NO05G00380, NO05G00380 (gene) Nannochloropsis oceanica

Overview
NameNO05G00380
Unique NameNO05G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2935
Alignment locationchr5:145065..147999 -

Link to JBrowse

Properties
Property NameValue
DescriptionF-box domain, cyclin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:145065..147999 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00380 vs. NCBI_GenBank
Match: EWM28350.1 (F-box domain, cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 103.2 bits (256), Expect = 2.700e-18
Identity = 123/366 (33.61%), Postives = 153/366 (41.80%), Query Frame = 0 
Query:  196 LSEALWREIATFLPLVDLLPFSRLSRRAASLRPSLLRTWLRQRHGILLAERGREGRVEKGRGMTAPYVLSILRFVQGEVIPCNRAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAYTHPSSLAVDGGIVPLLPXXXXXXXXXXXXXXXXXXFLARAFEGGREPNALHVTWAGLAFGHRRWKEGGRGXXXXXXXXXXLESLPWRSIV-----------------------------------------------------GWISILKTPTRTGQVKIVAKFPSXXXXXXXXXXXXXXXXXXXXXXTYISVWLDSPQLLHSRMITFCEAHARSLKPGGE 509
            L + LWREIA+ L L  LL FSRL RR   +RP  L  WLR+RHGI+L E  R+G +EK     +   L+ +RFVQGEVI C +  +                           XXXXXXXXXXXXXXXXXXXXXX       A+   S+   +  +   LP                      AF  GRE  ++ VTW G+AF  RR   G RG          ++ LPWRSI+                                                     GWI++L T TR GQ+KIV+  P                        YI + LD+PQLLHSRMITFC+      K GG+
Sbjct:  144 LPDDLWREIASHLSLRTLLLFSRLCRRTVHIRPPFLERWLRERHGIVLREGERDG-LEK----RSTRALAAVRFVQGEVIACRKGML--------------------SVAPPPPXXXXXXXXXXXXXXXXXXXXXXNATNIPQAFHTDSNHPPESSLPHALP-----------HSLRLSDLFGTAFNRGRELQSVAVTWKGMAFRSRRRLAGRRG-TGEDGEEEGVKILPWRSIMGASPIKDDTIQKIDEHKTDEKWRTHEDECCQTHARPYRFHFLPPSFLFSPSPPGWITVLPTQTRPGQIKIVSTLP-----------PAWNKRGRARKAAYILLSLDAPQLLHSRMITFCKKREGG-KAGGK 460
The following BLAST results are available for this feature:
BLAST of NO05G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28350.12.700e-1833.61F-box domain, cyclin-like protein [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00380.2NO05G00380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G00380.1NO05G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583489gene_2829Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100657g2gene2227Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00380.2NO05G00380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G00380.1NO05G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00380 ID=NO05G00380|Name=NO05G00380|organism=Nannochloropsis oceanica|type=gene|length=2935bp
CCACAGCGCGTGCAAAGATGCCGTCAGCTCCACTTATTCCTTCCGCTATG
ATAGTATACCGATGGTTGCGACGCCTTACTCCCCGACGCCCCAAGTGTTT
TCAAGCAgcagcagcagcagcagcagcagcagcagtgcagggcccacatg
agcagcaacatcagcaacagcagcagccgcagcagcagcagcagcaacaa
caacaacaaggaggagaaagagaaggagaacgaggtatgtgagaatggca
tgtgatttttttgtcatggacaagtgctcgccgagtttggtgcccgtaca
taggaactgacttgttcactccatacagcgacggcagCAGCAGCAGCAGC
AGCAGCAGCGACCGCCGCGGCTAAGGTGCCGCAAGAAGAGGAACAGGAGA
GCTTAGAGCACCAAAAGCAGGAGCCAGAGTCACGAGgtatgttggtttga
gtgtgtatgcccgatgccatgggtgtgtgcaggtcattgtaggggtgtga
acggctcgaattcatctcttaatgcatatttgttcaacctgcgcgaagag
aaggggaaagcgaggacaaagacacgccgtatttgtcacattgcgtgcat
acacaattccaacactgaaactgcatatttcttttctcctctatgcgcct
tggtgtgcccatggaacacgccccgcccacagCCGCTCCTACTGGCGCCG
GTGATTCTCATGTAACGGCGCATGTAACCCCTTACCCGACGACGAGGAGG
GGCAGATTGATCGACATCAGTCATCGACCCTACCACCACCATGACGGCCA
CTGCAGCGTTGCCGACAGCAGTAGCAGCACGAACAGCCCTGAGAAACAAG
AATCCTCCTCCTCCTCCTCCTCCCCCCCTTCCTCTTCCTCTTTCTCCCGC
ACCACGATCGTGACACGTATTGCTGCCGTGCACTGGCCCTCTTTCGGAAG
AAGCAACGGCCTGAGCAGCAGCAACAGCAGCAGCAGCAACGACAGTCCTT
CTTCGCTGCCTTCCCTTCCAGCCATACGCCCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCCGGCCCCCCCTCCATCTCCTCGT
TCTTGATACCGACAACCACTCTCTCTCTGAAGCCCTCTGGCGGGAAATAG
CCACCTTCCTTCCCCTCGTCGATCTCCTCCCCTTCTCCCGCCTATCCCGT
CGCGCGGCCTCCCTCCGTCCCTCCCTCCTTCGAACATGGCTCCGACAACG
GCATGGCATTCTCCTCGCGGAGAGAGGGAGGGAAGGAAGGGTTGAGAAAG
GGAGGGGCATGACTGCGCCTTACGTCTTGTCAATCCTGCGATTCGTCCAA
GGGGAGGTCATTCCCTGCAACCGTGCAGCGATGACAATGGCTCCTTCCCC
TTCTTCTCCTCCTCCTCCTCCTCCTACTCCTACTCCTACTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTGCTACTCATGCCGGGGCT
GCTGCTACTGCTGCTGTTGCTGCGGCTGCTGCTCCTCTTGCCATTTCTCC
TGCGTATACCCACCCCTCCTCCCTCGCAGTCGACGGAGGCATCGTCCCAC
TGCTCCCTCCTCCTGCCCCTCCTTCCCCTCCTCGCCCCCTCCCTCCCTCC
CTGCCTCCCCCTTTCCTTGCGCGTGCATTTGAGGGAGGGAGAGAACCGAA
CGCCCTGCACGTGACGTGGGCAGGACTGGCGTTCGGCCATCGTCGGTGGA
AGGAGGGAGGGAGGGGGGAGGAGGAGGGGGGGGAGGAAGAGGAGGAATTG
GAGAGTCTGCCGTGGCGGTCTATCGTGGgtgagtgggaagggaggaagag
ggagggagggagggagagggaaaggggggcaggagagggacacgtggagg
ataccaaggatccctcggctgcgaggaaggaaaaacgaatatgggcaaga
gggagggagggagggaggtaggggagactgttgatagtaagatgcatacg
tggacctgtacttgatgcatgttaccgacgaccccgcccgctctcccgcc
ctccctccctccctccctccctccctcccgctttcctttccccccttgat
gtcttcagGCTGGATCTCAATTCTCAAAACCCCGACCCGCACCGGACAAG
TGAAAATAGTTGCCAAATTTCCCTCCTCCTCCTCCTCCTCCTCCACCAAA
GGGGGGAGGGAGGGAGGAGGAGGATGGGGAGGAGGGGGGGTGACGTATAT
TTCGGTCTGGTTGGACTCACCCCAGCTGCTGCACAGTCGCATGATTACCT
TTTgtgagtctatgggggcaggggtgagggagggagggagggaaggaggg
agggagggctggaggaggagagggaggaggcatgcggaagccaaggagga
ttcgcgtccattgccccctatacatatataaaaagcattactcaaatcaa
ccaatcaaccatatcaatcaaacgcataatcgcacacactcgaacgcata
aaacaagtgatgcgtgtagcaggttggacggagtttggatgtcaatgcgc
ccttttagccatcattccttcgctctctttccctcactccccctcccaca
ggcaaaattttggtgtccaagaggcggtgtcaatgtgcctccatactcat
cactccttcgctctctttccctcactcacacacctacagGCGAAGCACAT
GCCAGGAGCCTCAAGCCGGGCGGAGAGTCCTGGATTTTCCACCGAGAAAT
GCCAACCGCCCGACGGGGAGAGTTAGGGACGACGAAGAATAAAGACCTGA
AGCAGGAGACACAGGAGCCGCAGGAGAGGTCGAGATCGACGAGGATGGGA
GGAAGGGGGAGGAGGAACCATGGGAGAGTTGGTGGGAGAAATAACAATTA
GACGTGAGCTTCTGTGAAGTGTTACAAAGGAGGGA
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protein sequence of NO05G00380.2

>NO05G00380.2-protein ID=NO05G00380.2-protein|Name=NO05G00380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MVATPYSPTPQVFSSTAAAAAAATAAAKVPQEEEQESLEHQKQEPESRAA
PTGAGDSHVTAHVTPYPTTRRGRLIDISHRPYHHHDGHCSVADSSSSTNS
PEKQESSSSSSSPPSSSSFSRTTIVTRIAAVHWPSFGRSNGLSSSNSSSS
NDSPSSLPSLPAIRPSSSSSSSSSSSSSSSRPPLHLLVLDTDNHSLSEAL
WREIATFLPLVDLLPFSRLSRRAASLRPSLLRTWLRQRHGILLAERGREG
RVEKGRGMTAPYVLSILRFVQGEVIPCNRAAMTMAPSPSSPPPPPPTPTP
TPPPPPPPPPPPLPPATHAGAAATAAVAAAAAPLAISPAYTHPSSLAVDG
GIVPLLPPPAPPSPPRPLPPSLPPPFLARAFEGGREPNALHVTWAGLAFG
HRRWKEGGRGEEEGGEEEEELESLPWRSIVGWISILKTPTRTGQVKIVAK
FPSSSSSSSTKGGREGGGGWGGGGVTYISVWLDSPQLLHSRMITFCESMG
AGVREGGREGGREGWRRRGRRHAEAKEDSRPLPPIHI*
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protein sequence of NO05G00380.1

>NO05G00380.1-protein ID=NO05G00380.1-protein|Name=NO05G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MVATPYSPTPQVFSSTAAAAAAATAAAKVPQEEEQESLEHQKQEPESRAA
PTGAGDSHVTAHVTPYPTTRRGRLIDISHRPYHHHDGHCSVADSSSSTNS
PEKQESSSSSSSPPSSSSFSRTTIVTRIAAVHWPSFGRSNGLSSSNSSSS
NDSPSSLPSLPAIRPSSSSSSSSSSSSSSSRPPLHLLVLDTDNHSLSEAL
WREIATFLPLVDLLPFSRLSRRAASLRPSLLRTWLRQRHGILLAERGREG
RVEKGRGMTAPYVLSILRFVQGEVIPCNRAAMTMAPSPSSPPPPPPTPTP
TPPPPPPPPPPPLPPATHAGAAATAAVAAAAAPLAISPAYTHPSSLAVDG
GIVPLLPPPAPPSPPRPLPPSLPPPFLARAFEGGREPNALHVTWAGLAFG
HRRWKEGGRGEEEGGEEEEELESLPWRSIVGWISILKTPTRTGQVKIVAK
FPSSSSSSSTKGGREGGGGWGGGGVTYISVWLDSPQLLHSRMITFCEAHA
RSLKPGGESWIFHREMPTARRGELGTTKNKDLKQETQEPQERSRSTRMGG
RGRRNHGRVGGRNNN*
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Synonyms
Publications