NO05G00450, NO05G00450 (gene) Nannochloropsis oceanica

Overview
NameNO05G00450
Unique NameNO05G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr5:166753..167301 -

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Properties
Property NameValue
DescriptionP-loop containing nucleoside triphosphate hydrolases superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:166753..167301 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Homology
BLAST of NO05G00450 vs. NCBI_GenBank
Match: SAM01664.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 112.5 bits (280), Expect = 1.200e-21
Identity = 71/144 (49.31%), Postives = 96/144 (66.67%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQK 145
            M+ T  +RR+ ++  P N DS YKP+ R+ R+FNTL++PKSLQ  LPFASKPK+QQ  S   + YL KRAVV++PEEKK + L+Q L T+RN K  K KL+  E+ AA DK K K  E+  V+   XX   +R++ KA  A+ K
Sbjct: 1039 MRLTGQVRRDLELHAPQNVDSTYKPIERQTRRFNTLKIPKSLQTDLPFASKPKIQQ--STNKKSYLAKRAVVLEPEEKKIYTLMQQLNTLRNEKNLKRKLKDSERQAAYDKKKAKVAEMDVVKDXXXXKDYFRKESKAAIAKAK 1180          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: ETI39096.1 (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica P1569] >ETM39143.1 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica])

HSP 1 Score: 109.8 bits (273), Expect = 7.500e-21
Identity = 66/145 (45.52%), Postives = 95/145 (65.52%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQKR 146
            MKTT  LR+E+++ +PVN DSLYKP+VR+ R+F+  +VPK LQA LPFASKPK + K+ GA +GYL  RAV ++PEEKKK+  +  + TVR  + A  K R+  + A   K K+++++ F    K     KYR +GK    R ++
Sbjct: 1031 MKTTYELRKEQKLAVPVNPDSLYKPIVRKERQFSAFKVPKKLQANLPFASKPK-EDKKKGAKKGYLASRAVALEPEEKKKYSFMLRVNTVRRDREATRKERQSHRNAENLKRKQREEKQFEGVHKAEKKAKYRAEGKEAAYRAQK 1174          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: XP_008911029.1 (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica INRA-310] >ETK79308.1 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica] >ETL32719.1 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica] >ETL85987.1 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica] >ETN03802.1 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica INRA-310] >ETP09011.1 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 109.8 bits (273), Expect = 7.500e-21
Identity = 66/145 (45.52%), Postives = 95/145 (65.52%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQKR 146
            MKTT  LR+E+++ +PVN DSLYKP+VR+ R+F+  +VPK LQA LPFASKPK + K+ GA +GYL  RAV ++PEEKKK+  +  + TVR  + A  K R+  + A   K K+++++ F    K     KYR +GK    R ++
Sbjct: 1031 MKTTYELRKEQKLAVPVNPDSLYKPIVRKERQFSAFKVPKKLQANLPFASKPK-EDKKKGAKKGYLASRAVALEPEEKKKYSFMLRVNTVRRDREATRKERQSHRNAENLKRKQREEKQFEGVHKAEKKAKYRAEGKEAAYRAQK 1174          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: ETO67848.1 (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica P1976])

HSP 1 Score: 109.8 bits (273), Expect = 7.500e-21
Identity = 66/145 (45.52%), Postives = 95/145 (65.52%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQKR 146
            MKTT  LR+E+++ +PVN DSLYKP+VR+ R+F+  +VPK LQA LPFASKPK + K+ GA +GYL  RAV ++PEEKKK+  +  + TVR  + A  K R+  + A   K K+++++ F    K     KYR +GK    R ++
Sbjct: 1031 MKTTYELRKEQKLAVPVNPDSLYKPIVRKERQFSAFKVPKKLQANLPFASKPK-EDKKKGAKKGYLASRAVALEPEEKKKYSFMLRVNTVRRDREATRKERQSHRNAENLKRKQREEKQFEGVHKAEKKAKYRAEGKEAAYRAQK 1174          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: ETP37041.1 (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica P10297])

HSP 1 Score: 109.8 bits (273), Expect = 7.500e-21
Identity = 66/145 (45.52%), Postives = 95/145 (65.52%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQKR 146
            MKTT  LR+E+++ +PVN DSLYKP+VR+ R+F+  +VPK LQA LPFASKPK + K+ GA +GYL  RAV ++PEEKKK+  +  + TVR  + A  K R+  + A   K K+++++ F    K     KYR +GK    R ++
Sbjct: 1031 MKTTYELRKEQKLAVPVNPDSLYKPIVRKERQFSAFKVPKKLQANLPFASKPK-EDKKKGAKKGYLASRAVALEPEEKKKYSFMLRVNTVRRDREATRKERQSHRNAENLKRKQREEKQFEGVHKAEKKAKYRAEGKEAAYRAQK 1174          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: XP_001420661.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO98954.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 108.2 bits (269), Expect = 2.200e-20
Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQKRR 147
            MKT   LR EK +PIPVN DS+YKP+ R+ R FN LQVPK+LQ ALPF SKPK+++ R+   E   ++RAVV D EE K   ++Q L T+RN KLAK + ++  + AAR K ++ + E      K      YRE+GKA+ A+ + R
Sbjct:  992 MKTVGQLRFEKSMPIPVNPDSIYKPIERQKRVFNKLQVPKALQQALPFKSKPKLEKART--RETLEQRRAVVQDKEENKLATMVQQLNTIRNEKLAKREQQQAARRAARAKAQKIEDEWRGQLKKDNLKRAYREKGKAEAAQARAR 1135          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: XP_007512098.1 (predicted protein [Bathycoccus prasinos] >CCO66186.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 107.5 bits (267), Expect = 3.700e-20
Identity = 66/145 (45.52%), Postives = 92/145 (63.45%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAVQGKTXXXXKYREQGKAQQARQKR 146
            M+T   +R + Q+ IPVN DS+YKP+ R+ R FN LQ+PK+LQ ALPF SKPK++  R    +   +KRAVV D EEKK   ++Q L T+RN K+AK K +++ + A + K   K  E  +V  K     KYRE+GKA++ R  R
Sbjct: 1022 MRTVGQIRYDNQMTIPVNPDSIYKPIERKKRVFNKLQIPKALQQALPFKSKPKLEPSRK--RKTLEQKRAVVQDKEEKKMTTMVQQLNTIRNEKMAKRKAQQDVRRAVKAKKDAKDNEWRSVLEKERKKSKYREEGKAEKLRALR 1164          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: ORZ21116.1 (hypothetical protein BCR42DRAFT_368790 [Absidia repens])

HSP 1 Score: 107.1 bits (266), Expect = 4.900e-20
Identity = 61/122 (50.00%), Postives = 85/122 (69.67%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKLRREEKLAARDKVKEKQQELFAV 123
            M+ T  +RR+  +  P N DS YKP+ R+ R+FNTL++PKSLQ+ LPFASKPK+Q  ++ + + YL KRAVV++PEEKK + L+Q L T+RN K  K KL+ EE+  A +K K K  E+  V
Sbjct: 1041 MRLTGQVRRDLDLHAPQNVDSTYKPIERQTRRFNTLKIPKSLQSDLPFASKPKIQ--KAASKKSYLAKRAVVLEPEEKKIYTLMQQLNTLRNEKNLKRKLKDEERQQAYEKKKAKIAEVDVV 1160          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: XP_008219075.1 (PREDICTED: ribosome biogenesis protein BMS1 homolog [Prunus mume])

HSP 1 Score: 106.7 bits (265), Expect = 6.300e-20
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAK 98
            MKTTA LRRE  +PIPVNKDSLYKP+ R+++KFN L +PKSLQAALPFASKPK    RS        +RAVVM+P E+K H L+Q L  +RN K+ K
Sbjct: 1058 MKTTAELRREHNIPIPVNKDSLYKPIERKLKKFNPLVIPKSLQAALPFASKPK--DIRSRGRPLLENRRAVVMEPHERKVHALVQHLRLIRNEKIKK 1152          
BLAST of NO05G00450 vs. NCBI_GenBank
Match: KZM85333.1 (hypothetical protein DCAR_027245 [Daucus carota subsp. sativus])

HSP 1 Score: 106.7 bits (265), Expect = 6.300e-20
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0
Query:    1 MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFASKPK-VQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKL 101
            MKT A LRR++ +P+PVNKDSLYKP+ R+VRKFN L +PKSLQAALPFASKPK +  +R    E    +RAVVM+P E+K H L+Q L  +RN K+ K KL
Sbjct: 1038 MKTVAELRRDQNLPVPVNKDSLYKPIERKVRKFNPLVIPKSLQAALPFASKPKNIPSRRRPLLE---NRRAVVMEPHERKVHALVQHLQLIRNDKMKKRKL 1135          
The following BLAST results are available for this feature:
BLAST of NO05G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
SAM01664.11.200e-2149.31hypothetical protein [Absidia glauca][more]
ETI39096.17.500e-2145.52arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
XP_008911029.17.500e-2145.52arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ETO67848.17.500e-2145.52arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ETP37041.17.500e-2145.52arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
XP_001420661.12.200e-2047.26predicted protein [Ostreococcus lucimarinus CCE990... [more]
XP_007512098.13.700e-2045.52predicted protein [Bathycoccus prasinos] >CCO66186... [more]
ORZ21116.14.900e-2050.00hypothetical protein BCR42DRAFT_368790 [Absidia re... [more]
XP_008219075.16.300e-2060.82PREDICTED: ribosome biogenesis protein BMS1 homolo... [more]
KZM85333.16.300e-2059.41hypothetical protein DCAR_027245 [Daucus carota su... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003839NSK003839Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00450.1NO05G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539713gene_2839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00450.1NO05G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00450 ID=NO05G00450|Name=NO05G00450|organism=Nannochloropsis oceanica|type=gene|length=549bp
AGGGAGGGGTGGCGTTGATGAAGACGACGGCGATGCTGAGGAGGGAGAAG
CAGGTGCCGATCCCTGTGAACAAGGACTCGCTTTACAAGCCGGTGGTGAG
AGAAGTCCGGAAATTTAACACTTTGCAAGTCCCAAAATCCCTCCAGGCGG
CCCTGCCCTTCGCCTCGAAACCCAAGGTGCAACAGAAGAGGAGTGGCGCC
CACGAGGGGTACTTGAAGAAGAGGGCGGTGGTGATGGATCCGGAAGAGAA
GAAGAAACACTTTCTCCTTCAGGCCCTTGCCACCGTGAGGAATGCGAAGC
TTGCCAAGGCTAAGCTGAGGAGGGAAGAAAAGCTGGCGGCCAGAGACAAG
GTGAAAGAGAAACAGCAGGAGTTGTTTGCCGTGCAGGGGAAGACGGAGAA
GAAGAGGAAGTATCGCGAGCAGGGCAAGGCACAACAGGCCAGGCAAAAAC
GGAGGAGTTAGGAGGGGGAGGAGGGGAGGGAAGAAGGGAGGGGAGGGAGG
GTGGCATATAGAGAGAGAGAAAAGTCGGATAAGAAGCGAAGCAATATGG
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protein sequence of NO05G00450.1

>NO05G00450.1-protein ID=NO05G00450.1-protein|Name=NO05G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MKTTAMLRREKQVPIPVNKDSLYKPVVREVRKFNTLQVPKSLQAALPFAS
KPKVQQKRSGAHEGYLKKRAVVMDPEEKKKHFLLQALATVRNAKLAKAKL
RREEKLAARDKVKEKQQELFAVQGKTEKKRKYREQGKAQQARQKRRS*
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Synonyms
Publications