NO05G00290, NO05G00290 (gene) Nannochloropsis oceanica

Overview
NameNO05G00290
Unique NameNO05G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1376
Alignment locationchr5:125676..127051 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:125676..127051 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003863NSK003863Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00290.1NO05G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00290.1NO05G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00290 ID=NO05G00290|Name=NO05G00290|organism=Nannochloropsis oceanica|type=gene|length=1376bp
ATGGGCTGCCACCACCTGCGAAGGAGGGGGGGAGGAGGGGGAGGGAGGGA
GGGAGGAGGGGAGGGAGAACCCCTTTCTCCTATTCCCCCCTACGTGCCAC
GTGTCCCTTCTACTTCCTCTTCCTCCTCCTCCTCCTCCTCCACCACCGCC
ACCACTACTAATACCACCACTACCTCCTCCTCCTCCTCCTTTCCCTCCTC
TTCCTCCTTTCGCTTCTCCTTTTTGGGTGACCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCTCCTTCT
GCTGCTGCTCCTGCTGCTGCTGCTCCTCTTCTTCCTCCTCCTGTCTCTCC
TGCTGCTGCTGCTACCATTACTGCTACTACCACTGCCTCTTTCTTGAGTG
GCGACTGTCCCATTTGCTCTGAAGACAGGCGTCTTTGGCTCGACCTTAAC
TACTGCTGCTGCAGGgtaagcccgcccgcccgccctccctcccgccctcc
ctccctccctcgttccgatgccatctatatccagtcgtttcaactctgct
catcctccctccctccctccctccctccctccctccttcccaccctccct
ccccttcctccttccctccctcccgtattccccgcagTCTTCCCCTCTTC
CCCTCGACCCCTCCCACACCTTCCGACGCGCCCTCCTCCGCTGGCTGTAT
CATACCCGCCCTCCTCCCTTCCCTCCCTGCTTTCCCCCCTCCCTCGCCCT
CCCTTCAGTGGCATACAGCGTTCTCAAAGAGGCCATGACCCCCACGGCGC
TCGCGGTCCTGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGTGGGCGATGAGGGAGAGGGTGTCGACAATGTGTCAGCTGACGTT
GCAGGTCCTTAGGGGGGAGGGTGTTGTGTGGTTCGACCCGCGGGAGGGAG
GGAGGGAAGTGGTGCTCTTGTCATTTCCGTTAGTGGGCCAGCAGCTGCGG
GCCTGGTGGAATGCGGGAGGAGGGGGAGGAGGGACGGGGAGGAGGGGGAT
GGAAGGGGAGGAGTTGTTGGCGGCGTTGAGGGAGGATAGGGAAAGCATTT
TTTACCACGTGCCTGCGTCGAGGCTGTTAAGGTGCGTCGCTATCACGGAG
CTTTGGGGGGAGAAGGCCGTGGAGCTTCACATGACAGGAGAGAGGGAGGG
AAGGGTGGAGGGGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGCGAAGGAG
ACACAGGAGGAGGAGGACGAGGAGGGAGGGGAAAGGAAGGTTGGACGTCA
CATTCTGTAATCTATTGATTGTACCGGTAAAATGATGGTGTAAGTGCCTG
CAAAACAGGAGGATTTCAAACAAAGC
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protein sequence of NO05G00290.1

>NO05G00290.1-protein ID=NO05G00290.1-protein|Name=NO05G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MGCHHLRRRGGGGGGREGGGEGEPLSPIPPYVPRVPSTSSSSSSSSSTTA
TTTNTTTTSSSSSFPSSSSFRFSFLGDPAAAAAAAAAAAAAAPPPPPPPS
AAAPAAAAPLLPPPVSPAAAATITATTTASFLSGDCPICSEDRRLWLDLN
YCCCRSSPLPLDPSHTFRRALLRWLYHTRPPPFPPCFPPSLALPSVAYSV
LKEAMTPTALAVLGEGGREGGREGGREGWAMRERVSTMCQLTLQVLRGEG
VVWFDPREGGREVVLLSFPLVGQQLRAWWNAGGGGGGTGRRGMEGEELLA
ALREDRESIFYHVPASRLLRCVAITELWGEKAVELHMTGEREGRVEGGGG
EGGGGGGEGDTGGGGRGGRGKEGWTSHSVIY*
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Synonyms
Publications