NO05G00470, NO05G00470 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G00470 vs. NCBI_GenBank
Match: EWM28342.1 (transcription elongation factor spt4 [Nannochloropsis gaditana]) HSP 1 Score: 189.9 bits (481), Expect = 8.200e-45 Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0 Query: 118 FAELPQATKGLRACRKCRLIKEFSQFVERGCDNCRQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGEEEFDMGLEE 213 FAELPQATKGLRACRKCRLIKEF+QFVE GCDNC QFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRY+PGLYALQVEGEEEFD EE Sbjct: 125 FAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE 219
BLAST of NO05G00470 vs. NCBI_GenBank
Match: CCI39857.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 91.3 bits (225), Expect = 4.000e-15 Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 A++P + LRAC C L+K F+QF + GC+NC + ++++ AE T+ HY GM+AL+ P++SW AKWQ R PG+YA+ V GE Sbjct: 16 ADIPNTFRELRACLTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTTAHYDGMIALMRPKESWVAKWQRLVRMVPGIYAVSVTGE 103
BLAST of NO05G00470 vs. NCBI_GenBank
Match: CBJ33539.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 89.7 bits (221), Expect = 1.200e-14 Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 AE+P + KGLRAC++C L+K QFV GC+NC + DQ + T+ +++G++A++ PE SW KWQ +PG+YA++V GE Sbjct: 23 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPGMYAIEVVGE 110
BLAST of NO05G00470 vs. NCBI_GenBank
Match: OWZ14457.1 (Transcription elongation factor SPT4 [Phytophthora megakarya]) HSP 1 Score: 89.0 bits (219), Expect = 2.000e-14 Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 A++P + LRAC C LIK F+QF + GC+NC + ++++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCNFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLVPGIYAVSVSGE 106
BLAST of NO05G00470 vs. NCBI_GenBank
Match: XP_009518860.1 (putative transcription protein [Phytophthora sojae] >EGZ23572.1 putative transcription protein [Phytophthora sojae]) HSP 1 Score: 88.6 bits (218), Expect = 2.600e-14 Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 A++P + LRAC C LIK F+QF + GC+NC + ++++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106
BLAST of NO05G00470 vs. NCBI_GenBank
Match: EJK78022.1 (hypothetical protein THAOC_00107 [Thalassiosira oceanica]) HSP 1 Score: 88.6 bits (218), Expect = 2.600e-14 Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNCRQFE---DQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGEEEFDM 209 A +P + KGLRAC +C ++K F QF+E+GC+NC E + E + T+ + G +A+ P+DSW+AKW R+ PG+YA+ + G+ D+ Sbjct: 25 ASVPSSMKGLRACMRCGIVKTFEQFIEQGCENCAILELEGNSERCNQCTTAFFEGQVAVADPQDSWTAKWLRVDRFLPGVYAISITGQFSKDV 117
BLAST of NO05G00470 vs. NCBI_GenBank
Match: XP_008892419.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI49339.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK89229.1 hypothetical protein, variant [Phytophthora parasitica] >ETL42640.1 hypothetical protein, variant [Phytophthora parasitica] >ETL95810.1 hypothetical protein, variant [Phytophthora parasitica] >ETM48998.1 hypothetical protein, variant [Phytophthora parasitica] >ETN23226.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO78068.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP19106.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP47055.1 hypothetical protein, variant [Phytophthora parasitica P10297] >KUG00210.1 Transcription elongation factor SPT4 [Phytophthora nicotianae]) HSP 1 Score: 88.6 bits (218), Expect = 2.600e-14 Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 A++P + LRAC C LIK F+QF + GC+NC + ++++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106
BLAST of NO05G00470 vs. NCBI_GenBank
Match: KNE56805.1 (hypothetical protein AMAG_02581 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 88.6 bits (218), Expect = 2.600e-14 Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0 Query: 115 QNTFAELPQATKGLRACRKCRLIKEFSQFVERGCDNCRQFED----QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE--EEFDMGLEE 213 Q + ++LP+ + LRAC+ C LIK SQF + GCDNC + D AE TS + G +A++ PE SW AKWQ Y PGLYA++V G E+ + LE+ Sbjct: 2 QQSTSQLPKNKRDLRACKLCSLIKTLSQFKQDGCDNCEEILDLRRHPSRVAECTSSTFEGAIAMLKPERSWVAKWQRVDPYVPGLYAIRVSGRIPEDIEATLEQ 105
BLAST of NO05G00470 vs. NCBI_GenBank
Match: POM66297.1 (Transcription elongation factor SPT4 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 88.6 bits (218), Expect = 2.600e-14 Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 A++P + LRAC C LIK F+QF + GC+NC + ++++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106
BLAST of NO05G00470 vs. NCBI_GenBank
Match: XP_002999313.1 (transcription elongation factor SPT4 [Phytophthora infestans T30-4] >EEY69459.1 transcription elongation factor SPT4 [Phytophthora infestans T30-4]) HSP 1 Score: 88.2 bits (217), Expect = 3.400e-14 Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 119 AELPQATKGLRACRKCRLIKEFSQFVERGCDNC---RQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE 204 A++P + LRAC C L+K F+QF + GC+NC + ++++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE Sbjct: 19 ADIPNTFRELRACMTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106 The following BLAST results are available for this feature:
BLAST of NO05G00470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G00470 ID=NO05G00470|Name=NO05G00470|organism=Nannochloropsis oceanica|type=gene|length=1248bpback to top protein sequence of NO05G00470.1 >NO05G00470.1-protein ID=NO05G00470.1-protein|Name=NO05G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bpback to top Synonyms
Publications
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