NO04G05140, NO04G05140 (gene) Nannochloropsis oceanica

Overview
NameNO04G05140
Unique NameNO04G05140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2433
Alignment locationchr4:1433202..1435634 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1433202..1435634 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO04G05140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007596NSK007596Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05140.1NO04G05140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660311gene_2301Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05140.1NO04G05140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05140 ID=NO04G05140|Name=NO04G05140|organism=Nannochloropsis oceanica|type=gene|length=2433bp
AACAGGCGAGTAACTCACAACACACATTCACCTCACACTCCTGTCTACTT
TTGCCCGCTATCCGAGAGGTGCAGACGCTACAATCAGCAACCCATCATCA
AGATGCCCTCTCTGCCTCCCGCCTCGCCTCCAGACGTCCAACTCTCCCCA
GCTCGTGCGAAGGAGGGCCCGACCGAAGTCGAAGACATGCCAGTGGCGGC
CAAGTCGGACGAAAAAGgtgagaggtagaggagctgctgccgctgcatgt
attggaacccggttctcattactgacgcgtgctccttccggtctaccaaa
cagTTGGAGTTTCGCCTTCCAGTTCGTCCGCTCCCCTGAGCTACGACCAC
ATGGATGAGACCGGGTTCAAGGACAGGCGAAGCAACGAGGAGGATGATGG
GGAGGACGATGAGGAGGAGGAAGATGGGAAGAAAAGCGCCCGTAGGGCGC
GTCTCAAGGCGGAGGGTGGGGGGGGAGACGAGATCGCGGAGGGGGAGGAT
GCCGCAATGGAGGAGGAGAAGGAAGGCGGGGAAGGACAGGAACGAGAGGA
GCAGCAGCAGGGCAAGAAGGAGGTGAATGATTGGACTTACGTGCACATAT
CGAACCTTCGCTTAAAAgtgagtgacccaaaggaatggaagccggaaaat
aggagggagggagggagggagggcaggaaaggatggacgacacagatgcg
gtgtcggagggcgatgccacgtgagtgatggaacaaattctcaattacga
tgacgcagacacaaatgtgtgaccatacatgccctttttcctcacatccc
tctcttcctccctccttctctccctccccatttcctcgtgcccccagACC
ACAGAGAGTGAGTTGGAAGCACTCTTCTCCTCCGTCGGTCCCCTCCTCTT
GTGCTACATTCGGCCTAAGCGCAGCGACCGGAGTGAGAGTCTCACGGGAC
TAGTCAGGTTTGAGAAGAAGGAGGATGCCGCGGCGGCCGTTACGAAGCTG
TGCGGgtgagatgggagggaggaagggagggagggagggaggaagggaag
gagaaagggaaggaggaagggagattctccgcatggctgcttggttgttg
atgtttttgactgaatctgcacacaaacttttcttattcctctccctcag
AGAACGTCTGCATGACCGTGTCCTCAAGCCCGAGCTTATCAACCGTCCGT
TTCTTTTCTTGGACGATAACGGCCGCCTGGTGGAGTCCAAGGGAAGGGAC
CGAGAGAAGGACAAGGAGCGGAAGGCAGCGCTTAAGGCGGCAGCGCGGCG
GGAAGGAGGGAGGGAGGGAGGGAGGGAAGCAGGGAGGGATCGACGGATGG
GGACGGGGAATGGCGGAGGAGGTTGGCGGGGGAGGGAGGGAGGGAGGGAG
AGGAGGGGGAGGGGGTGGTCACCTCCGGGGAGGAGGACGGGACGATCCAG
GTCACCTTTGCGGCGAGGACGCTCTCGGTCTTTTGAACGgtacgtccttc
tctcccttcttccctcccttcctcttcttttccctgtttctttcttcggg
ctgttcaaaggcaccaagcagtcactcgcccctccctccctccctccctc
cctccctccctccctccctcccttttgtccttctttttccccagcggtga
attcaagcgccaaaataccgcacacctgtcacttattcctccctccctcc
ctccctccctcccttcttcgcgcctttttccccctatctcttttcatgca
gGCAGGAAATCCGGCGGTTGGAGGAGGAGCGTTACCGGCTGGAGGAGGAG
AGGCGACGCTTGGAGGAGGAGCGACGACGATGGGCGTGGGAAAGGGAAGG
AGGCGGGAAGGGGAGAGGGAGGGAGGGAGGGAGGTGGATGGAGGGAGGGG
ATCGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGATGGCGG
GAGGGGGGAGAGAGGCTGCGTGGGGCAGTGGCAGTGGTGGCGGCGAGGGC
GGCAGGGAGGAGCCGAAGCAGGGAGAGGGAGAGGGGATGGGAGAGGGAGC
AGCAGCAGCACTATCATCATCACCATCAGGCCGCGTCTCATCATCTTCAC
CAGGGGAGGTGGTAGGGAGGGGAGCGGAGGGAGGGCAGGACGGACGAAGG
GCAGGGGAGAGGAGGAAGGGAGGGAGGGAGGAAGGGAGGGAGGATTCGAA
GAGGAGCAGGGGCCGGGCATTCCGAGAAGAAATATAATTTATAAGAGGAG
CAAGAGGAGGAAAAGGAAGGAAGGATGGCAAGGAGAGGAGGAGAAGAAGA
AAGAGAGGAAGGAAAACAGAAGAAAAAAAGCATGATGGTGATAACGAAGA
AAGAGAAGAAGGAAGAGAACAAAAACACTGGAACAAGAGAAGAGGATGGT
AAGGGGAACGAACGAAAGTAAGGAACCGCGGAA
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protein sequence of NO04G05140.1

>NO04G05140.1-protein ID=NO04G05140.1-protein|Name=NO04G05140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MPSLPPASPPDVQLSPARAKEGPTEVEDMPVAAKSDEKVGVSPSSSSAPL
SYDHMDETGFKDRRSNEEDDGEDDEEEEDGKKSARRARLKAEGGGGDEIA
EGEDAAMEEEKEGGEGQEREEQQQGKKEVNDWTYVHISNLRLKTTESELE
ALFSSVGPLLLCYIRPKRSDRSESLTGLVRFEKKEDAAAAVTKLCGERLH
DRVLKPELINRPFLFLDDNGRLVESKGRDREKDKERKAALKAAARREGGR
EGGREAGRDRRMGTGNGGGGWRGREGGRERRGRGWSPPGRRTGRSRSPLR
RGRSRSFERQEIRRLEEERYRLEEERRRLEEERRRWAWEREGGGKGRGRE
GGRWMEGGDRWEGGREGGREGGGWREGGERLRGAVAVVAARAAGRSRSRE
RERGWEREQQQHYHHHHQAASHHLHQGRW*
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Synonyms
Publications