NO05G00050, NO05G00050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G00050 vs. NCBI_GenBank
Match: EWM28399.1 (trafficking protein particle complex 1 [Nannochloropsis gaditana]) HSP 1 Score: 215.3 bits (547), Expect = 1.300e-52 Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 0 Query: 1 MIYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKN 116 MIYNLYIFDRRGACLFYREW RPLNTLAEDPEEE+KLMFGML+SIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFET+TGLRFVLNTDNSIVDMRGHLRHIY+ E V++ Sbjct: 75 MIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQD 189
BLAST of NO05G00050 vs. NCBI_GenBank
Match: CBJ33343.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 153.7 bits (387), Expect = 4.800e-34 Identity = 83/158 (52.53%), Postives = 108/158 (68.35%), Query Frame = 0 Query: 1 MIYNLYIFDRRGACLFYREWSRPLNTL--AEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157 MIYNLYIF+R+G CL+YREW+RP NTL A D EE++LMFGML+S+K +V + + A S GL+ L+T++YTLHH ET +GLRFVLNTDN+ D+R LR +Y+GI+VE+V K+PQ+ DG R PAF LEEY+ L FK Sbjct: 1 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADDGEEQRLMFGMLYSLKEVVTKMSTDPA---SAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVEYVAKHPQF-------NPVDGSPIR---LPAFDSRLEEYLRSLACFK 145
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_003388183.1 (PREDICTED: trafficking protein particle complex subunit 1-like [Amphimedon queenslandica]) HSP 1 Score: 129.0 bits (323), Expect = 1.300e-26 Identity = 64/153 (41.83%), Postives = 95/153 (62.09%), Query Frame = 0 Query: 3 YNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAF 156 YNLYIFDR +CLFYR+W++ + PEEERKL++GM++S+K L++ L + S+ DG T+ Y LH +ET TG +F+LNTD+ D++ L+HIY I+VE+V+KNP YK+G + + FV+ L+ Y+ P F Sbjct: 4 YNLYIFDRNCSCLFYRQWAK-VKECGISPEEERKLLYGMVYSLKSLLSRL---SPVSTRDGFIGYSTDKYKLHIYETPTGTKFILNTDHKAGDLQEMLQHIYTKIYVEYVIKNPHYKLGTTIDSQ------------LFVKELDNYIQSKPFF 140
BLAST of NO05G00050 vs. NCBI_GenBank
Match: OQR97867.1 (trafficking protein particle complex subunit [Achlya hypogyna]) HSP 1 Score: 128.6 bits (322), Expect = 1.700e-26 Identity = 61/157 (38.85%), Postives = 95/157 (60.51%), Query Frame = 0 Query: 1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157 MIYNLYIF+R GACL Y EW+R + ++ D EEE++LMFG++FS+K + + + +++ L +TNAYT HH ET +GLRF+L +DN+ D++ L+H+Y ++VE V KNP + D + F ++ +Y+ LP F+ Sbjct: 1 MIYNLYIFNRSGACLLYEEWNRSSDAISLSDAEEEKRLMFGLIFSLKEFLRKMAPSASATTAQSLKTFKTNAYTCHHMETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVH----------DATSTKPIKCKLFRHSVRQYMESLPCFR 147
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_008609466.1 (hypothetical protein SDRG_05525 [Saprolegnia diclina VS20] >EQC37304.1 hypothetical protein SDRG_05525 [Saprolegnia diclina VS20]) HSP 1 Score: 126.7 bits (317), Expect = 6.300e-26 Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = 0 Query: 1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157 MIYNLYIF+R GACL Y EW+R + + D EEE++LMFG++FS+K + + + +SS L +T+ YT HH ET +GLRF+L +DN+ D++ L+H+Y ++VE V KNP + D + F ++ +Y+ LP F+ Sbjct: 1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVH----------DAKSTKPIKCKLFRHSVRQYMESLPCFR 147
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_012199875.1 (hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65] >KDO29372.1 hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25 Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 0 Query: 1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157 MIYNLYIF+R GACL Y EW+R + + D EEE++LMFG++FS+K + + + +SS L +T+ YT HH ET +GLRF+L +DN+ D++ L+H+Y ++VE V KNP + D + F ++ Y+ LP F+ Sbjct: 1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVH----------DAKSTKPIKCKLFRHSVRHYMESLPCFR 147
BLAST of NO05G00050 vs. NCBI_GenBank
Match: GBG29519.1 (Trafficking protein particle complex subunit 1 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25 Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 0 Query: 2 IYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIK--------GLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTD--NSIV--DMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGL 153 IYN Y+FDRRG CLFY+EWSR N LA++P+E+ KL+FG+LFS+K G A + +AP + + TN +TLH +ET +GLRFVLNTD NS + +++ LR YA ++V VV+NP + GE E P+F + L+ + G+ Sbjct: 5 IYNFYVFDRRGVCLFYQEWSREHNPLADNPDEDAKLVFGLLFSLKQLGRKFSPGSGATTNAGDAPDTRGNMTSFSTNKFTLHQYETASGLRFVLNTDKCNSQICKNIQETLRSTYADLYVHMVVRNPMFTPGEPIEN------------PSFRKKLDAMMVGM 155
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_019625605.1 (PREDICTED: trafficking protein particle complex subunit 1-like [Branchiostoma belcheri]) HSP 1 Score: 125.6 bits (314), Expect = 1.400e-25 Identity = 67/154 (43.51%), Postives = 90/154 (58.44%), Query Frame = 0 Query: 2 IYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAF 156 ++NLYIFDR G CL Y EW+R EEE KLM+GMLFSIK ++ L + DG + +TN Y LH +ET +GL+FV+NTD + +MR L IY+ I+VE+VVKNP Y++G+ E F L+ +V GLP F Sbjct: 3 VFNLYIFDRNGTCLHYSEWNRKKQP-GMSREEEFKLMYGMLFSIKSFISRL---SPTDYKDGFLNYQTNKYKLHFYETPSGLKFVMNTDLAAGNMRETLHQIYSSIYVEYVVKNPLYELGQPIESE------------LFKAKLDNFVRGLPMF 140
BLAST of NO05G00050 vs. NCBI_GenBank
Match: ELT88724.1 (hypothetical protein CAPTEDRAFT_19288 [Capitella teleta]) HSP 1 Score: 124.0 bits (310), Expect = 4.100e-25 Identity = 67/154 (43.51%), Postives = 91/154 (59.09%), Query Frame = 0 Query: 2 IYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAF 156 +YNLYIFDR G CL+Y EW+R N EE KLM+GMLFSIK + + + DG +LRTN + LH +ET +GL+FVLNTD S+ ++R L IY+ I++E+V+KNP G+V E F L+++V GLP F Sbjct: 3 VYNLYIFDREGTCLYYHEWNR-RNQSGICKTEEYKLMYGMLFSIKSFCSRM---SPIDQKDGFMNLRTNKFKLHFYETPSGLKFVLNTDLSVGNIRDTLHQIYSSIYLEYVMKNPLCVQGDVIESE------------LFQTKLDDFVRGLPIF 140
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_008869063.1 (hypothetical protein H310_05967 [Aphanomyces invadans] >ETW02458.1 hypothetical protein H310_05967 [Aphanomyces invadans]) HSP 1 Score: 124.0 bits (310), Expect = 4.100e-25 Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 0 Query: 1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157 MIYN YIF+R GACL Y EW+R + + D EEE++LMFG++FS+K + + ++ + L +T+ YT HH ET +GLRF+L+TD + D++ L+H+Y ++VE V KNP + D G F +++ Y+ LP FK Sbjct: 1 MIYNFYIFNRSGACLMYEEWNRSSDAITLNDAEEEKRLMFGLIFSLKEFLRKMSPPSSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDCASGDLQDALQHMYGNLYVELVTKNPAH----------DARSGNPIKCKLFRASIKAYIESLPCFK 147 The following BLAST results are available for this feature:
BLAST of NO05G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G00050 ID=NO05G00050|Name=NO05G00050|organism=Nannochloropsis oceanica|type=gene|length=1082bpback to top protein sequence of NO05G00050.1 >NO05G00050.1-protein ID=NO05G00050.1-protein|Name=NO05G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bpback to top Synonyms
Publications
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