NO04G04830, NO04G04830 (gene) Nannochloropsis oceanica

Overview
NameNO04G04830
Unique NameNO04G04830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2627
Alignment locationchr4:1319516..1322142 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1319516..1322142 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04830 vs. NCBI_GenBank
Match: EWM28883.1 (hypothetical protein Naga_100095g9 [Nannochloropsis gaditana])

HSP 1 Score: 233.4 bits (594), Expect = 2.100e-57
Identity = 123/257 (47.86%), Postives = 157/257 (61.09%), Query Frame = 0 
Query:   23 QRCIICL------DPQESATA------TGSTPNYQQCPIGGHIVCHKTCLDSLVLFNVSPERLRAYHGEIPCPWVNAEQGRQL-CPQRWHYRELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPNRHHLTEEAVQWQHQKR-------EDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCGLCLDQPGGGGARXXXXXXXXXXXXXLKEQAHAHVIGVHGQLFFQEDEILRQQNIFRMRRIV 260
            + C+ICL       P + A A      +  +  + QCPI G I+CH  CL+ LVLFNV+PERLRAYHG +PCPW++A   R+  C  RW YR+L  HLS ++Q++Y E +T F+RTLLG      R   T+  V    +K+       +DP V +AAAHI  ++L+L CP C  VF DFDACCAVTC ACG  FCGLC+  PGG   +              KE AHAHVI VHG+LF QE+EILRQQN+FR  R+V
Sbjct:   14 RHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARE--TDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKK----DGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLV 264
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BLAST of NO04G04830 vs. NCBI_GenBank
Match: XP_013754727.1 (hypothetical protein AMSG_09342 [Thecamonas trahens ATCC 50062] >KNC53050.1 hypothetical protein AMSG_09342 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-7
Identity = 48/155 (30.97%), Postives = 62/155 (40.00%), Query Frame = 0 
Query:   51 GHIVCHKTCLDSLVLFNVSPE---RLRAYHGEIPCPWVNAEQGRQLCPQRWHYRELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPN-RHHLTEEAVQWQHQKREDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCGLCL 202
            GH VC   C D  V   V+PE   + RA    I CP    E+G   C       E  T    +    ++          + E+                     E   VE AA H+ + +L+L CPSC T F D+D C A+ CGAC   FC LCL
Sbjct:  521 GHFVC-ALCFDQSVRVQVAPECLGQFRAAGARIVCPLFTGERGG--CTASPFTIEEVTGWGGEASRAFLAAREAVREGAMTERLEQEFEXXXXXXXXXXXXXXAESQEVERAALHVQNQILTLRCPSCTTAFFDYDGCAALRCGACQATFCALCL 672
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BLAST of NO04G04830 vs. NCBI_GenBank
Match: XP_004989348.1 (hypothetical protein PTSG_09987 [Salpingoeca rosetta] >EGD79263.1 hypothetical protein PTSG_09987 [Salpingoeca rosetta])

HSP 1 Score: 67.8 bits (164), Expect = 1.500e-7
Identity = 53/188 (28.19%), Postives = 73/188 (38.83%), Query Frame = 0 
Query:   25 CIICLDPQESATATGSTPNYQQCPIGGHIVCHKTCLDSLVLFNVSPERLRAYHGEIPCPWVNAEQGRQLCPQRWHYRELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPNRHHLTEEAVQWQHQK-------REDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCGLCLDQPG 206
            C IC D  +     G      +C  G H VC   C DSLV    + +   A   ++ CP  +           +  + LA H+  D          TF   +   K    R+   EE    Q ++       + D   E A  HIV ++ +L CP C+  F DFD C A+TC  C   FC  CL   G
Sbjct:  252 CCICFD--DDVPVVGGV----RCSTGDHFVC-DVCFDSLVTSVATHDERMARGSDVCCPTPDCSS------TPFKAKTLAMHVDDD----------TFQAWMKLNKDITGRNVRKEEEAARQAEEDRRARLSQMDRDAEDARKHIVENIFTLKCPRCSAAFVDFDGCFALTCAHCKCGFCAWCLTDRG 416
The following BLAST results are available for this feature:
BLAST of NO04G04830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28883.12.100e-5747.86hypothetical protein Naga_100095g9 [Nannochloropsi... [more]
XP_013754727.11.100e-730.97hypothetical protein AMSG_09342 [Thecamonas trahen... [more]
XP_004989348.11.500e-728.19hypothetical protein PTSG_09987 [Salpingoeca roset... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009292NSK009292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04830.1NO04G04830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298694gene_2270Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100095g9gene1730Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04830.1NO04G04830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04830 ID=NO04G04830|Name=NO04G04830|organism=Nannochloropsis oceanica|type=gene|length=2627bp
ATGGCGGAGAGGCTTTGCAACATTCAGTTCCCCAACCATCTTCTGCAGCA
GCAGGAGGAGCTGCAACAGCGATGCATAATTTGCTTGGACCCCCAGGAAA
GTGCTACTGCTACTGGATCCACCCCGAACTACCAGCAATGCCCCATCGGT
GGTCATATTGTCTGCCACAAAACATGCCTGGACTCCCTGGTGTTGTTTAA
TGTCTCACCTGAGCGCTTGCGGGCCTATCATGGTGAGATTCCTTGCCCCT
GGGTGAACGCGGAGCAAGGGAGGCAGCTGTGCCCCCAGCGTTGGCATTAT
CGAGAGTTGGCAACGCATTTGTCACCAGACGTGCAGCTCCGGTACGTGGA
GGGGGTCACGACGTTCATGCGCACCTTGCTTGGAGAAAAATATTATCCGA
ATCGCCATCATCTCACCGAAGAAGCGGTGCAGTGGCAACACCAGAAAAGA
GAAGATCCGCTTGTGGAAGCCGCAGCAGCACACATCGTGAGCGACCTACT
CAGCCTCCATTGTCCTTCATGCGCGACTGTCTTTGCCGACTTTGATGCTT
GCTGTGCAGTCACATGTGGGGCGTGCGGAACACATTTCTGCGGTCTCTGT
CTGGACCAACCGGGGGGGGGGGGCGCGAGGGAGGGAGGGCGCAAGGGAGG
GAGGGAGGGAGGGAGAAGCTTGAAGGAGCAGGCGCACGCGCATGTCATTG
GTGTACATGGGCAATTATTCTTCCAAGAGGATGAGATCTTGAGGCAACAG
AATATTTTTCGGATGAGGCGGATCGTGGAATATTTGCTGGAGGTCACCAC
AACCCCTTCCTCCGTCCCTCCCTCCGTTCCTCCATCTCTCGCTCCTGATA
CCAGCAGCAGCAGCACCACCACCACCAGCTGCACAACTTACTCTCGAGAA
GAAAGAAAAAAAGGGAAGCAAGAAGAGGAGAGTAAGGCCCTACAGTTTGT
GGCACAGGCCTTGACAAAGGTCGCTAAGGAGTGTGCGGCCTTGGAGATGG
ACGTACGAGAGATTGAGAGGATCTTTTATCGATATCGCCAACACCAGGCA
AGGGGAGATGACCAGGAGGGGGAGGAAGGGATGATAGTATTTAGGCCTCG
GCGTCCAAGTCGTCTGCGATTTGAGGATCTTATGGGGGAGGGAGAGAGGG
AGGGAAGGCTTGTCTTCCGGGAGGCAACACCCATTTTACGGTTGGCAGGT
GGGGAGAAGATGAATGTTACTGTTGTTGCTCCTGCTGCTACTGCTGTAAC
CTTATCTAGTGCAGCTGTCCTTCTTGCTGCTACTACTGCTGATGGTAGCG
CGCCAGCGGGCCCTGCTGCTGCTGCTGCTGCTACTGCTTGTACTTCTTCT
ACTGTGATGGCCCTTATCTCAGCATCGGCGGCTGCTGCTGCTGGCTTTTC
AGGGCCTGCAGGACATAGTTATGCAGTAGAGGGGGAAGGGATGAGGGAGG
GAGGAAAGGAGGAAGGGAAGGGCATGGATGAGGTGAACAGAAGGACGGAC
GAAGGGGAAGAGGAGGAGGAGGAGGAGCATGGGCATCGCCATCGTCGTCG
GCGGACGTTCAGCTTCCAATCCGAATGCCCGGATTCGATCTCTACGAATG
GTTGGAGTGCTTTCTCCTCCTTCTCTTCCTCCCTTTCTTCCTCGCCCTTG
TCTTCGCCTCTGCCACATTCTCTTTGGCCTGAGCGAGTCATGGAGGATGT
GGAGGAGGAGAAGGAAGAGATAATGGACGAGGAGGAAAATAAAGAGGCGA
AAGAGCAGCAGATCGTCGAAGGCGAGGATGAGAAGTATGAGGATGACGAG
GACGAGGAGGAGGAGGAAGAGGAGAAGGAGGAGGAGTCTTACTTCTATGA
GGAAGAGGGCGGCATCTCTCTGATGCAACACAGGGTAGGAAGAGGGAGGG
AGATAGAGAAGGGGGAAGACTTGAGCTTCTCTGTGTCTAAACAAGAGGAA
GGGATGGATGTAGTGGTTAGAACCAGTGAGGAAAAGGAGGAAGAGACAGA
GAGTAAGGGCGTGGCGGCGAATTATTTCACTTTTTGAGCCTCTCTTGCCA
ATTGGCCGACGGCGCCATCGACAGCCGAATGCGGAAGAGAGAGAGGCATA
GAGGAAGAGATAGAGGATGTATACATATATACACATATGTATATTTTCAT
CTGCCAGAATTCTGTCCTTGACGTGGACAAACTTTTGTTAAGGGAAGAGT
GAGTGCACGACAGACGAATGATTGCACTTTCCCACGACGGAACCAACTTC
ATATCGGAAGATATAATTAACCGAATATTTAGTGGAGAGACGATTTTCTG
AAGAAGGAAACAGGCTATATGGAGGGGAGTAAAGCGAATGATATGTCAGG
TAAAGTTAAGCGAGTAAATGGTGGTCGGAGCGCAAGGCTTGAGTGGAGTA
TAAGAGGATTAAGAAAAATATAAGTGCTAGCTAGAGGAGCGAAAAGCGAA
CATGAAAATTAATTATGATAGCGAGTGAGAGGTGGTTGGAGCGTAGATCT
TAAAAAGAGTGTAGGAGGTGAAATAGTGGCCCAAGCTAGATGGATAAAAT
GCAGACATAATCATAGATAGTGGAGGAAGTAGGTCGAGTACAGACACGCC
TCACAAAGAAAAAAGAGTAGATATACA
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protein sequence of NO04G04830.1

>NO04G04830.1-protein ID=NO04G04830.1-protein|Name=NO04G04830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=679bp
MAERLCNIQFPNHLLQQQEELQQRCIICLDPQESATATGSTPNYQQCPIG
GHIVCHKTCLDSLVLFNVSPERLRAYHGEIPCPWVNAEQGRQLCPQRWHY
RELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPNRHHLTEEAVQWQHQKR
EDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCGLC
LDQPGGGGAREGGRKGGREGGRSLKEQAHAHVIGVHGQLFFQEDEILRQQ
NIFRMRRIVEYLLEVTTTPSSVPPSVPPSLAPDTSSSSTTTTSCTTYSRE
ERKKGKQEEESKALQFVAQALTKVAKECAALEMDVREIERIFYRYRQHQA
RGDDQEGEEGMIVFRPRRPSRLRFEDLMGEGEREGRLVFREATPILRLAG
GEKMNVTVVAPAATAVTLSSAAVLLAATTADGSAPAGPAAAAAATACTSS
TVMALISASAAAAAGFSGPAGHSYAVEGEGMREGGKEEGKGMDEVNRRTD
EGEEEEEEEHGHRHRRRRTFSFQSECPDSISTNGWSAFSSFSSSLSSSPL
SSPLPHSLWPERVMEDVEEEKEEIMDEEENKEAKEQQIVEGEDEKYEDDE
DEEEEEEEKEEESYFYEEEGGISLMQHRVGRGREIEKGEDLSFSVSKQEE
GMDVVVRTSEEKEEETESKGVAANYFTF*
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Synonyms
Publications