NO04G04540, NO04G04540 (gene) Nannochloropsis oceanica

Overview
NameNO04G04540
Unique NameNO04G04540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3531
Alignment locationchr4:1238420..1241950 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1238420..1241950 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL078nonsL078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR108ngnoR108Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009331NSK009331Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04540.1NO04G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668910gene_2241Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100402g2gene1760Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04540.1NO04G04540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04540 ID=NO04G04540|Name=NO04G04540|organism=Nannochloropsis oceanica|type=gene|length=3531bp
GGGAGGATGAGGGAGGTGAGTTTTACAAGTGGTGCGTGGTGGAGTTATTT
TGTAGAACACGGGCATGAAAGAGGGAAGAACGAAGAAGAACTGCCTGCAC
GCTTTTTAATAGGGATTTATCTGACTTTGTGGAAGACCCAAGGATAGTTA
AGACGGGCATGGGCAAGCGGAACAGGAAGAGATGAGACGGTCTGAGGGGA
GGCTAAGGGAGGGAAAGGGAATACAAAAGGAGACAGAAAGGAAATAGGGG
GCTTGCACACATGCAGGCCTGAAGCCAATTTCCACGCTCATGGTAAACGA
AAGACACGAGGGGACACGACGCACGGGTATTATCAAGGTTAACGTCGAAG
CAACCCCTTTCCGCGTGCGTACCTCTTGAATCGAGACCATTCCTCTTCCG
CCACCTCGTGACCGTGCAGGACCCACCCACGACGATGCTTGTGCTTGTGC
TGCTGTAGCCGCTGCTCCTCGGTGGTGGCGGTCGTGATGGCAGCGCTCGC
AGCGGCGAAAAGGCAGCTGAGGAGGATGGCTGATCGGAGAAGCAGCATGT
TGATGTAGCACGTGATGTTGATGATATTGAGGGTCTCAACGAAAGCCTGT
ATTTGTGATAGGTAGCCAAAGACAGTGGGCAAGCGGATAGAGCCACAAGG
ATGAGGACGACCAACGGAGACGCACTGCAAGTTTTGGAGAGTTGTGTGTC
CAAGTCAAGGCTTACAAGGCTAGATCTGCACTATACACTGCTGCGGCATC
GGCATTGGCGCGCTCGCCGAAGTTATAAACGTTCGTTACAGTGGAAGAGG
TCGATCGATCGATCGGGCAGCACAACGACCACCCCTTAACCCTCCCTCGC
AAACACCACACGTAGGCTACGCCCGACCTTTTGCGTCATTCTCTTGCATT
TCTGCAACTCAGTCACCATGCCGTCATCCGCAAAGAAAGgtaagaaggac
aaccgaagagtgaccactagcgcgctcacacccatgcgccgcaggttgta
gtggagcgtccaatcacccatctcttttcacataaacacccacagGCGCG
GGCGTGCCCACTCGAATCACGCATATCAACGACGACACCGACGATGGACA
GCATCCCATGTCCAAGGCCCACAAGCGCCATTACAAAGAGCCCCTTGTCT
CTATGAAGGAAATTATGGCCTACGAGGCCGTGCCGGCCACCTATCCAAAA
GTTACTGCGTCGCGCACTATCGCCATCCCCAAGAAGGCCAACAAAAAGCC
CTCTGCTTATTCCTGTTCTGCCACACCCCAAAATATTTCTTCCGCCTCCT
CCATCACCATCACTCCCAAAAGGCGGTCGACGCCCTTGATGCCCCGCCGT
CAGACTCCCCAAGAATTAGAGGAGGAAGAAGACGACGAAGAAGGAGAAGA
TCAGACAGAGACAGAGAGAGCCGCTGCGCCCTCCTCCTCCGTACGTCTAA
GCCGGAGGAGTAGCCTTGCCCTCAACAAAACCACCGCAGCAGCAGCAGCA
GCAGCAGCATCATCAGCAGCAACAACGGAAGAAGAGATGGCGGACATGCA
CCGTCTGCGTGCCCTCGCCATCGAACACGCTGCCCGGGCCCTCCTCCAAA
AGAAACAACAGAGACAAGCCGCCAGACAAGCAACCAATGCCTCCTCCCTG
TCCTCTTCCCTTACTGATGCTCCCATCCAATCCCCGTGGGCAACGAAGGC
CTTTAGCAAGCCTACGCGGAAAATGGGAAGGAAGAAGATCATTGGTGCCG
CAGCTGCTGCCTCTGGATCACAGGAATTGTTTCTCTTTCCTTACCCAGCC
ACACCCGAAGCATTGGCGAGAGGAAAGGAAAAGACGGGAAGCAATCCTTC
CACTGCGGCCGCTGCTACTACTGCTGCTGCTGCCAGTCGTGCTAAATGTG
GACAAGCAAGCAGCAAGCAGAATAAAATGCCTACGACACCTGCAGCTGCT
GCTGCGGGTGCCGCAGGTGCAGGTGGGGCGGCGAAGGAAGGGGAAAAGAA
GAAGGGAAGGAAAAGGGTGATGCTGAGCACTACTACTACTACCACCATCC
CTGCTACAAGGACCCCGGCGAAAGCCCTAGTGACAAGAAGCAGCAGCAGC
AGCAGCAGCAGCAGTAGCAGGAGGACAACACCCTGTCGAGCCTCCTCCTC
CTCCTCCTCCTCCTCTTCCACTCCCGATGCTCTTACTACTGCTTCTGCTC
CCTGTATCGCAGCGATCGCAGCGACAGCATCAAAAGCACCAGCACCAGCG
GTTTCGAAAATCCCGACGCCCCGCAAGCCCAAGACTGTCGCTGCTGCTGC
TGCAGGGAGGACGACTTCAGGAATGACGACCAGGACAAGGAAGGGTCACG
TCCAGCCTCAACCACCGGCACAAGCGCAAATGTGGGAAGAGGGCAGCAGC
ACCAGCAGCAGGAGTAGCAGTAGGAAGAAGGTGGTTAAGAGGGAGGCAAG
GAGGGAGGGAGGGAGGGACGTTGAGGCAAACTATGCGTCGTTTTTGGCCT
CTCTGGAACAACAGGAGGGTACGGAAGCATTCTCGACACGGAAGGAGGGA
GTGAGGGAGGAAGAAAAGGCGACACTAGGAGTGACGACGATGACAGGGAA
GGAGAAAGGGAAGATAACACTGCCGGTTGCAGAGGAGGAGGAGGAGGAGG
GAAGGGGGGAGGAGAGGTGCTGAAGGAGGTGGGTAACAGCAAGAGCAATA
GGCGCAAGACGATTTTGAAGCTTAAGAAGACAACCAAAGTCGCTGCCTAT
GTCCCGGAGGAGGACGAGGAAGGGAGGGAGGACGAAGCGGAAGAAGAGGA
GGAGGCACTCTTGAAGACGGATCCGATGGCTTACAAAGAATGGATTGAGC
GCGTCCCACCGGCGGGCACTAAGGTGGTGAAGGGCCTGTCAGTTGAGGAT
TGCTTGCGATAAGAAGAATGAGGAAGGCAGCGGGGGAGGGGTTGGAAAGG
AGTTAGGGAGGACGAGGAGGAGGGGTCGGTTGTGCCGGCGGGCACTTAGA
TGGTATAAGGGCCTGTCAATGATGGGAATGGTGGTGGCAGAGGGAGGGAG
GGAAGAAAAAATTGGGTGTACATGTAAAGAGAGAACTGAGAAACAGGACG
AAGGAGTCTATGTCTGTGTTGTGGACATGGGTTCATGAGGAAAGGAAGGG
GAGGAAAGAGGGAGAGAGGAGAGGAGTGTGTGGGGTTTCGGGCGTGATGT
TAAGCAGGCGTTTTATTTCGGCCATTCAATTTTTGAATTTCCTGGTTTTT
GTTAACTTTCTAAAAAAGGGATAGTATGGGTGAGACAGATGTTATGAACA
TTATTAGGAGGAGATGAGTGGGGGGAGGGGTGGAAGAAGAAAAAGTCGAC
GGCACGGCCGCAGACGCAAAGTTTGAGTCAATCACAGGAATGAATGTATG
TAGGCAGCGACGTTGGAGGCAGGGGAGGTTGATGCCGACGAGAGGAAGTG
GAAGGAGGCCGAGAACAAGAAGATATACATACACTCATAGCTCTAGCAAG
AGATTAAAAAAAAATCGAGATTATGATTGTG
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protein sequence of NO04G04540.1

>NO04G04540.1-protein ID=NO04G04540.1-protein|Name=NO04G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MPSSAKKGAGVPTRITHINDDTDDGQHPMSKAHKRHYKEPLVSMKEIMAY
EAVPATYPKVTASRTIAIPKKANKKPSAYSCSATPQNISSASSITITPKR
RSTPLMPRRQTPQELEEEEDDEEGEDQTETERAAAPSSSVRLSRRSSLAL
NKTTAAAAAAAASSAATTEEEMADMHRLRALAIEHAARALLQKKQQRQAA
RQATNASSLSSSLTDAPIQSPWATKAFSKPTRKMGRKKIIGAAAAASGSQ
ELFLFPYPATPEALARGKEKTGSNPSTAAAATTAAAASRAKCGQASSKQN
KMPTTPAAAAAGAAGAGGAAKEGEKKKGRKRVMLSTTTTTTIPATRTPAK
ALVTRSSSSSSSSSSRRTTPCRASSSSSSSSSTPDALTTASAPCIAAIAA
TASKAPAPAVSKIPTPRKPKTVAAAAAGRTTSGMTTRTRKGHVQPQPPAQ
AQMWEEGSSTSSRSSSRKKVVKREARREGGRDVEANYASFLASLEQQEGT
EAFSTRKEGVREEEKATLGVTTMTGKEKGKITLPVAEEEEEEGRGEERC*
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Synonyms
Publications