Properties
Property Name Value
Description Unknown protein
Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1398844..1402675 +
Analyses
This gene is derived from or has results from the following analyses
Homology
BLAST of NO04G05030 vs. NCBI_GenBank
Match:
EWM28925.1 (hypothetical protein Naga_100142g11 [Nannochloropsis gaditana])
HSP 1 Score: 97.8 bits (242), Expect = 5.300e-17
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 192 VDRVRDRGVHHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQFKAGDMMMDRACRLK 265
VDRVRDR VHH RG + + ++++LP TD ECKFDV+ SV +R VC P E+C FQ++ GD+M+DR CRLK
Sbjct: 19 VDRVRDRVVHHAARGLASILRRVRSRLPSTDAECKFDVVTSVGERTTVCVPRETCAFQYRFGDVMLDRCCRLK 91
BLAST of NO04G05030 vs. NCBI_GenBank
Match:
CBJ32490.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 0
Query: 110 RLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCRLRTKETXXXXXXXXXXXXXXLKLVKAAWAGVVEGVGCVWLKVDRVRDRGVHHTVRGFKAAVG------NLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQFKAGDMMMDRACRLK 265
RL P +D CDWSW + +C P SC++K R GD GRSCRLR + G E C +R D + + F VG + +P TDK+C+F + S+ ++K+VC P C F +K GD+ R+CRL+
Sbjct: 110 RLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPE-------------------------GERELATC---DPERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRLR 242
BLAST of NO04G05030 vs. NCBI_GenBank
Match:
EWM25789.1 (hypothetical protein Naga_100021g75, partial [Nannochloropsis gaditana])
HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0
Query: 101 LSRLKSTFGRLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCRLRT 154
L L + R PS+ CDW W L+CAP C+F +LGD H+GRSCRLRT
Sbjct: 243 LGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRT 295
The following BLAST results are available for this feature:
BLAST of NO04G05030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (
BLASTP analysis of N. oceanica IMET1 genes )
Total hits: 3
500 1000 1500 2000 2500 3000 3500 Expect = 5.30e-17 / Id = 56.16 Expect = 1.10e-14 / Id = 32.30 Expect = 8.40e-7 / Id = 50.94 Sequence EWM28925.1 CBJ32490.1 EWM25789.1
Match Name E-value Identity Description
EWM28925.1 5.300e-17 56.16 hypothetical protein Naga_100142g11 [Nannochlorops... [more] CBJ32490.1 1.100e-14 32.30 conserved unknown protein [Ectocarpus siliculosus] [more] EWM25789.1 8.400e-7 50.94 hypothetical protein Naga_100021g75, partial [Nann... [more]
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Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence
>NO04G05030 ID=NO04G05030|Name=NO04G05030|organism=Nannochloropsis oceanica|type=gene|length=3832bp back to top protein sequence of NO04G05030.1
>NO04G05030.1-protein ID=NO04G05030.1-protein|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp back to top