NO04G04370, NO04G04370 (gene) Nannochloropsis oceanica

Overview
NameNO04G04370
Unique NameNO04G04370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length948
Alignment locationchr4:1181979..1182926 -

Link to JBrowse

Properties
Property NameValue
DescriptionExosome component 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1181979..1182926 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000176nuclear exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012588Exosome-assoc_fac_Rrp6_N
Homology
BLAST of NO04G04370 vs. NCBI_GenBank
Match: EWM28817.1 (exosome component 10 [Nannochloropsis gaditana])

HSP 1 Score: 254.6 bits (649), Expect = 4.000e-64
Identity = 167/311 (53.70%), Postives = 204/311 (65.59%), Query Frame = 0
Query:    1 MATLDELLLHQPQAQEG----QISSNGNDGVFIKNLFKSLIQGTRASNAIPSGGVGEEGRGEASEFAYQAAISPVFAEKANKASETVLTLLKKLVRHMRKXXXXXXXXXXXXXXXXXXXXXXXPGLEDVEDPAAFEGLADIMEDLLDNVEGYLMNKGKKEEKG-SEGGGGATATMSNESWERLRNMAGAARQTAMASRYKIMLSQTLDIPKPQEAFKSEIDNRRETCFRPRCWREGGREEGQGLETESPHLFETEIRNFSYMPWQLELPGEEEVKLQKPLALEQSEAVTLVDTVEGLKEAVQVVREELEEE 307
            MATLDELL HQPQ + G     + ++G  G+F+KNLFKSLIQGTRASNAIP+G  G  G GEAS+FA+ AA S  FA+K+   S+  L LLK+LV ++ K             XXXXXXX    GL+DVEDP AF  LAD++EDLLD+VE +L    + E +G  E G           W RLR MAGAARQT  ASRY  MLSQTLDIPKPQ AF+ EIDNRRETCFRP C    G+    G  +E PH  ETEIRNF+Y  WQL++P E +  +Q PL+L++S    LV + E L+E VQ +REELE+E
Sbjct:    1 MATLDELLFHQPQPRMGIDDISVENSGGGGIFLKNLFKSLIQGTRASNAIPAG--GGLGNGEASDFAFHAATSSNFADKSLDTSKETLALLKQLVDYIIK----TGGKDQDESXXXXXXXALIAGLDDVEDPDAFGNLADLIEDLLDHVEYFLSTAKRGEGEGIKEAGDQEENKKLASEWARLRRMAGAARQT--ASRYNTMLSQTLDIPKPQHAFQDEIDNRRETCFRP-CPHGDGKSVEGGNASEIPHPCETEIRNFTYSTWQLQVPAEND--MQVPLSLQESSPAGLVASPEALREMVQSIREELEKE 300          
BLAST of NO04G04370 vs. NCBI_GenBank
Match: CBN78712.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 118.2 bits (295), Expect = 4.500e-23
Identity = 103/327 (31.50%), Postives = 156/327 (47.71%), Query Frame = 0
Query:    3 TLDELLLHQPQ--AQEGQISSNGNDGVFIKNLFKSLIQGTRASNAIPSGGVGEEGRGEASEFAYQAAISPVFAEKANKASETVLTLLKKLVRHMRKXXXXXXXXXXXXXXXXXXXXXXXPGLEDVEDPAAFEGLADIMEDLLDNVEGYLMNKGKKEEKGSEGGGGATATMSNESWERLRNMAGAARQTAMASRYKIMLSQTLDIPKPQEAFKSEIDNRRETCFRPRCWR------------------------EGGREE---GQG-LETESPHLFETEIRNFSYMPWQLELPGEEEVKLQKPLALEQ---SEAVTLVDTVEGLKEAV 297
            ++DE+LL  P   A  G          F++ LF+SL+ GTRASNAIP G    EG+    ++AY A   P F  +A    + VL +++  + H+ +                       P + D  DP  F+G+AD++E LL++V+ YL      +E   +G     A M ++    L+ +A AAR  +  ++Y  M+S  +D+PKPQEAF+ EIDN R+T F P+                           EG  E+   G G L+   PH +E EIR F YMP Q++ P + ++    PL  ++   + A T VDTVE L   +
Sbjct:    4 SIDEVLLGTPARGAGGGXXXXXXXXDKFVRQLFESLLLGTRASNAIPDG----EGQ---EDYAYNATF-PEFRSRAEGCGKQVLEVIQIFLNHVSQ-----------------EGELGLPEVGDAGDPEVFQGIADVVETLLEDVDSYL------DEAAGKGANQQVALMRHQ----LKTVASAAR--SGPAKYASMVSNVVDMPKPQEAFQEEIDNSRDTPFVPKLREKPNAVTPLDLAPISTLSTSMGMELEGRAEDSMSGSGLLDFHYPHPYEVEIRAFHYMPAQVKAPLDSQLVRPVPLVGDEGHKAPAATFVDTVEALDSMI 293          
The following BLAST results are available for this feature:
BLAST of NO04G04370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28817.14.000e-6453.70exosome component 10 [Nannochloropsis gaditana][more]
CBN78712.14.500e-2331.50conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04370.1NO04G04370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04370.1NO04G04370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04370 ID=NO04G04370|Name=NO04G04370|organism=Nannochloropsis oceanica|type=gene|length=948bp
ATGGCAACTCTCGACGAGCTCCTCCTCCACCAGCCGCAGGCGCAAGAAGG
ACAAATCAGCTCTAATGGTAACGATGGGGTATTTATAAAAAATTTGTTTA
AGAGCTTAATTCAAGGCACGCGGGCTTCCAATGCGATTCCTTCTGGGGGT
GTTGGAGAAGAGGGACGAGGCGAGGCTTCTGAATTCGCCTACCAAGCAGC
TATCTCCCCAGTCTTTGCGGAGAAAGCCAATAAAGCCAGTGAAACAGTGC
TTACCCTTCTGAAAAAACTGGTGCGCCACATGCGGAAAGCGGTGGGCGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAAATTGACGAAGAAGATGATGACCT
GTTATTGCCAGGCTTAGAGGACGTGGAGGACCCGGCTGCTTTTGAAGGCT
TGGCAGACATCATGGAAGATCTACTTGATAATGTGGAAGGTTACTTGATG
AACAAGGGGAAGAAAGAAGAGAAGGGAAGCGAGGGTGGGGGAGGGGCAAC
GGCGACGATGTCGAATGAGTCGTGGGAGAGGCTACGCAACATGGCGGGAG
CTGCACGACAAACAGCAATGGCAAGTCGATACAAGATAATGCTCTCTCAA
ACTTTAGACATCCCTAAACCGCAAGAGGCGTTTAAATCCGAAATCGACAA
TCGGAGAGAAACTTGTTTTCGACCTCGGTGCTGGAGGGAGGGAGGGAGGG
AGGAAGGGCAGGGACTGGAGACAGAAAGCCCCCATCTGTTCGAGACGGAG
ATCCGTAATTTTTCGTACATGCCGTGGCAGCTTGAGTTGCCGGGGGAGGA
GGAGGTCAAGCTGCAGAAACCGTTGGCGCTGGAGCAGAGTGAGGCTGTAA
CGCTCGTGGACACGGTGGAGGGGCTGAAAGAAGCAGTGCAGGTCGTGAGG
GAGGAGTTAGAGGAGGAAGGGAACGGGGAAGGGGGGGGGAGAAGATGA
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protein sequence of NO04G04370.1

>NO04G04370.1-protein ID=NO04G04370.1-protein|Name=NO04G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MATLDELLLHQPQAQEGQISSNGNDGVFIKNLFKSLIQGTRASNAIPSGG
VGEEGRGEASEFAYQAAISPVFAEKANKASETVLTLLKKLVRHMRKAVGE
EEEEEEEEEIDEEDDDLLLPGLEDVEDPAAFEGLADIMEDLLDNVEGYLM
NKGKKEEKGSEGGGGATATMSNESWERLRNMAGAARQTAMASRYKIMLSQ
TLDIPKPQEAFKSEIDNRRETCFRPRCWREGGREEGQGLETESPHLFETE
IRNFSYMPWQLELPGEEEVKLQKPLALEQSEAVTLVDTVEGLKEAVQVVR
EELEEEGNGEGGGRR*
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Synonyms
Publications