NO05G00280, NO05G00280 (gene) Nannochloropsis oceanica

Overview
NameNO05G00280
Unique NameNO05G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1406
Alignment locationchr5:124225..125630 +

Link to JBrowse

Properties
Property NameValue
DescriptionCST complex subunit STN1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:124225..125630 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
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BLAST of NO05G00280 vs. NCBI_GenBank
Match: EWM28363.1 (hypothetical protein Naga_101590g2 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 1.600e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:   38 SHLWGLDPLFWTYIRALACHLVPPYLEYIEGFDFGPFFYGPHRRPVCKAMMMGTIVAVRQQKRQ 102
            SH WGLDPLFWTYIRALAC L PP+L+Y+EGFDFGPF  GP  RPVCKAM++GT+VAVRQ KRQ
Sbjct:   34 SHSWGLDPLFWTYIRALACILSPPHLQYLEGFDFGPFLLGPGERPVCKAMLVGTVVAVRQLKRQ 97
The following BLAST results are available for this feature:
BLAST of NO05G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28363.11.600e-2278.13hypothetical protein Naga_101590g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003864NSK003864Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00280.1NO05G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101590g2gene2214Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00280.1NO05G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00280 ID=NO05G00280|Name=NO05G00280|organism=Nannochloropsis oceanica|type=gene|length=1406bp
ATGGAAGAGGAGGACGAAGACGAGGATGAGGAAGCGGTAGCGCCGATGGA
GCAGACAAGGGAGCCGCCGCAGCAGCCACAGGAGGAGCAGCAGAAAGCGG
AGCCCCCACCCTCGCATCTATGGGGCTTGGACCCTCTCTTTTGGgtgaga
ccaggagaagaagaaatgaaatgtagagactagaaggaggagaagaaaga
aagaaagggaagacatagtgtggggacggggtaaaaagcttagttgacag
cctgagtcgccgtctcattcctccctccccttttttcggccctgtctccc
tgtctccctccttccttccctcccctagACCTATATCCGCGCTCTGGCTT
GCCATCTCGTCCCTCCCTACCTCGAGTACATCGAAGGCTTTGATTTCGGG
CCGTTTTTTTACGGTCCTCACAGACGGCCGGTGTGCAAGGCCATGATGAT
GGGGACCATCGTGGCAGTCCGGCAGCAAAAGCGGCAAGgtgagggaggga
gggagggtcgataggtttaaaaggatgtagaggagaaaggagtcgttgag
acattacctggcaggagacggtggtatttctttcattttctcaagtgcaa
accaccattcactccctttctccaccctcccttcctccccagTCGCCTTC
TGGCTTGACGACGGCACGGGTCTGATGCAATGCACCTTTTGGCCCCCAGA
CCTGGACGTGTTCGCACGTGATGATTTCCTCTACGGGGGAGGAGGGGAGG
GAGGGAGGGAAGGAGGGAAGGCGGTGGCCCGTGTGATGGAGAAGGTTGGG
GCCGGGGCTGGGTTTCGAAGGACGCGGGATAGCGGGCTGGATGATAGAGC
GTTCCAAGCGATTCAGGTGGGCCACTCGGTGGTGGTGCTGGGCGATCTGC
AGCATTACCGAGGgtgaggagaagggaagagagggggggggggaaggtgg
aggggtatgtgatgacagggcgtttcgggcgattaaaaatggtgctggag
aactgaagctcccttcccctccctccctccctccctctctctctgcctgt
tgtgtttacacacttcatccccctcctttctcattcattcctccgtcctt
ccctccctccatccctccctcagCATCACTTTTCTTAACGTGAAGGGCGA
CGTGCGCGAGGCCGAGGGTCCCCACGAGGAGGTTGCCCACTGGCTACAGG
CCGTTCACCTCAACGgtcaaatctactcccagccgtttcaggtcctccct
ctctccctccttctttccctctcccccttccgccttcccttcaccatctt
ctccgcattcctgggtttatcccctttaacttgctcatctttcctccctt
tccctccctccctccctccctccctccttccctcccttcttccctgccca
gCGTGA
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protein sequence of NO05G00280.1

>NO05G00280.1-protein ID=NO05G00280.1-protein|Name=NO05G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEEEDEDEDEEAVAPMEQTREPPQQPQEEQQKAEPPPSHLWGLDPLFWTY
IRALACHLVPPYLEYIEGFDFGPFFYGPHRRPVCKAMMMGTIVAVRQQKR
QVAFWLDDGTGLMQCTFWPPDLDVFARDDFLYGGGGEGGREGGKAVARVM
EKVGAGAGFRRTRDSGLDDRAFQAIQVGHSVVVLGDLQHYRGITFLNVKG
DVREAEGPHEEVAHWLQAVHLNA*
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Synonyms
Publications