NO04G04620, NO04G04620 (gene) Nannochloropsis oceanica

Overview
NameNO04G04620
Unique NameNO04G04620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length942
Alignment locationchr4:1258100..1259041 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1258100..1259041 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010281DUF885
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009325NSK009325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04620.1NO04G04620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04620.1NO04G04620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04620 ID=NO04G04620|Name=NO04G04620|organism=Nannochloropsis oceanica|type=gene|length=942bp
ATGTACGGGCATCAAGTGCCGGGGGAGGACTGGAAGGAGGGAGGGGAGGA
GAGAGAGATGGAGAGGGAGGAGGAAGAGGAGAGAGAGCGGAGGAGGGGGG
AGGAATTGTTGGTGGACATCGAGAGGAAAGGGGAGAAAACGTTTGGGAAG
GTGGTGATGGAATTGGAAGAAACAGCCAAAATAATTTCGGCGGCTGAGGG
GAGGGAGAGAGGGAGGGAGGATGGGAAGAAGTGGGGGAGAACATGGCAGG
ATTGGTGGAGGGAGCTTAAAGGGACTGAACTCCCATCTGCTGGTGCTTCC
GCTGCTATTCCTGCCACTGCTGTTGCTGCAACTACTGGTAGTGGCTGTGA
TAACACAAGCACTGCAAGCACGATTGCGGCTGTGGGGTCATTCCTCCCTC
CTGCCCTCCCTCAGCCCCTCCCTCGACCATGGTTTACGTGTTCTGGCTTT
ACTGATGGTTATAACCTCCTTGTTGCTGAAGAGCCCTTCCTTCTCCCTCC
TTCCACCCCCTCCTCTGCTGCTATTGCTGCACCTACTGCTGCCACCGCTA
CATCTTCCACACTTCCCTCCCTCCCTCCCTCCCTCCTCCCCGCCCGCCTT
CTTTTCCTTCGCCGCCTCCTCGTCAGTGCTGTCCGCTGTCTTTTGGATAT
TAAACTTAATGGGGGCGAATGGTCACATAGAAAGGTTTGTGCGTTCCTGA
AGGAGACGATAGGGATGAGTGAGGAGGAGGCAGGGAGGGAGGTTTGGCTT
TACTTGACTCAGCCGCTGGTGGCCTGTGGGGGGTTGATGGGATGGGAGGA
GATAAGGAGGTGGAGGATGGAGTCAGGGGGGGAAGGAGGGAGAAAGTTTT
GGGAGGGGCTAGGGCGACATGGCCGGATTCCGGTGTGTTTTGTGAGGTAC
TTGGAGGAGGGGCAGGAGGGAGGAAGGAAGGGAGGGATATGA
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protein sequence of NO04G04620.1

>NO04G04620.1-protein ID=NO04G04620.1-protein|Name=NO04G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MYGHQVPGEDWKEGGEEREMEREEEEERERRRGEELLVDIERKGEKTFGK
VVMELEETAKIISAAEGRERGREDGKKWGRTWQDWWRELKGTELPSAGAS
AAIPATAVAATTGSGCDNTSTASTIAAVGSFLPPALPQPLPRPWFTCSGF
TDGYNLLVAEEPFLLPPSTPSSAAIAAPTAATATSSTLPSLPPSLLPARL
LFLRRLLVSAVRCLLDIKLNGGEWSHRKVCAFLKETIGMSEEEAGREVWL
YLTQPLVACGGLMGWEEIRRWRMESGGEGGRKFWEGLGRHGRIPVCFVRY
LEEGQEGGRKGGI*
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Synonyms
Publications