NO04G04380, NO04G04380 (gene) Nannochloropsis oceanica

Overview
NameNO04G04380
Unique NameNO04G04380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2612
Alignment locationchr4:1183426..1186037 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1183426..1186037 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04380 vs. NCBI_GenBank
Match: EWM28764.1 (hypothetical protein Naga_100002g166 [Nannochloropsis gaditana])

HSP 1 Score: 211.8 bits (538), Expect = 3.800e-51
Identity = 122/241 (50.62%), Postives = 161/241 (66.80%), Query Frame = 0 
Query:   26 MRRAGLSLTLALSAFAAAENVVPAVPAVISATALEGKAADVKTAAQNILIKTENVVPSGAKIGTDDKPLAFKVSKTAAGEDAVVLVVSNLKVAAAKLDEAMPEASLGCFTIGDDVGKVALLMCNGKDAEDAETATPI---KKDGVVYEWVKGVITNEGPEAICQLNFASVDTELAKIPNLETLPAELSELTSFKLEPKQKMDYAFLLPVDA-EKGVPTIGVMDSLGPCEMIEKAKAALAAG 263
            MRRAGL   L  +AFAAAE+  PAV ++++     G+ ADVK+A QNILI+TE+  P+   +G    P+   +S    GE+A+VLV  +L VA            +GC+TIGDDV K+ALLMC  KD+     ATP+   +KDG  + WVKG +TNEGPEAICQL FAS D +L  +  +ET+P EL  LT FKLEP++ ++Y+FLLP+DA E   P +G+ D+LGPC+MIEKAK ALAAG
Sbjct:    1 MRRAGLVAALTYAAFAAAEDAAPAVTSLVN-----GQTADVKSALQNILIQTEDAKPASITLGDAKTPMGISIS-NQPGEEAIVLVAPDLTVAP-------KVGQVGCYTIGDDVSKIALLMCEDKDS----AATPVPDKEKDGQAFAWVKGTLTNEGPEAICQLKFASNDLKLG-MAAIETVPKELENLTPFKLEPQESINYSFLLPIDAKEMAAPLVGIQDTLGPCKMIEKAKEALAAG 223
The following BLAST results are available for this feature:
BLAST of NO04G04380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28764.13.800e-5150.62hypothetical protein Naga_100002g166 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009352NSK009352Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04380.2NO04G04380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G04380.1NO04G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|297123gene_2225Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g166gene1778Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04380.2NO04G04380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G04380.1NO04G04380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04380 ID=NO04G04380|Name=NO04G04380|organism=Nannochloropsis oceanica|type=gene|length=2612bp
TCCGAGTACTTTTCCCACGGAGTGGGGGTATGGGTCGCTGGTCAGGAAGT
TTCCAGTAGAAACTACCACCAGTGTCAAAGCTCGCGATCTTTTTTGTTTG
TCATTCAGCTCGCTCGTCCTTGTCTTTCTTCTTGTCACATTTCCCCACAC
GGCGCACTGCTTAAACGTTGCTCGATATTGTACTTCCGGTCTTTTTCACT
TTACCCCGGCACACCCCGCCCACATGACTGTCTCACTTGTCCATGTCTGC
ACAACTGCCATTTTGGTCAGTAAAATGCTGCACCGAAACCTGGTGGTTTG
GTACACCACACCGGCACACACTCATTCGCACACAGTCAGAGTGCTTCCTG
GACTACAAGCGTCGACAGCAAACGTCGTCCCACGTGTGTCACGGCCGCTT
AGACCCGACCCTTTCCCACGATAATCTCTTCTTAGTTATGTGGTCCGTCC
TAGAGATGGTTGCACTTCTGCATGCACCACACCCACACCAACCCCCTCGC
ACCCCACAGCCAAACACCACCACTACCACCCTCTTCTTTATCAGCCATGC
GCCGCGCCGGTCTCTCCCTCACCCTTGCCCTCTCTGCCTTTGCTGCCGCC
GAGAACGTCGTTCCTGCCGTCCCCGCCGTTATCTCCGCCACCGCGCTCGA
GGGGAAGGCCGCGGATGTCAAGACCGCCGCACAAAATATCCTAATCAAGA
CGGAGAATGTGGTACCTTCTGGCGCCAAGATCGGTACCGACGACAAACCC
CTTGCATTCAAAGTCTCCAAGACCGCCGCCGGAGAGGACGCCGTTGTgta
agtgctcaaacaagggtggaagagaaaaggacgggtgggacggtgaaaat
gataaagatgaggaaaagattatttactcagcctcttcttctcctcccct
gtcccacccaacccatacagGCTTGTCGTTTCCAATCTGAAGGTAGCCGC
CGCCAAGCTCGACGAGGCCATGCCTGAGGCCAGCCTCGGGTGCTTTACCA
TTGGGGACGACGTCGGCAAGGTCGCCTTGTTGATGTGCAACGGCAAGGAC
GCCGAGGACGCCGAGACCGCTACGCCCATCAAGAAGGgtgagtattagtt
gccttcgctaaacttagccatttattatgtatgtgggacatacccatttg
tccttttgttatgtcccacttctcggtaggacatgccgacactctctcac
tcaccacccaacaccctcaacgaacacctccacaaaacaaacacatcagA
CGGGGTCGTTTACGAGTGGGTGAAGGGTGTCATTACAAACGAAGGCCCCG
AAGCTATCTGCCAGCTCAACTTCGCTTCCGTCGACACCGAGCTCGCCAAG
ATTCCCAATCTCGAGACCCTCCCCGCGGAGCTGTCCGAGCTTACTTCGTT
CAAGCTCGAGCCGAAGCAGAAGATGGATTACGCGTTCCTGTTGCCTGTCG
ATGCCGAGAAAGGTGTCCCCACTATCGGAGTCATGGACTCCCTCGGTCCC
TGCGAGATGATCGAGAAGGCAAAGGCCGCCCTGGCTGCGGGTGCCTCCGA
CACCCTGGCTACTGCCACGGGGGTGGCCGAGGACGCTGCGGCCCTTAGCA
AGAAGTCCCTCGAGGAGGCTGCTGCCGCCGCTGCGGCTGCTAAGGCTGCC
GGACAGGGTGCGCTCGATGCCACTAAGGCCGCTGCTGGGGATGCGGCCGA
TGCTACCAAGGCCGCTGCAGAGGAGGCGGCCGATGCTACTAAGGCCGCTG
CAGAGGAGGCGGCCGATGCTACTAAGACCGCTGCTGAGGAAGCGACCGAT
GCTACCAAGGCAGCTGCTGGGGAGGCGGCTGATGCGACGGTCAAGGCTGG
TGAGGTTGTTCCCGCAGTTGAGACTGAGGCGGCGGGGGTTGCGGCCGAAA
CGGCGGTCAAGGCTGAGGGGGAGGTGACTTCCCCTGCGCCCAAGATGTCG
GCGTCTGTGATGGGATTGTTCACCGTGGCTGTCTTGGTGGCCGTGCAGCT
CCTGCTTTAAGCGGCTTTTCCGATTTCATTTTTTAAATGCATGCCATTCC
CATCTCGTAAATGGTTGCGGTGAATGAATAAGAAAATAATAGGAATGGAA
TGGACGGAGATGAGATGATGGGAACTGAGTAGCTTTGGTCGAGGTAGAAA
GGCATATTTCAAAAATCTTCACGCTCTTTTTTCGGTGTGCACTATTTGAT
TATCTGATGTGGTGGATTTTTCACTGCTGACAATAAAAATAAGATGATGA
CGAGGCAAGGTACCATTCGAAACGAAAAAAAGCTGTGTACTCTAGAGAGT
TAGAATTTGATTAATTAAGAATGGAGAAAAAAAGGAAGAGAGAAGGAGAA
GATTGGAAAGAGAGAGGAAGAATATATTCAGATAGGAGGTTGGACTGCCA
GTAAGGGGCAAGGAGGTGTCATTTTAAAATTTTGGGGTGACCGCAAAAGC
ACGGATGGAATAACAAGAGGGAGCTGTCATTTGGATGCATAACTTACCAA
TTACATTATGTCGGGACAACACGACACAAGAGTGATAAAGGAGCAAAAGA
ATAAATTTATGGACACATATAGTAGAAGTGATCGAATTTCTTTCGTTCAG
AATATCTATTTT
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protein sequence of NO04G04380.2

>NO04G04380.2-protein ID=NO04G04380.2-protein|Name=NO04G04380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MHHTHTNPLAPHSQTPPLPPSSLSAMRRAGLSLTLALSAFAAAENVVPAV
PAVISATALEGKAADVKTAAQNILIKTENVVPSGAKIGTDDKPLAFKVSK
TAAGEDAVVLVVSNLKVAAAKLDEAMPEASLGCFTIGDDVGKVALLMCNG
KDAEDAETATPIKKDGVVYEWVKGVITNEGPEAICQLNFASVDTELAKIP
NLETLPAELSELTSFKLEPKQKMDYAFLLPVDAEKGVPTIGVMDSLGPCE
MIEKAKAALAAGASDTLATATGVAEDAAALSKKSLEEAAAAAAAAKAAGQ
GALDATKAAAGDAADATKAAAEEAADATKAAAEEAADATKTAAEEATDAT
KAAAGEAADATVKAGEVVPAVETEAAGVAAETAVKAEGEVTSPAPKMSAS
VMGLFTVAVLVAVQLLL*
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protein sequence of NO04G04380.1

>NO04G04380.1-protein ID=NO04G04380.1-protein|Name=NO04G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MHHTHTNPLAPHSQTPPLPPSSLSAMRRAGLSLTLALSAFAAAENVVPAV
PAVISATALEGKAADVKTAAQNILIKTENVVPSGAKIGTDDKPLAFKVSK
TAAGEDAVVLVVSNLKVAAAKLDEAMPEASLGCFTIGDDVGKVALLMCNG
KDAEDAETATPIKKDGVVYEWVKGVITNEGPEAICQLNFASVDTELAKIP
NLETLPAELSELTSFKLEPKQKMDYAFLLPVDAEKGVPTIGVMDSLGPCE
MIEKAKAALAAGASDTLATATGVAEDAAALSKKSLEEAAAAAAAAKAAGQ
GALDATKAAAGDAADATKAAAEEAADATKTAAEEATDATKAAAGEAADAT
VKAGEVVPAVETEAAGVAAETAVKAEGEVTSPAPKMSASVMGLFTVAVLV
AVQLLL*
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Synonyms
Publications