTGCCGGGGATGGCAATGTCACG
ATGGGCTACGACGCTGTTGTGGACTGGCTAAATGTGTTGAGGAAGGAGGA
GCGGCGCCTCGACCCGGGCAAGAAAGGGTTGATGTTGTGCCCTACCACGG
ACATAAGTGACCTGCGGGTGTGTGTCAATGGCCTGCATGCCTGGGTTACA
TGCAAGGAGGTGATGGCCCGTGGGCTATTGAGCAGCAACATGCAGGCGTA
CAACTTGGTGGGGAATGGGGGTTTGGGAGGAGGGGGGATGATGAAGGAGG
TGTTTTGTGGGACGAATGTGTGGAGGAAGTGGAACGGTCAGTGGCGGTTG
CTTAGTCATTTCTCAGGCAGGCTGGCAAGTGTGCAGGAGGAGTTAAGTGA
GTATTTAGAGTACAAAAAGATGAAGGATATGGCAGGAGGAAGGGGGGGAA
AGGAGGGAGGGGAGGAGCGGGTGGACAGCAAAATATTCAGCGCATCCCCT
TGA
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protein sequence of NO05G00680.1

>NO05G00680.1-protein ID=NO05G00680.1-protein|Name=NO05G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MRTPHPAPPPPLQLRRRVVGTDGYSSSGSSSSGSSSGSSSSGSSSSSRLT
FLLLIVSSAVASPSAFWGSAGSIPSHPTAFQGRMMLSPSSTSSSSFGRGL
PRRQAAGGGDKSTKASSSSSSTSTTSPSPATSTSSTTNSPRPPVQSIPSR
LLAESAAAGAAAAAATGAGAPSFTLSDLLQRDRQAVTSLPPAPPQDMSQD
KEMLEELTHMFYRAVNERNSDMLRKIWLEEEMSSSSSSSVVLSAGDGNVT
MGYDAVVDWLNVLRKEERRLDPGKKGLMLCPTTDISDLRVCVNGLHAWVT
CKEVMARGLLSSNMQAYNLVGNGGLGGGGMMKEVFCGTNVWRKWNGQWRL
LSHFSGRLASVQEELSEYLEYKKMKDMAGGRGGKEGGEERVDSKIFSASP
*
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Synonyms
Publications