NO05G00310, NO05G00310 (gene) Nannochloropsis oceanica

Overview
NameNO05G00310
Unique NameNO05G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length480
Alignment locationchr5:127290..127769 -

Link to JBrowse

Properties
Property NameValue
DescriptionMyst esa1-associated factor 6-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:127290..127769 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000123histone acetyltransferase complex
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0016573histone acetylation
GO:0016043cellular component organization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR015418Hist_AcTrfase_NuA4_cplx
Homology
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BLAST of NO05G00310 vs. NCBI_GenBank
Match: XP_005855308.1 (myst esa1-associated factor 6-like protein [Nannochloropsis gaditana CCMP526] >EKU21050.1 myst esa1-associated factor 6-like protein [Nannochloropsis gaditana CCMP526] >EWM28361.1 Histone H4 acetyltransferase, NuA4 complex, Eaf6 [Nannochloropsis gaditana])

HSP 1 Score: 178.3 bits (451), Expect = 1.900e-41
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 0 
Query:   45 PGTNTKGLSPEMEEILREQARVDQLLGNLEAEIAKREDEYFEKTAHGNIVRGWDGVLDNKPPPKRRYEGRERVFTWSSYTYWARHGEGAFLAQQASETMLMGVGSQEMDDGGGG 159
            PG + KGLSPEMEEILREQARV+QLLG +EAEIAKRED+YFE+TAHGNIVRGW+GVLDNKPPPKRRYEGRERVFTWSSYTYW+RHG GA L +Q S+  L   GS+   DG  G
Sbjct:   46 PGLSNKGLSPEMEEILREQARVEQLLGQVEAEIAKREDDYFERTAHGNIVRGWEGVLDNKPPPKRRYEGRERVFTWSSYTYWSRHGAGAQLQKQTSDASL--DGSKGFADGEEG 157
The following BLAST results are available for this feature:
BLAST of NO05G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855308.11.900e-4176.32myst esa1-associated factor 6-like protein [Nannoc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003861NSK003861Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00310.1NO05G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100368g8gene2216Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00310.1NO05G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00310 ID=NO05G00310|Name=NO05G00310|organism=Nannochloropsis oceanica|type=gene|length=480bp
ATGTCCTTTTCTGGGGGCACTTTAGGGGGCAACAACGTGGCTTCGTTCCC
TTTACCCGCCTTCCCGCCTCCCCATTCCTCCTCCTCTTCCTCCTCCTCCT
CCGGCCACCCTTCCACCCTCCCCCACCTTCCCCCGGGCACCAATACCAAG
GGCCTGAGCCCCGAGATGGAGGAGATCTTGCGAGAGCAGGCCCGGGTGGA
TCAGCTCCTGGGGAACTTAGAGGCGGAGATTGCCAAGCGCGAGGACGAGT
ACTTTGAGAAGACGGCTCACGGAAACATCGTAAGGGGGTGGGATGGTGTC
CTAGATAACAAGCCTCCACCCAAGAGGAGGTACGAGGGGCGCGAGCGGGT
GTTCACCTGGTCGAGCTACACCTATTGGGCACGACACGGAGAAGGGGCCT
TCCTGGCACAGCAAGCGAGTGAGACCATGTTGATGGGAGTAGGGAGTCAG
GAGATGGATGATGGAGGAGGGGGGGGGTGA
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protein sequence of NO05G00310.1

>NO05G00310.1-protein ID=NO05G00310.1-protein|Name=NO05G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MSFSGGTLGGNNVASFPLPAFPPPHSSSSSSSSSGHPSTLPHLPPGTNTK
GLSPEMEEILREQARVDQLLGNLEAEIAKREDEYFEKTAHGNIVRGWDGV
LDNKPPPKRRYEGRERVFTWSSYTYWARHGEGAFLAQQASETMLMGVGSQ
EMDDGGGGG*
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Synonyms
Publications