NO04G05000, NO04G05000 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G05000 vs. NCBI_GenBank
Match: EWM28935.1 (protein kinase and ribonuclease, partial [Nannochloropsis gaditana]) HSP 1 Score: 310.8 bits (795), Expect = 1.900e-80 Identity = 219/352 (62.22%), Postives = 240/352 (68.18%), Query Frame = 0
Query: 590 LLIVGTVDGKVHAVGSTGEVVWAFDSGTPMVTSYQGYDLDPXXXXXXXXXXXXXXXXXXXXFPVLIPAVDGSLLVHTPGKGIQRLPLKASQLVERAPFLAADGRTLYTGARVSEALMVDVNTGVVVQRFSGPSAEKVAHIIDPRTHSPGTPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLLWLGKVEQSLRAVDAVTGHELWNLTVSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ--------------PHHNLLTPTQAAVLDVLGPGPGWGGMGPLIATPEGGLHRRDPSTGRIKLLAPLGAAPVSAFVVAPEGG 928
LLIVGTVDG VHAV S G V W+FDSG P+VTSYQGYD + FPVLIP VDGSLLVHTPGKGIQRLPL A QLV+RAPFLAADGRTLYTGAR SEALM+D++ G VVQRFSGPSAEK+AH+IDPR H TPT+ XXXXXXXXXXXXXXXXXXXXX RQLLWLG+VE LRAVD+++G ELWNLTVSE+ XXXXXXXXXXXXXXXXXX Q LLTPTQAA LDVLGPGPGWGG GPL+ATPEGG+HRRDP +G +LL LG+APV+AFVVAP GG
Sbjct: 114 LLIVGTVDGWVHAVDSAGGVAWSFDSGAPLVTSYQGYDHE-----------QPSSAPSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLH---TPTL-----AXXXXXXXXXXXXXXXXXXXXXRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLFPSGPLPASAFSXXXXXXXXXXXXXXXXXXGPSSGWSTRKLLSFAPDSKGGARQRLGPSTAALDWEGHRQGGLLTPTQAAALDVLGPGPGWGGAGPLVATPEGGVHRRDPGSGEARLLVALGSAPVTAFVVAPRGG 446
BLAST of NO04G05000 vs. NCBI_GenBank
Match: CBJ33405.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 85.5 bits (210), Expect = 1.300e-12 Identity = 68/206 (33.01%), Postives = 92/206 (44.66%), Query Frame = 0
Query: 599 KVHAVG-STGEVVWAFDSGTPMVTSYQGY--DLDPXXXXXXXXXXXXXXXXXXXXFPVLIPAVDGSLLVHTPGKGIQRLPLKASQLVERAPFLAADGRTLYTGARVSEALMVDVNTGVVVQRFSGPSAEKVAHIIDPRTHSPGTPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLLWLGKVEQSLRAVDAVTGHELWNLTVSE 802
+VHA+ STG + W+FD+G P+V SYQ LD LIP +DGS+LVHT +G++R LKA LVE+ PFL G YTG++VS VD TG V Q SG +A+ + S V +W+G+ + ++RA D TG E WNLT+ E
Sbjct: 100 EVHALDPSTGGLRWSFDTGEPLVKSYQQLPGTLDEKKW--------------------LIPTLDGSILVHTT-QGLRRPGLKARLLVEQTPFLDPKG-VFYTGSKVSRIFGVDARTGEVRQVLSGDTADSLESNRRLLARSGSDDDV-------------------------------IWIGRNDYTIRAFDVPTGQEEWNLTIGE 252
BLAST of NO04G05000 vs. NCBI_GenBank
Match: GAQ78686.1 (serine/threonine-protein kinase [Klebsormidium nitens]) HSP 1 Score: 73.2 bits (178), Expect = 6.800e-9 Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 0
Query: 588 EALLIVGTVDGKVHAV-GSTGEVVWAFDSGTPMVTSYQGYDLDPXXXXXXXXXXXXXXXXXXXXFPVLIPAVDGSLLVHTPGKGIQRLPLKASQLVERAPFLAADGRTLYTGARVSEALMVDVNTGVVVQRF 719
E+ L+V +DG +HA+ TGE+ W+F SG P+V++ + ++ ++ P DG+L + G G+Q+LP+ A +LV+ +P + DG + GAR S MVD +G ++++F
Sbjct: 67 ESTLLVAVLDGSLHALDADTGELKWSFSSGPPLVSASRRHNAVQRADEDRLGEPAESEKVEEEEEGMVFPGADGALYAYRRGHGVQKLPITARELVQASPSMTHDG-GIVVGARQSTVFMVDAASGKLLKKF 197
BLAST of NO04G05000 vs. NCBI_GenBank
Match: XP_002502437.1 (Endoribonuclease/protein kinase [Micromonas commoda] >ACO63695.1 Endoribonuclease/protein kinase [Micromonas commoda]) HSP 1 Score: 68.9 bits (167), Expect = 1.300e-7 Identity = 63/228 (27.63%), Postives = 92/228 (40.35%), Query Frame = 0
Query: 591 LIVGTVDGKVHAVG-STGEVVWAFDSGTPMVTSYQGYDLDPXXXXXXXXXXXXXXXXXXXXFPVLIPAVDGSLLVHTPGKG--------IQRLPLKASQLVERAPFLAADGRTLYTGARVSEALMVDVNTGVVVQRFSGPSAEKVAHIIDPRT------HSP-GTPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLLWLGKVEQSLRAVDAVTGHELWNLTVSEI 803
L+V +DG V AV S+GE +W F SG P+V +++ P P + P +DGSL + G + RLP+ A QLVE +P + DG + G R S VD TG +++ F V H + T SP G PT + ++G+ E +R+VD+ TG E WN+T E+
Sbjct: 50 LLVSLLDGTVRAVDRSSGETLWTFSSGGPLVQAHRSVSDGPDGGGGVAIRGRTN--------PTVFPGIDGSLYAYGGGXXXXXXGTGEVSRLPVTARQLVEASPSVTRDGGVV-MGTRRSVVFAVDKRTGELLRSFDTDGT--VVHGGNDDTGFFLSNESPTGDPT------------------------PNDVNDEAFYIGRTEYVVRSVDSSTGRERWNVTYGEV 242
BLAST of NO04G05000 vs. NCBI_GenBank
Match: XP_004333701.1 (Ribonuclease 25A protein [Acanthamoeba castellanii str. Neff] >ELR11688.1 Ribonuclease 25A protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 66.6 bits (161), Expect = 6.400e-7 Identity = 54/212 (25.47%), Postives = 87/212 (41.04%), Query Frame = 0
Query: 592 IVGTVDGKVHAV-GSTGEVVWAFDSGTPMVTSYQGYDLDPXXXXXXXXXXXXXXXXXXXXFPVLIPAVDGSLLVHTPGKG-IQRLPLKASQLVERAPFLAADGRTLYTGARVSEALMVDVNTGVVVQRFSGPSAEKVAHIIDPRTHSPGTPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLLWLGKVEQSLRAVDAVTGHELWNLTVSE 802
+V T DG+V+ V GSTGE +W+F SG + + P+LIP DGSL + G +++LP +V +PFLAADG TL+ G++ S+ ++++TG + S DP L++ + + ++RA++ +G E WN+TVSE
Sbjct: 91 VVATADGRVYGVEGSTGEQLWSFHSGRSLFSGSSS--------------QVAGGASGRSEDPLLIPGRDGSLYAYITSTGMLKKLPSSIKDMVNNSPFLAADG-TLFVGSKDSQIFTLELDTGSLASVHSTKGLSTQLVPADPDDDEKNA--------------------------------NQLFVMRTDYTVRAINHKSGEERWNVTVSE 255 The following BLAST results are available for this feature:
BLAST of NO04G05000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G05000 ID=NO04G05000|Name=NO04G05000|organism=Nannochloropsis oceanica|type=gene|length=4912bpback to top protein sequence of NO04G05000.1 >NO04G05000.1-protein ID=NO04G05000.1-protein|Name=NO04G05000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1296bpback to top Synonyms
Publications
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