NO05G00300, NO05G00300 (gene) Nannochloropsis oceanica

Overview
NameNO05G00300
Unique NameNO05G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2404
Alignment locationchr5:127067..129470 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:127067..129470 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00300 vs. NCBI_GenBank
Match: EWM28359.1 (hypothetical protein Naga_100368g7 [Nannochloropsis gaditana])

HSP 1 Score: 263.5 bits (672), Expect = 9.400e-67
Identity = 168/344 (48.84%), Postives = 201/344 (58.43%), Query Frame = 0 
Query:   13 TTRQ--VPIFALLLCLLQVHSSNSS--SSDPTPPSWGPIFTTSYLATDPAPFGTVSPLPLPYKGTWSYNWPLQRQRLEYTFWDMEGGGREGEKSVGKRRTLVELWRGHEEVYLFSPSDETCELIDLWPSFEPLSPEWLRKEAGKEGEGGREGGAKAALYRGQAYDVMRS-RNGSEMLVNADIWEEAREGGRENFSPPCPSMVAXXXXXXXXXXXXXXXXXXXXLARQAKGEVDIPLRLMGPVPTAGGREEEGREGG-------MVRAFFFSEFSTVPPSERSFALPSFCRNASVVIFPSKXXXXXXXXXXXXXXLLYRYGRRR--DLHAAFLSRRPVKGEEAEE 343
            TTRQ   P F L L  L V  + ++  S+ PTPPSWGP F+ +YLATDP+P G + P P  YKGTW Y+WPLQRQRLEY F++ E  G  G     K +TLVELWRGHEEVY+FSP+D +C L+DLWP F PLSP WL       G G  +   + ALYRG+AYDVMRS +NGSE+LV  + WE   EGG        P MVA                    + ++ +G+VD+PLR++GPVP  G    EG EG         VR F FS+FST PPSE  F LPS+CRNASVV+ P           XXXXX     GR R   LH AFL R    GE AEE
Sbjct:    4 TTRQQHTPFFLLCLFFLYVARARNTRDSTIPTPPSWGPTFSVAYLATDPSPVGRLPPFPFSYKGTWHYHWPLQRQRLEYNFYE-ESPGSTGAVE-RKEKTLVELWRGHEEVYVFSPTDRSCRLLDLWPDFTPLSPHWL------NGHGTGKKKGREALYRGRAYDVMRSVQNGSEVLVEVERWEGGAEGG---VGTAVPGMVA--------YFLSPPREDPGKVVQETRGKVDVPLRVLGPVPGWG----EGGEGXXXXXXEEAVRVFSFSDFSTQPPSENLFVLPSYCRNASVVVLPQ-----DMGEGXXXXXXXXXLGRLRVEALHTAFLGRGR-GGEAAEE 318
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BLAST of NO05G00300 vs. NCBI_GenBank
Match: XP_005855310.1 (50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526] >EKU21052.1 50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.1 bits (497), Expect = 1.800e-46
Identity = 97/169 (57.40%), Postives = 116/169 (68.64%), Query Frame = 0 
Query:   36 SSDPTPPSWGPIFTTSYLATDPAPFGTVSPLPLPYKGTWSYNWPLQRQRLEYTFWDMEGGGREGEKSVGKRRTLVELWRGHEEVYLFSPSDETCELIDLWPSFEPLSPEWLRKEAGKEGEGGREGGAKAALYRGQAYDVMRS-RNGSEMLVNADIWEEAREGGRENFSP 204
            S+ PTPPSWGP F+ +YLATDP+P G + P P  YKGTW Y+WPLQRQRLEY F++ E  G  G     K +TLVELWRGHEEVY+FSP+D +C L+DLWP F PLSP WL       G G  +   + ALYRG+AYDVMRS +NGSE+LV  + WE   EGG     P
Sbjct:   37 STIPTPPSWGPTFSVAYLATDPSPVGRLPPFPFSYKGTWHYHWPLQRQRLEYNFYE-ESPGSTGAVE-RKEKTLVELWRGHEEVYVFSPTDRSCRLLDLWPDFTPLSPHWL------NGHGTGKKKGREALYRGRAYDVMRSVQNGSEVLVEVERWEGGAEGGVNPLPP 197
The following BLAST results are available for this feature:
BLAST of NO05G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28359.19.400e-6748.84hypothetical protein Naga_100368g7 [Nannochloropsi... [more]
XP_005855310.11.800e-4657.4050s ribosomal protein l24 [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003860NSK003860Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00300.1NO05G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100368g7gene2217Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00300.1NO05G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00300 ID=NO05G00300|Name=NO05G00300|organism=Nannochloropsis oceanica|type=gene|length=2404bp
CCTCTCTAATCATTTTTTTCTTGTCTTCGACTCGGTTCCCTATGTTTACT
TTTTTTTTTCCTGCCTGCGTTGGATCAACTTTACATGGACATGTCGTCCT
CCTCCTCACTACTCTCCCCCCCCGCATACCCCCTTCGTTGCTGCTGCCGC
CTTTTCCTCTTCTTCGCCGCCATCACCTTAGGGTCTCTCGGGCTCGGAAT
GGTAAGAAACGATCGGCTCCGTCTCACCCCCCCCCTCCTCCATCATCCAT
CTCCTGACTCCCTACTCCCATCAACATGGTCTCACTCGCTTGCTGTGCCA
GGAAGGCCCCTTCTCCGTGTCGTGCCCAATAGGTGTAGCTCGACCAGGTG
AACACCCGCTCGCGCCCCTCGTACCTCCTCTTGGGTGGAGGCTTGTTATC
TAGGACACCATCCCACCCCCTTACGATGTTTCCGTGAGCCGTCTTCTCAA
AGTACTCGTCCTCGCGCTTGGCAATCTCCGCCTCTAAGTTCCCCAGGAGC
TGATCCACCCGGGCCTGCTCTCGCAAGATCTCCTCCATCTCGGGGCTCAG
GCCCTTGGTATTGGTGCCCGGGGGAAGGTGGGGGAGGGTGGAAGGGTGGC
CGGAGGAGGAGGAGGAAGAGGAGGAGGAATGGGGAGGCGGGAAGGCGGGT
AAAGGGAACGAAGCCACGTTGTTGCCCCCTAAAGTGCCCCCAGAAAAGGA
CATACGATGCTGTGATGGATTGGTGGTGTGTGTGTGTACGTGTGTGAGTA
TTGTGCGGGAGCTCAGGGACCGAATGAGGAGGGATGCGGACATGATGATG
CACGAAATGGTGTGATTGATGGCTGGACACACCTGTGATGGTGCATGAAT
TTGCCCGTCGTGACTCGCGCCTTGAAGCGGCACAAATGAGAGATAAAACG
AGATGCTTTACAGGTCTAACCCACCTCCCTCCTCCGCGTCATTATCTTGA
ACACCACCCGGCTTAATATCGACCCTTTACCCACTAAATACGTGCACAGA
GTCTTGTACAAGCCCAAGCCGATGGCGCTTCTTTTAGAAGCTGGTATGTC
GTTGAGAACGACAAGGCAAGTCCCCATCTTCGCACTGCTGCTGTGCCTCC
TTCAAGTCCACAGCAGCAACAGCAGCAGCAGCGACCCCACCCCACCGTCT
TGGGGCCCAATCTTTACCACATCATATCTAGCCACGgtatgtgacggatt
tgtttttctgggtcgtgggcaagtttcaatttgtgcttgatcctctccga
cccttcccttcgtccatccctcctcaccctccttccctcgccatccgcac
cagGACCCAGCCCCTTTCGGAACCGTCTCGCCCTTGCCCTTGCCCTACAA
AGGCACTTGGTCTTACAATTGGCCACTGCAACGCCAGCGTCTCGAATACA
CGTTTTGGGACATGGAGGGTGGAGGGAGGGAGGGAGAAAAGAGCGTAGGA
AAGCGGCGGACCCTTGTCGAGTTATGGCGCGGGCACGAGGAAGTTTATCT
GTTTTCGCCCTCGGATGAGACATGCGAATTAATTGATTTATGGCCATCAT
TTGAGCCGCTGTCCCCGGAATGGCTGCGGAAGGAGGCAGGGAAGGAGGGC
GAGGGAGGGAGGGAGGGAGGGGCAAAAGCCGCCTTGTACAGGGGGCAGGC
TTATGACGTTATGAGAAGCAGGAACGGAAGTGAGATGCTGGTAAATGCGG
ATATATGGGAAGAAGCAAGGGAGGGAGGACGGGAGAATTTTTCACCACCT
TGCCCCTCCATGGTGGCATACTTTCTATCGTCGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCGCTAGCTAGGCAGGCCAAGGGGG
AGGTAGACATCCCTCTTCGGTTGATGGGTCCCGTGCCAACAGCAGGAGGG
CGGGAAGAGGAGGGGAGGGAGGGAGGCATGGTGAGGGCCTTTTTCTTCAG
CGAGTTTTCGACGGTACCGCCGTCAGAGCGGTCGTTCGCCTTGCCCAGTT
TCTGTCGGAATGCGAGCGTGGTAATATTCCCTAGCAAGGAGGAGGAGGGG
AAGGACGAGGAGGAAGAAAGGAAAGGGGGACTGCTGTATCGGTATGGCCG
CAGGCGGGATCTTCACGCGGCGTTTCTGAGCCGGCGCCCCGTGAAAGGGG
AGGAGGCGGAGGAGTAGGGAGGGAGGGAGGGATGAAGCAAGAGAGAGGAG
ACTCTAACAAAGTACTCGGATATAAAGAAATATGAATAAGGTTATGGTGG
CGAACAACAAGAAGAACTTTAAGAAAAATAAAGAAAAAAAATAGAACAGC
TGTCATCTGTATGCCACATTGGGAGTCCCGTGTCTTGTGTGATGAGGGGC
ACGATGACTCCTGTCGGCTTCATTTGCTGGAAACGTCTTACACGTTGAAA
TGAG
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protein sequence of NO05G00300.1

>NO05G00300.1-protein ID=NO05G00300.1-protein|Name=NO05G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MALLLEAGMSLRTTRQVPIFALLLCLLQVHSSNSSSSDPTPPSWGPIFTT
SYLATDPAPFGTVSPLPLPYKGTWSYNWPLQRQRLEYTFWDMEGGGREGE
KSVGKRRTLVELWRGHEEVYLFSPSDETCELIDLWPSFEPLSPEWLRKEA
GKEGEGGREGGAKAALYRGQAYDVMRSRNGSEMLVNADIWEEAREGGREN
FSPPCPSMVAYFLSSQQQQQQQQQQQQQQPLARQAKGEVDIPLRLMGPVP
TAGGREEEGREGGMVRAFFFSEFSTVPPSERSFALPSFCRNASVVIFPSK
EEEGKDEEEERKGGLLYRYGRRRDLHAAFLSRRPVKGEEAEE*
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Synonyms
Publications