NO04G04800, NO04G04800 (gene) Nannochloropsis oceanica

Overview
NameNO04G04800
Unique NameNO04G04800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1638
Alignment locationchr4:1309760..1311397 +

Link to JBrowse

Properties
Property NameValue
DescriptionAcyl-coenzyme a thioesterase 13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1309760..1311397 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom
Vocabulary: Molecular Function
TermDefinition
GO:0047617acyl-CoA hydrolase activity
Homology
BLAST of NO04G04800 vs. NCBI_GenBank
Match: EWM28873.1 (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana])

HSP 1 Score: 374.8 bits (961), Expect = 3.700e-100
Identity = 213/404 (52.72%), Postives = 263/404 (65.10%), Query Frame = 0
Query:   34 QDITSRKILQLMRELSHSAFSGVLLHGNKGSNDNP-HSLETLDIGPGPHVRVRLCVPPHLCD----SNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPLVHFLVSTLYLPVLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARRE--IKVDVNQLLDLQNFLIIHHPSSPSS------SSSPFCYEATASFFVAPAVCNSFGSLHGGAVAMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTELLLVIKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIPSSYRVWFTRKSDGRYLTQSHVLFD 425
            Q+ TSR++L+L+  +S SAFSGVLL  +   N     +++ L IGPGP VR+RL VP HLCD    ++ LL++GA+ AWFDEVSSW FVSADGRHRPGVSVSLNTTVL WV  G+EVEI+SHCKK+G+TLGFADM+L DVATG+ELA GRHVKFLKMG  W VAMH WAFPL + + S + LP +R                                  + R E    V++N+LL L NF  ++ P+  +S      +S P   EA+ASF V P VCNSFGSLHGGA A+LAERAAL LY QAARWAG+  +  L R R+LS+DYMSPC KNTELLL+++G++ +R        S    +   L  A     +G L IP SY+V FTRK DGRYLTQ HVL D
Sbjct:   18 QERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVR----------------QRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNF-HVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPH--PQGNL-IPMSYQVLFTRKKDGRYLTQCHVLLD 401          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: XP_005853925.1 (thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526] >EKU22436.1 thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 244.2 bits (622), Expect = 7.600e-61
Identity = 119/186 (63.98%), Postives = 145/186 (77.96%), Query Frame = 0
Query:   34 QDITSRKILQLMRELSHSAFSGVLLHGNKGSNDNP-HSLETLDIGPGPHVRVRLCVPPHLCD----SNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPLVHFLVSTLYLPVLR 215
            Q+ TSR++L+L+  +S SAFSGVLL  +   N     +++ L IGPGP VR+RL VP HLCD    ++ LL++GA+ AWFDEVSSW FVSADGRHRPGVSVSLNTTVL WV  G+EVEI+SHCKK+G+TLGFADM+L DVATG+ELA GRHVKFLKMG  W VAMH WAFPL + + S + LP +R
Sbjct:   18 QEQTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPRVRLRLRVPSHLCDNYDNNHCLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVR 203          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: EWM27338.1 (Thioesterase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 2.400e-14
Identity = 78/278 (28.06%), Postives = 117/278 (42.09%), Query Frame = 0
Query:   88 VPPHLC---DSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNT--WAVAMHPWAFPLVH-FLVSTLYLPVLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIARREIKVDVNQLLD---LQNFLIIHHPSSPSSSSSPFCYEATASFFVAPAVCNSFGSLHGGAVAMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTEL 357
            +  +LC   +    L++G I A FDE+S+   +  D  HRPGVSV+L+  V+  +  G  + +++   K+G +L F  + LRD A+ + +A G+H K+L M     W +A  P  +P+V   L+      V  G                                    R    D + + D   L N  +     S             AS  V P  CN    +HGGA+A+ AE  ALL    AAR   KE  +Q  RAR LS+ Y+    +  +L
Sbjct:   58 ITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATG-----------------------------------ERVNTHDASSIFDHFPLDNLTL--ENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGALAVAAEEIALL--DVAAR--KKESTSQAPRARALSLHYLQANDRVVDL 294          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: KMZ72612.1 (Thioesterase family protein [Zostera marina])

HSP 1 Score: 76.3 bits (186), Expect = 2.700e-10
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 0
Query:   86 LCVPPHLCDSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGN 188
            + VPP L +S A L+ GA M+  D + S   ++A     PGVS+ ++ + L   +AG E+EIE+   + G+++GF  + +R   TG+ +A GRH K+L + +
Sbjct:   58 MTVPPRLLNSGAFLHGGATMSLVDLIGSAALIAAG--KPPGVSIEISASYLDAAFAGEEIEIEATVLRAGNSIGFVTVEIRQKKTGKLIAKGRHTKYLTISS 157          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: GAX29506.1 (hypothetical protein FisN_3Hh024 [Fistulifera solaris])

HSP 1 Score: 70.5 bits (171), Expect = 1.500e-8
Identity = 57/177 (32.20%), Postives = 84/177 (47.46%), Query Frame = 0
Query:   41 ILQLMRELSHS-AFS---GVLLHG-NKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSE-VEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMG--------NTWAVAMHPWAFPLVHF 204
            +L+L+ +L  S  FS   G   H     S+ +  S++  D   G  VRV L V   L   +  +     MA  D+++++  ++ DG  RPGVSV +N    G + +  E + I +  +KVG  LGF    +RD AT R +  G H+KFL MG          W V    W + L HF
Sbjct:   12 VLKLIHKLEPSPGFSQALGTTFHDLTSSSSASSSSIQVED--KGSTVRVELPVNSSLYIESKSITLSTYMAIMDDLTTYSLMTVDG-GRPGVSVFMNMETTGSLLSSVERLAITARTRKVGRNLGFTSAEIRDAATNRMICHGSHIKFLPMGFLADYLLQYGWPVIQ--WWYGLSHF 183          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: XP_003389589.1 (PREDICTED: acyl-coenzyme A thioesterase 13-like [Amphimedon queenslandica])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0
Query:   99 LNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFL 184
            L+ G      D VS+W  VSA+  H PGVS  LN + +     G  V I++ C KVG TL FA + L +  TG+ +A GRH K++
Sbjct:   57 LHGGLTATIIDSVSTWAIVSAE--HPPGVSTDLNISYMRPAKIGETVIIDAECLKVGKTLAFASVSLLNKDTGKLIAQGRHTKYI 139          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: XP_021853154.1 (acyl-coenzyme A thioesterase 13 [Spinacia oleracea] >KNA03064.1 hypothetical protein SOVF_212720 [Spinacia oleracea])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0
Query:   69 HSLETLDIGPGPHVRVRLCVPPHLCDSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGN 188
            H L    I PG  V   + VPP L ++   L+ GAI +  D V S   +   G    GVSV +N + L    A  E+EIE    +VG +L    + LR  A+G+ +A GRH K+L + +
Sbjct:   39 HGLRVDLIEPG-RVLCSINVPPRLLNTANTLHGGAIASLVDLVGS-AVIYTVGAPSTGVSVEINVSYLDAALADEEIEIEGKALRVGKSLAVVSVELRKKASGKIVAQGRHTKYLPVSS 155          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: GAV78411.1 (4HBT domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:   88 VPPHLCDSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGN 188
            +PP L ++   L+ GA     D V S   +   G    GVSV +N + L   +A  EVEIE+   +VG  +G   + LR  ATG+ +A GRH K+L   N
Sbjct:   57 IPPRLLNAGNFLHGGATATLVDLVGS-AVIYTLGAPMTGVSVEINVSYLDAAYADEEVEIEAKALRVGKAVGVVSVELRKKATGKIIAQGRHTKYLAAHN 155          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: XP_022009113.1 (acyl-coenzyme A thioesterase 13-like [Helianthus annuus])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:   88 VPPHLCDSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGN 188
            VPP L + +  L+ GAI A  D V    F + +     GVS+ +N + L     G E+EIE+   +VG  +  A +  R+  TG+ +A GRH K+  + +
Sbjct:   54 VPPRLLNVDNSLHGGAIAALVDVVGGTAFPTINNNTNTGVSMEINVSYLDAACVGDEIEIETKALRVGKAVAVASVEFRNKKTGKVIAQGRHTKYFAVSS 153          
BLAST of NO04G04800 vs. NCBI_GenBank
Match: KRT81508.1 (hypothetical protein AMK59_5515 [Oryctes borbonicus])

HSP 1 Score: 67.0 bits (162), Expect = 1.700e-7
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 0
Query:   57 LLHGNKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLNSGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESHCKKVGDTLGFADMVLRDVATGRELATGRHVKFL 184
            LL  +KG + + H+++ L  G G  ++  L V     +    L+ G      D +SS G +S +   +P VSV++N   L     G  VEI ++  KVG +L F  + L++ ATG  LA G H KFL
Sbjct:   10 LLLNSKGFDTHCHAVKILTAGNG-SIKAELKVANEHVNILGGLHGGYTATLVDVISSLGLLSHEKGLKPSVSVNMNINYLSGAKEGDTVEIFANTLKVGKSLAFLQVELKNKATGVLLAKGSHTKFL 135          
The following BLAST results are available for this feature:
BLAST of NO04G04800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM28873.13.700e-10052.72acyl-coenzyme a thioesterase 13 [Nannochloropsis g... [more]
XP_005853925.17.600e-6163.98thioesterase superfamily member 2 [Nannochloropsis... [more]
EWM27338.12.400e-1428.06Thioesterase superfamily [Nannochloropsis gaditana... [more]
KMZ72612.12.700e-1035.29Thioesterase family protein [Zostera marina][more]
GAX29506.11.500e-832.20hypothetical protein FisN_3Hh024 [Fistulifera sola... [more]
XP_003389589.11.300e-741.18PREDICTED: acyl-coenzyme A thioesterase 13-like [A... [more]
XP_021853154.11.300e-735.29acyl-coenzyme A thioesterase 13 [Spinacia oleracea... [more]
GAV78411.11.300e-737.004HBT domain-containing protein [Cephalotus follicu... [more]
XP_022009113.11.300e-733.00acyl-coenzyme A thioesterase 13-like [Helianthus a... [more]
KRT81508.11.700e-733.86hypothetical protein AMK59_5515 [Oryctes borbonicu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009295NSK009295Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04800.1NO04G04800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G04800.2NO04G04800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298533gene_2267Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100095g12gene1732Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04800.1NO04G04800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G04800.2NO04G04800.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04800 ID=NO04G04800|Name=NO04G04800|organism=Nannochloropsis oceanica|type=gene|length=1638bp
ATCAGGCATATCAAGCCATTAGGACGCTGCAGCGGTCCCTTGGTAGGCAT
GGCTCCTTCATCAGCCTCCTTCAAAGCACTGTTACCATTGGCCTCAACAT
TCCAGACGACGACATGCTGTGAAGCAACTACACCCCGGGCCTCCGACCAG
GACATCACCAGCCGCAAGATCCTCCAGCTCATGCGCGAACTTTCCCACAG
TGCCTTCTCCGGTGTCCTTTTGCATGGTAACAAAGGTTCAAATGACAACC
CGCACTCCCTCGAAACCCTTGACATCGGCCCAGGGCCCCATGTCCGTGTA
CGGCTTTGCGTCCCTCCTCATCTCTGCGATAGTAATGCCTTATTAAATTC
CGGGGCGATCATGGCCTGGTTTGATGAGGTATCATCGTGGGGATTCGTTT
CGGCTGATGGTCGGCATCGGCCAGGCGTTAGTGTCAGCTTGAATACCACT
GTGCTCGGATGGGTGTGGGCAGGGTCCGAGGTGGAAATTGAGTCGCACTG
CAAGAAGGTGGGGGACACGCTGGGCTTTGCAGACATGGTGCTACGAGATG
TGGCGACTGGAAGGGAGgtatgtagccgttggtgggaaagagggggaggg
gacgtgtcatcttaaacatactgcttatcctcttcttccttccttcttcc
ctcctcttcttccagCTCGCCACTGGTCGGCACGTTAAATTTTTGAAAAT
GGGAAATACTTGGGCAGTGGCCATGCACCCATGGGCTTTTCCTCTTGTGC
ACTTCCTGGTGTCTACCCTTTATCTACCAGTATTACGAGGAGGAGAAGGA
GGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGGAGGCGGAAA
GAAGGGCAATCAGCACCCTGACTCGGAGGGAGGGGCAGTCATTGCACGGC
GGGAAATTAAAGgtagggtggtacatgtccgggaatttggaagggtagta
gtgcgtaaccttatcgttctcccacacttgctcacgtctccaatcctcct
tctctcccttcctccctcactccctccctctccagTCGACGTCAACCAAC
TGCTCGACTTGCAAAACTTCCTCATCATCCACCATCCCTCCTCTCCTTCT
TCCTCCTCATCACCCTTCTGCTACGAAGCTACCGCCAGCTTTTTCGTGGC
CCCTGCAGTGTGTAATAGCTTCGGTTCTTTACATGGAGGAGCCGTTGCTA
TGCTCGCGGAGCGTGCCGCCCTCCTCCTGTACCAACAAGCCGCGCGATGG
GCAGGGAAGGAGGGAGAGACACAGTTAGCGAGGGCACGGACATTGAGTGT
GGACTACATGTCGCCATGCAGCAAGAACACGGAGTTGCTGCTGGTGATCA
AAGGCATAAAGTCCGACCGACCTCCCTCCACCTTTGTTTCCTCCTCTTGG
CCCTCCTGTATGGTTTCCAAGCTCTCGTCTGCCTCATCCTCAGCGGAGAA
AGGGAAGCTTTTTATTCCTTCATCCTACCGCGTGTGGTTTACGCGCAAGA
GCGACGGGCGATACTTGACCCAGAGCCATGTCCTGTTCGATGTAGGTAGA
ATGGAGGAGGAAGGCAGGCGGCGGAGAATGGCGCGATTGTAAAACTACGA
ACAAAAAAGAAAAGAAAGTGTTGATTATGATTCTGGCA
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protein sequence of NO04G04800.1

>NO04G04800.1-protein ID=NO04G04800.1-protein|Name=NO04G04800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MAPSSASFKALLPLASTFQTTTCCEATTPRASDQDITSRKILQLMRELSH
SAFSGVLLHGNKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLN
SGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESH
CKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPL
VHFLVSTLYLPVLRGGEGGGGGGGGGGGGGGGGGKKGNQHPDSEGGAVIA
RREIKVDVNQLLDLQNFLIIHHPSSPSSSSSPFCYEATASFFVAPAVCNS
FGSLHGGAVAMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPC
SKNTELLLVIKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIP
SSYRVWFTRKSDGRYLTQSHVLFDVGRMEEEGRRRRMARL*
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protein sequence of NO04G04800.2

>NO04G04800.2-protein ID=NO04G04800.2-protein|Name=NO04G04800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MAPSSASFKALLPLASTFQTTTCCEATTPRASDQDITSRKILQLMRELSH
SAFSGVLLHGNKGSNDNPHSLETLDIGPGPHVRVRLCVPPHLCDSNALLN
SGAIMAWFDEVSSWGFVSADGRHRPGVSVSLNTTVLGWVWAGSEVEIESH
CKKVGDTLGFADMVLRDVATGRELATGRHVKFLKMGNTWAVAMHPWAFPL
VHFLVSTLYLPVLRGGEGGGGGGGGGGGGGGGGGKKGNQHPDSEGGAVIA
RREIKGRVVHVREFGRVVVRNLIVLPHLLTSPILLLSLPPSLPPSPVDVN
QLLDLQNFLIIHHPSSPSSSSSPFCYEATASFFVAPAVCNSFGSLHGGAV
AMLAERAALLLYQQAARWAGKEGETQLARARTLSVDYMSPCSKNTELLLV
IKGIKSDRPPSTFVSSSWPSCMVSKLSSASSSAEKGKLFIPSSYRVWFTR
KSDGRYLTQSHVLFDVGRMEEEGRRRRMARL*
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Synonyms
Publications