NO04G04680, NO04G04680 (gene) Nannochloropsis oceanica

Overview
NameNO04G04680
Unique NameNO04G04680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1325
Alignment locationchr4:1275698..1277022 -

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Properties
Property NameValue
DescriptionNadh ubiquinone oxidoreductase b22-like subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1275698..1277022 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006120mitochondrial electron transport, NADH to ubiquinone
GO:0006091generation of precursor metabolites and energy
Vocabulary: Cellular Component
TermDefinition
GO:0005747mitochondrial respiratory chain complex I
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR033034NDUFB9
IPR008011Complex1_LYR
Homology
BLAST of NO04G04680 vs. NCBI_GenBank
Match: EWM28859.1 (nadh ubiquinone oxidoreductase b22-like subunit [Nannochloropsis gaditana])

HSP 1 Score: 275.0 bits (702), Expect = 1.400e-70
Identity = 134/152 (88.16%), Postives = 145/152 (95.39%), Query Frame = 0
Query:    1 MANASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEELHEEPINIDMTPVVKGEKGDGRVLVDSANKA 153
            MANASMRAAAAQYINPA +LSHKT V+RLYRKSLKTLNSWAIDREVFLSEA K+R+ FS+NAHLAPESGKVKALVR+A E+LL +SHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPE++ EEP+NIDMTPVVKGEKGDGRVLVDSANKA
Sbjct:    1 MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKA 152          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: GAY05335.1 (Hypothetical protein PINS_013139 [Pythium insidiosum] >GAY00874.1 Hypothetical protein PINS_008729 [Pythium insidiosum])

HSP 1 Score: 153.3 bits (386), Expect = 6.200e-34
Identity = 82/151 (54.30%), Postives = 104/151 (68.87%), Query Frame = 0
Query:    7 RAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAY 154
            R   A+  NP  KLSHK TV RLY++SLKTL+SW IDR ++  EA KIR++F S+  L P SG VK LVREA+EKL  ++HPD+Y+  +MPGGT FMRNPP+P DV F  G++PE++   P   INIDMTP +   KG   V VD + K Y
Sbjct:   12 REVVARVANPVEKLSHKQTVTRLYKQSLKTLDSWVIDRRLWNEEATKIRAQFDSHKALDPNSGLVKRLVREAEEKLEKYTHPDRYVFNYMPGGTRFMRNPPIPLDVCFPDGNIPEDVEVSPLEAINIDMTP-LPARKG---VFVDFSKKGY 158          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: XP_024577352.1 (NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Plasmopara halstedii] >CEG40983.1 NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Plasmopara halstedii])

HSP 1 Score: 147.5 bits (371), Expect = 3.400e-32
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAY 154
            N + R    +++N   +LSHK TV RLY+KSLKTL+SW IDR ++  EA KIR+EF +N  L P+SG  K LVREAQEK+  ++HPD+YI  +MPGG+L+MRN P+P DV F  G +P+++   P   INIDMTP+   E     V VD + K Y
Sbjct:   11 NQTFREVVGRFVNAPPQLSHKQTVQRLYKKSLKTLDSWIIDRRLWNEEATKIRAEFDANKKLDPQSGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGIIPDDVEVSPLEGINIDMTPLPAKE----TVFVDFSKKGY 161          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: XP_002903122.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55546.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 146.4 bits (368), Expect = 7.600e-32
Identity = 77/155 (49.68%), Postives = 103/155 (66.45%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAY 154
            N + R    +++    +LSHK  V R+Y+KSLKTL+SW IDR ++  EA KIR+EF +N+ L PESG  K LVREAQEK+  ++HPD+YI  +MPGG+LFMRN P+P DV F  G++PE++   P   INIDMTP+         V VD + K Y
Sbjct:   11 NKTFREVVGRFVGAPPQLSHKQKVQRVYKKSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDVELSPLEGINIDMTPL----PAKDTVFVDFSKKGY 161          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: XP_008911262.1 (hypothetical protein PPTG_15717 [Phytophthora parasitica INRA-310] >ETI37986.1 hypothetical protein F443_16169 [Phytophthora parasitica P1569] >ETK78181.1 hypothetical protein L915_15725 [Phytophthora parasitica] >ETL31622.1 hypothetical protein L916_15616 [Phytophthora parasitica] >ETL84863.1 hypothetical protein L917_15436 [Phytophthora parasitica] >ETM38020.1 hypothetical protein L914_15573 [Phytophthora parasitica] >ETN03489.1 hypothetical protein PPTG_15717 [Phytophthora parasitica INRA-310] >ETO66765.1 hypothetical protein F444_16152 [Phytophthora parasitica P1976] >ETP07868.1 hypothetical protein F441_15997 [Phytophthora parasitica CJ01A1] >ETP35903.1 hypothetical protein F442_16020 [Phytophthora parasitica P10297] >KUF79103.1 NADH dehydrogenase 1 beta subcomplex subunit 9 [Phytophthora nicotianae])

HSP 1 Score: 146.0 bits (367), Expect = 9.900e-32
Identity = 77/155 (49.68%), Postives = 103/155 (66.45%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAY 154
            N + R    +++    +LSHK  V RLY++SLKTL+SW IDR ++  EA KIR+EF +N+ L PESG  K LVREAQEK+  ++HPD+YI  +MPGG+LFMRN P+P DV F  G++PE++   P   INIDMTP+         V VD + K Y
Sbjct:   11 NKTFREVVGRFVGAPPQLSHKQKVQRLYKQSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDVELSPLEGINIDMTPL----PAKDTVFVDFSKKGY 161          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: XP_009530932.1 (hypothetical protein PHYSODRAFT_562177 [Phytophthora sojae] >EGZ13503.1 hypothetical protein PHYSODRAFT_562177 [Phytophthora sojae])

HSP 1 Score: 145.2 bits (365), Expect = 1.700e-31
Identity = 76/155 (49.03%), Postives = 103/155 (66.45%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAY 154
            N + R    +++  A +LSHK  V RLY++SLKTL+SW IDR ++  EA KIR++F +N  L PESG  K LVREAQEK+  ++HPD+YI  +MPGG+LFMRN P+P DV F  G++P+++   P   INIDMTP+         V VD + K Y
Sbjct:   11 NKTFREVVGRFVGAAPQLSHKQKVQRLYKQSLKTLDSWVIDRRLWNEEATKIRAQFDANRELDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPDDVELSPLEGINIDMTPL----PAKDTVFVDFSKKGY 161          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: OWZ12573.1 (Nadh ubiquinone oxidoreductase [Phytophthora megakarya])

HSP 1 Score: 142.9 bits (359), Expect = 8.400e-31
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAY 154
            N ++R    +++    +LSHK  V RLY+ SLKTL+SW IDR ++  EA KIR+EF +N+ L PESG  K LVREAQ+K+  ++HPD+YI  +MPGG+L+MRN P+P DV F  G +P+++   P   INIDMTP+   E     V VD + K Y
Sbjct:   11 NKTLREVVGRFVGAPQQLSHKQKVQRLYKMSLKTLDSWVIDRRLWNEEATKIRAEFDANSALDPESGLAKRLVREAQDKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGEIPDDVELSPLEAINIDMTPLPAKE----TVFVDFSKKGY 161          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: CCA22391.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 140.6 bits (353), Expect = 4.100e-30
Identity = 71/155 (45.81%), Postives = 99/155 (63.87%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAYF 155
            N ++R   A ++ P   L+H   V RLY++SLKTL SW IDR ++  EA K+R++F +N HLAPES + K  ++EA EKL  ++HPD+Y+  +MPGGT FMRN PLP +V F   VPE++   P   +NID TP+   E     V VD + K+ F
Sbjct:    2 NQTLREVVAHFVAPPKNLTHTQVVQRLYKQSLKTLESWVIDRRLWNEEAVKVRAQFDANRHLAPESDQAKFAIKEANEKLKKYTHPDRYVFNYMPGGTKFMRNAPLPLEVCFPNGVPEDVEVSPVEAVNIDGTPLPPKE----TVFVDFSKKSSF 152          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: CBN75611.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 128.3 bits (321), Expect = 2.100e-26
Identity = 67/159 (42.14%), Postives = 97/159 (61.01%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEELHEE------PINIDMTPVVKGEKGD-GRVLVDSANKAYF 155
            N++ R AAAQ+I+    ++HK  V RLYR SLK L+SWAIDR +FL EA K+R+ F   +   P+S + KAL+R A + +  H H D+YI P+MP G+ FMRNPP P +  +   +P+E+  E       + +DM+   +G     G+VLVD A K  +
Sbjct:    6 NSTFRGAAAQFISKQHPITHKQEVCRLYRASLKLLDSWAIDRTIFLEEATKVRASFDEGSKCGPDSARAKALMRGAYKMIDEHVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDEVLAEFKGVPMEVEVDMSRPEEGRMSKAGQVLVDLATKRVY 164          
BLAST of NO04G04680 vs. NCBI_GenBank
Match: XP_008608510.1 (hypothetical protein SDRG_04612 [Saprolegnia diclina VS20] >XP_012208716.1 hypothetical protein SPRG_22330 [Saprolegnia parasitica CBS 223.65] >EQC38183.1 hypothetical protein SDRG_04612 [Saprolegnia diclina VS20] >KDO20587.1 hypothetical protein SPRG_22330 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 117.1 bits (292), Expect = 4.900e-23
Identity = 68/156 (43.59%), Postives = 96/156 (61.54%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSEANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGTLFMRNPPLPFDVVFA-GHVPEELHEEP---INIDMTPVVKGEKGDGRVLVDSANKAYF 155
            N +   AA      A  LSHK  V RLY++SLK L+SWAIDR ++  EA KIR++F +N   +  +   + L+R+AQ KL+  +HPD Y++  MPGG+ FMRNPPLP +V F  G +P+++   P   INID TP  + E  +  VLVD   K+ +
Sbjct:    6 NHAFLQAALSVRGAAPTLSHKQQVTRLYKRSLKLLDSWAIDRRLWNDEATKIRAQFDANKFAS--AAVAERLIRDAQAKLVEFTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGVIPDDVEVSPLKAINIDTTPYREDELKE-TVLVDFPTKSSY 158          
The following BLAST results are available for this feature:
BLAST of NO04G04680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
1002003004005006007008009001000110012001300SequenceEWM28859.1GAY05335.1XP_024577352.1XP_002903122.1XP_008911262.1XP_009530932.1OWZ12573.1CCA22391.1CBN75611.1XP_008608510.1
Match NameE-valueIdentityDescription
EWM28859.11.400e-7088.16nadh ubiquinone oxidoreductase b22-like subunit [N... [more]
GAY05335.16.200e-3454.30Hypothetical protein PINS_013139 [Pythium insidios... [more]
XP_024577352.13.400e-3250.32NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit... [more]
XP_002903122.17.600e-3249.68conserved hypothetical protein [Phytophthora infes... [more]
XP_008911262.19.900e-3249.68hypothetical protein PPTG_15717 [Phytophthora para... [more]
XP_009530932.11.700e-3149.03hypothetical protein PHYSODRAFT_562177 [Phytophtho... [more]
OWZ12573.18.400e-3148.39Nadh ubiquinone oxidoreductase [Phytophthora megak... [more]
CCA22391.14.100e-3045.81conserved hypothetical protein [Albugo laibachii N... [more]
CBN75611.12.100e-2642.14conserved unknown protein [Ectocarpus siliculosus][more]
XP_008608510.14.900e-2343.59hypothetical protein SDRG_04612 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009316NSK009316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04680.1NO04G04680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628373gene_2256Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100133g10gene1748Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04680.1NO04G04680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04680 ID=NO04G04680|Name=NO04G04680|organism=Nannochloropsis oceanica|type=gene|length=1325bp
CGATAAGCGAGCAAAGAAGGCATCTTTGCTCATTCTTGAGCCAGATGTAC
CCTTGAGCACATTACGCCCCTGACCCTACAGCTACCAGAACGACACCCAC
TACAGCACGAAGAAGAAGGCGTGGGAGCGGGTGTGGTGGCTGTAGAAGCC
GCAGCGAAGCAAGCTGCCACTCATTTGTCGCCTCCCCCATCCGCCCTACC
CTCAGTGCCCAACGCCCTCTCACTCGCTCCCCGCCCTCCCCATCCTCCCA
CCCTCCACCCCTTCAGGTCACAGACAGGCAAGCAGGGCAGGCAGGCAGCC
ATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATCAACCCCGC
CGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCGCAAAAGCC
TCAAGACACTCAATTCCTGgtccgtatgtatacatggcgtgggcctgggc
ctcccttcctccctctctccgtacacctttgtgtgcttgtgtgcttgtgt
gcttctactattgcagtcgacaccgtgagggtctgctgcttgtgtgtggg
gtcatcctcacctcctttcctctcttcttccatctctccccttgttccct
tgccttggcgtgcctgttaggacatcttattgcactcattggccttcctt
ctccgcatatgcccactttgtatggaacctataggatgctcgcgccgtcc
cactcactcactcaccctccctccctccatctccctctgtccctccctcc
tttcatcctcaccccctcgccacccacacagGGCGATTGATCGCGAAGTG
TTCCTAAGCGAAGCCAACAAAATCCGCAGCGAATTTTCGTCCAACGCACA
CCTTGCTCCCGAGTCAGGGAAGGTCAAAGCCTTGGTGCGCGAGGCGCAAG
AGAAGCTGCTGACACACTCGCATCCGGACAAGTACATTTTGCCCTGGATG
CCGGGAGGAACTTTGTTTATGCGTAACCCGCCCTTGCCCTTCGACGTGGT
GTTTGCAGGCCACGTGCCCGAGGAGCTGCACGAGGAGCCAATTAATATAG
ACATGACACCGGTGGTGAAGGGGGAGAAGGGCGATGGGCGGGTGTTGGTG
GACAGTGCCAATAAAGCCTACTTTTAGAGGAAGGGAGGGAGGAAGGGAGG
GAGGAAGGGAGGGAGGAAAGGAGGGAGGGAGGAGGAGTGTATGTAGAAGA
TGAAAGGGGAGGAGGAGAAGTAATGGGAGAGGGTGGTTGAAGAATGGGGG
GGGAAAGGGAGTGGAAGACAAGAAGCACAGCAAATATTGAGATGAAGGAG
CCCGCGCGAGAGAGAGACGGGACAA
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protein sequence of NO04G04680.1

>NO04G04680.1-protein ID=NO04G04680.1-protein|Name=NO04G04680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MANASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSE
ANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGT
LFMRNPPLPFDVVFAGHVPEELHEEPINIDMTPVVKGEKGDGRVLVDSAN
KAYF*
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Synonyms
Publications